Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48495 * 109.47395 * 240.00159 * 3 2 1 5 5 H 1.48507 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47155 * 119.99703 * 3 2 1 7 7 C 1.38945 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00687 * 157.80613 * 7 2 1 9 9 N 1.37108 * 119.99771 * 337.81134 * 7 2 1 10 10 C 1.46504 * 119.99714 * 326.01339 * 9 7 2 11 11 C 1.52998 * 109.46557 * 264.53905 * 10 9 7 12 12 C 1.50702 * 109.46995 * 180.02562 * 11 10 9 13 13 O 1.20835 * 119.99869 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00331 * 180.02562 * 12 11 10 15 15 C 1.34772 * 120.00076 * 146.01024 * 9 7 2 16 16 O 1.21292 * 119.99741 * 179.97438 * 15 9 7 17 17 C 1.50704 * 120.00182 * 0.02562 * 15 9 7 18 18 C 1.52997 * 109.47114 * 179.97438 * 17 15 9 19 19 N 1.46502 * 109.46944 * 179.97438 * 18 17 15 20 20 C 1.34772 * 120.00012 * 180.02562 * 19 18 17 21 21 O 1.21701 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.46585 * 120.00113 * 180.02562 * 20 19 18 23 23 C 1.36646 * 125.46029 * 179.97438 * 22 20 19 24 24 C 1.37466 * 113.30019 * 179.97438 * 23 22 20 25 25 C 1.33820 * 115.09943 * 0.02562 * 24 23 22 26 26 S 1.70613 * 110.95570 * 359.97438 * 25 24 23 27 27 H 0.96998 * 120.00420 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46974 * 24.53626 * 10 9 7 29 29 H 1.09000 * 109.46708 * 144.54053 * 10 9 7 30 30 H 1.09002 * 109.47520 * 299.99669 * 11 10 9 31 31 H 1.09000 * 109.47490 * 60.00627 * 11 10 9 32 32 H 0.96702 * 116.99931 * 180.02562 * 14 12 11 33 33 H 1.09001 * 109.46993 * 59.99556 * 17 15 9 34 34 H 1.09005 * 109.46699 * 300.00077 * 17 15 9 35 35 H 1.09006 * 109.46936 * 60.00253 * 18 17 15 36 36 H 1.08996 * 109.47471 * 300.00027 * 18 17 15 37 37 H 0.97005 * 120.00110 * 0.02562 * 19 18 17 38 38 H 1.08005 * 123.34986 * 0.27691 * 23 22 20 39 39 H 1.08001 * 122.45381 * 180.02562 * 24 23 22 40 40 H 1.08005 * 124.51918 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0288 -1.2378 -0.3538 9 7 1.3996 -2.3469 0.4474 10 6 0.4286 -2.2788 1.5424 11 6 1.1316 -2.5828 2.8668 12 6 0.1328 -2.5134 3.9932 13 8 -1.0227 -2.2476 3.7604 14 8 0.5269 -2.7459 5.2550 15 6 1.6938 -3.5336 -0.1196 16 8 1.1550 -4.5453 0.2770 17 6 2.6929 -3.6037 -1.2457 18 6 2.8429 -5.0554 -1.7048 19 7 3.8138 -5.1234 -2.7998 20 6 4.1079 -6.3101 -3.3669 21 8 3.5667 -7.3252 -2.9697 22 6 5.0797 -6.3782 -4.4622 23 6 5.4601 -7.5169 -5.1148 24 6 6.3884 -7.2927 -6.1036 25 6 6.7572 -6.0155 -6.2567 26 16 5.9425 -5.0077 -5.1470 27 1 -0.4851 0.8400 0.0004 28 1 -0.0048 -1.2795 1.5820 29 1 -0.3611 -3.0110 1.3737 30 1 1.5651 -3.5821 2.8272 31 1 1.9213 -1.8506 3.0355 32 1 -0.1497 -2.6903 5.9436 33 1 3.6570 -3.2309 -0.8996 34 1 2.3449 -2.9928 -2.0787 35 1 1.8789 -5.4285 -2.0507 36 1 3.1911 -5.6659 -0.8716 37 1 4.2449 -4.3143 -3.1167 38 1 5.0667 -8.4951 -4.8805 39 1 6.7906 -8.0890 -6.7123 40 1 7.4743 -5.6688 -6.9862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -130.416581 kcal Electronic energy + Delta-G solvation = -26178.027888 eV Core-core repulsion = 22084.663929 eV Total energy + Delta-G solvation = -4093.363959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86606 -39.70379 -38.68405 -37.62871 -35.85714 -35.28175 -34.68196 -32.06396 -31.35430 -30.47182 -29.28356 -25.58256 -25.26911 -24.31282 -22.65531 -21.22356 -20.50522 -19.54098 -19.19997 -18.62122 -17.77322 -16.80434 -16.42771 -16.09515 -15.93063 -15.65360 -15.52399 -15.43450 -14.89155 -14.50006 -14.33562 -14.14596 -13.53824 -13.35923 -12.99946 -12.94746 -12.74297 -12.58558 -12.47733 -12.37400 -11.79778 -11.41610 -11.32610 -11.22183 -11.19277 -11.13834 -10.83097 -10.72237 -10.52660 -10.16722 -10.09282 -10.06845 -9.25734 -9.18734 -8.90449 -8.81432 -8.61662 -7.73316 -6.50958 -4.20860 0.31501 1.24594 1.64838 2.21256 2.65675 3.02604 3.12369 3.14520 3.16036 3.20259 3.40417 3.75209 4.01584 4.65310 4.72473 4.80037 4.86274 5.07295 5.23939 5.39004 5.56106 5.63498 5.71994 5.76973 5.86889 5.93646 6.02404 6.08360 6.22328 6.30588 6.36889 6.43797 6.59892 6.79990 6.84579 7.22648 7.36029 7.50221 7.73408 8.19107 8.20009 8.29603 8.92517 9.32952 9.76560 10.50305 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.002576 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.626467 B =10867.301017 C =12523.508468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.435 5.435 10 C 0.126 3.874 11 C -0.126 4.126 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.473 3.527 16 O -0.600 6.600 17 C -0.132 4.132 18 C 0.136 3.864 19 N -0.723 5.723 20 C 0.586 3.414 21 O -0.528 6.528 22 C -0.260 4.260 23 C -0.061 4.061 24 C -0.149 4.149 25 C -0.235 4.235 26 S 0.204 5.796 27 H 0.274 0.726 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.396 0.604 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.697 -4.476 -6.815 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.162 4.162 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.111 0.889 9 N -0.153 5.153 10 C 0.002 3.998 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.261 3.739 16 O -0.486 6.486 17 C -0.172 4.172 18 C 0.013 3.987 19 N -0.374 5.374 20 C 0.371 3.629 21 O -0.406 6.406 22 C -0.380 4.380 23 C -0.094 4.094 24 C -0.181 4.181 25 C -0.373 4.373 26 S 0.470 5.530 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.230 0.770 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.840 -3.897 -6.408 14.016 hybrid contribution 0.321 -0.062 -0.135 0.353 sum 12.161 -3.959 -6.543 14.365 Atomic orbital electron populations 1.69923 1.06297 1.28345 1.43789 1.25377 0.95048 1.00024 0.95761 0.86218 0.79417 0.81179 0.79211 1.19593 1.20840 1.19713 1.19402 0.97313 0.85311 1.45984 0.88850 1.43403 1.38099 1.05704 1.28116 1.21208 0.90747 1.05782 0.82058 1.21862 0.97744 1.05087 0.91752 1.23773 0.89111 0.71714 0.82885 1.90709 1.20783 1.44315 1.84332 1.84589 1.46785 1.83788 1.18470 1.20113 0.85327 0.84174 0.84236 1.90583 1.56505 1.35270 1.66290 1.21516 1.00490 0.95563 0.99615 1.21199 0.92087 0.97177 0.88250 1.45976 1.45170 1.08671 1.37562 1.16923 0.80977 0.83904 0.81086 1.90848 1.52362 1.34391 1.63023 1.24774 1.08475 0.98261 1.06508 1.20818 0.95702 0.99057 0.93871 1.20051 1.00356 0.96926 1.00754 1.25330 1.07324 0.98359 1.06259 1.83112 1.33914 1.09128 1.26821 0.91600 0.86404 0.91712 0.88302 0.87857 0.74110 0.89571 0.88697 0.90525 0.90652 0.76977 0.82869 0.83782 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.47 11.34 55.50 0.63 -20.84 16 2 C 0.05 1.07 4.92 -17.47 -0.09 0.98 16 3 Si 0.91 18.00 29.61 -169.99 -5.03 12.97 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.35 -8.08 8.70 -14.93 -0.13 -8.21 16 8 H 0.09 1.97 6.97 -52.49 -0.37 1.60 16 9 N -0.44 -10.12 2.56 -114.81 -0.29 -10.41 16 10 C 0.13 2.93 4.19 -4.04 -0.02 2.91 16 11 C -0.13 -2.42 6.10 -27.88 -0.17 -2.59 16 12 C 0.48 8.80 8.33 36.01 0.30 9.10 16 13 O -0.51 -10.91 16.74 -18.76 -0.31 -11.22 16 14 O -0.52 -7.45 13.42 -39.25 -0.53 -7.98 16 15 C 0.47 10.58 7.60 -10.99 -0.08 10.50 16 16 O -0.60 -14.94 15.65 5.55 0.09 -14.85 16 17 C -0.13 -2.31 4.47 -27.88 -0.12 -2.43 16 18 C 0.14 2.31 4.96 -4.04 -0.02 2.29 16 19 N -0.72 -10.22 5.55 -61.65 -0.34 -10.56 16 20 C 0.59 8.97 7.78 -12.90 -0.10 8.87 16 21 O -0.53 -10.07 16.84 5.19 0.09 -9.99 16 22 C -0.26 -3.14 6.45 -36.79 -0.24 -3.38 16 23 C -0.06 -0.66 10.01 -40.44 -0.40 -1.07 16 24 C -0.15 -1.25 10.15 -41.41 -0.42 -1.67 16 25 C -0.23 -1.80 10.92 29.18 0.32 -1.48 16 26 S 0.20 1.79 22.16 -107.50 -2.38 -0.59 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.12 2.97 5.31 -51.93 -0.28 2.70 16 29 H 0.06 1.63 7.55 -51.93 -0.39 1.24 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 31 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.40 3.75 9.10 45.56 0.41 4.17 16 33 H 0.09 1.34 7.65 -51.93 -0.40 0.94 16 34 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 35 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.40 4.52 7.59 -40.82 -0.31 4.21 16 38 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -32.27 366.99 -7.57 -39.84 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -3.84 Total: 14.29 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -1.18 Total: 13.82 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.01 Total: -41.82 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.67 Total: -44.04 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.27 -7.57 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.575 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds