Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48495 * 109.47395 * 240.00159 * 3 2 1 5 5 H 1.48507 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47155 * 119.99703 * 3 2 1 7 7 C 1.38945 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00687 * 157.80613 * 7 2 1 9 9 N 1.37108 * 119.99771 * 337.81134 * 7 2 1 10 10 C 1.46504 * 119.99714 * 326.01339 * 9 7 2 11 11 C 1.52998 * 109.46557 * 264.53905 * 10 9 7 12 12 C 1.50702 * 109.46995 * 180.02562 * 11 10 9 13 13 O 1.20835 * 119.99869 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00331 * 180.02562 * 12 11 10 15 15 C 1.34772 * 120.00076 * 146.01024 * 9 7 2 16 16 O 1.21292 * 119.99741 * 179.97438 * 15 9 7 17 17 C 1.50704 * 120.00182 * 0.02562 * 15 9 7 18 18 C 1.52997 * 109.47114 * 179.97438 * 17 15 9 19 19 N 1.46502 * 109.46944 * 179.97438 * 18 17 15 20 20 C 1.34772 * 120.00012 * 180.02562 * 19 18 17 21 21 O 1.21701 * 120.00239 * 0.02562 * 20 19 18 22 22 C 1.46585 * 120.00113 * 180.02562 * 20 19 18 23 23 C 1.36646 * 125.46029 * 179.97438 * 22 20 19 24 24 C 1.37466 * 113.30019 * 179.97438 * 23 22 20 25 25 C 1.33820 * 115.09943 * 0.02562 * 24 23 22 26 26 S 1.70613 * 110.95570 * 359.97438 * 25 24 23 27 27 H 0.96998 * 120.00420 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46974 * 24.53626 * 10 9 7 29 29 H 1.09000 * 109.46708 * 144.54053 * 10 9 7 30 30 H 1.09002 * 109.47520 * 299.99669 * 11 10 9 31 31 H 1.09000 * 109.47490 * 60.00627 * 11 10 9 32 32 H 0.96702 * 116.99931 * 180.02562 * 14 12 11 33 33 H 1.09001 * 109.46993 * 59.99556 * 17 15 9 34 34 H 1.09005 * 109.46699 * 300.00077 * 17 15 9 35 35 H 1.09006 * 109.46936 * 60.00253 * 18 17 15 36 36 H 1.08996 * 109.47471 * 300.00027 * 18 17 15 37 37 H 0.97005 * 120.00110 * 0.02562 * 19 18 17 38 38 H 1.08005 * 123.34986 * 0.27691 * 23 22 20 39 39 H 1.08001 * 122.45381 * 180.02562 * 24 23 22 40 40 H 1.08005 * 124.51918 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0288 -1.2378 -0.3538 9 7 1.3996 -2.3469 0.4474 10 6 0.4286 -2.2788 1.5424 11 6 1.1316 -2.5828 2.8668 12 6 0.1328 -2.5134 3.9932 13 8 -1.0227 -2.2476 3.7604 14 8 0.5269 -2.7459 5.2550 15 6 1.6938 -3.5336 -0.1196 16 8 1.1550 -4.5453 0.2770 17 6 2.6929 -3.6037 -1.2457 18 6 2.8429 -5.0554 -1.7048 19 7 3.8138 -5.1234 -2.7998 20 6 4.1079 -6.3101 -3.3669 21 8 3.5667 -7.3252 -2.9697 22 6 5.0797 -6.3782 -4.4622 23 6 5.4601 -7.5169 -5.1148 24 6 6.3884 -7.2927 -6.1036 25 6 6.7572 -6.0155 -6.2567 26 16 5.9425 -5.0077 -5.1470 27 1 -0.4851 0.8400 0.0004 28 1 -0.0048 -1.2795 1.5820 29 1 -0.3611 -3.0110 1.3737 30 1 1.5651 -3.5821 2.8272 31 1 1.9213 -1.8506 3.0355 32 1 -0.1497 -2.6903 5.9436 33 1 3.6570 -3.2309 -0.8996 34 1 2.3449 -2.9928 -2.0787 35 1 1.8789 -5.4285 -2.0507 36 1 3.1911 -5.6659 -0.8716 37 1 4.2449 -4.3143 -3.1167 38 1 5.0667 -8.4951 -4.8805 39 1 6.7906 -8.0890 -6.7123 40 1 7.4743 -5.6688 -6.9862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -153.395600 kcal Electronic energy + Delta-G solvation = -26179.024333 eV Core-core repulsion = 22084.663929 eV Total energy + Delta-G solvation = -4094.360404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36294 -40.94304 -40.33937 -38.43804 -37.30303 -36.89161 -36.16751 -33.81992 -32.91686 -31.81483 -30.33744 -27.08104 -26.72558 -25.58477 -23.99912 -22.36629 -21.99939 -21.02954 -20.29169 -19.69554 -19.20096 -18.38935 -17.96407 -17.57962 -17.11011 -16.92402 -16.84632 -16.76615 -16.26292 -15.86898 -15.84541 -15.66152 -14.76593 -14.68171 -14.30804 -14.26214 -14.03160 -13.77724 -13.66191 -13.47696 -13.19380 -13.03895 -12.87061 -12.78145 -12.56853 -12.45008 -12.29205 -12.10528 -11.92494 -11.89868 -11.66662 -11.32411 -11.01913 -10.43110 -10.34142 -9.82180 -9.56943 -9.50368 -8.28899 -6.04530 -0.48430 0.50550 0.95883 1.18183 1.42693 1.47806 1.55755 1.63707 1.89222 1.94643 2.13049 2.14392 2.39180 3.07512 3.12085 3.72513 3.96990 3.99060 4.12160 4.16929 4.17240 4.33822 4.37573 4.51133 4.57274 4.67663 4.75944 4.94589 4.95941 5.02058 5.05860 5.24506 5.28360 5.36873 5.38274 5.52311 5.59450 5.94873 6.37290 6.40576 6.99384 7.04497 7.12988 7.54378 7.98460 8.73489 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.002576 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.626467 B =10867.301017 C =12523.508468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.002 3.998 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.359 4.359 8 H 0.118 0.882 9 N -0.445 5.445 10 C 0.129 3.871 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.459 3.541 16 O -0.634 6.634 17 C -0.115 4.115 18 C 0.150 3.850 19 N -0.711 5.711 20 C 0.584 3.416 21 O -0.579 6.579 22 C -0.304 4.304 23 C -0.060 4.060 24 C -0.160 4.160 25 C -0.216 4.216 26 S 0.240 5.760 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.427 0.573 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.187 -3.125 -7.973 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.201 4.201 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.135 0.865 9 N -0.162 5.162 10 C 0.005 3.995 11 C -0.155 4.155 12 C 0.337 3.663 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.249 3.751 16 O -0.522 6.522 17 C -0.155 4.155 18 C 0.026 3.974 19 N -0.363 5.363 20 C 0.372 3.628 21 O -0.461 6.461 22 C -0.424 4.424 23 C -0.095 4.095 24 C -0.190 4.190 25 C -0.354 4.354 26 S 0.507 5.493 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.288 0.712 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.163 0.837 39 H 0.188 0.812 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 15.379 -2.519 -7.554 17.318 hybrid contribution -0.743 -0.529 0.207 0.935 sum 14.636 -3.048 -7.347 16.658 Atomic orbital electron populations 1.70065 1.08184 1.28905 1.45629 1.26260 0.95485 1.03249 0.95147 0.85151 0.77909 0.76447 0.79916 1.17881 1.22058 1.18938 1.19911 0.98144 0.85044 1.45504 0.86503 1.43647 1.37883 1.06328 1.28369 1.20974 0.90727 1.03407 0.84405 1.21625 0.97850 1.05602 0.90457 1.23417 0.88024 0.70936 0.83892 1.90708 1.22099 1.46177 1.85121 1.84504 1.47428 1.82695 1.17446 1.20919 0.85824 0.83452 0.84890 1.90558 1.57918 1.36325 1.67438 1.21403 1.00360 0.95827 0.97944 1.20806 0.91501 0.96571 0.88508 1.45741 1.44477 1.09367 1.36680 1.17413 0.80866 0.83178 0.81357 1.90810 1.54483 1.35949 1.64842 1.24524 1.10016 1.00720 1.07174 1.21032 0.95782 0.98551 0.94106 1.20237 1.00006 0.98210 1.00532 1.25825 1.06339 0.97761 1.05475 1.82940 1.32745 1.07344 1.26266 0.91942 0.88413 0.95143 0.88053 0.86195 0.71171 0.86647 0.87803 0.93260 0.92267 0.75105 0.83726 0.81203 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.02 11.34 21.66 0.25 -45.77 16 2 C 0.00 0.10 4.92 84.93 0.42 0.52 16 3 Si 0.98 35.82 29.61 68.60 2.03 37.85 16 4 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 5 H -0.29 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.36 -16.10 8.70 84.04 0.73 -15.37 16 8 H 0.12 4.59 6.97 -2.91 -0.02 4.57 16 9 N -0.44 -20.90 2.56 -635.54 -1.63 -22.53 16 10 C 0.13 6.22 4.19 86.38 0.36 6.58 16 11 C -0.12 -4.50 6.10 29.85 0.18 -4.32 16 12 C 0.49 17.86 8.33 71.24 0.59 18.46 16 13 O -0.55 -23.84 16.74 21.94 0.37 -23.47 16 14 O -0.51 -13.42 13.42 -51.39 -0.69 -14.11 16 15 C 0.46 20.90 7.60 87.66 0.67 21.56 16 16 O -0.63 -32.85 15.65 -3.07 -0.05 -32.90 16 17 C -0.12 -3.97 4.47 29.85 0.13 -3.84 16 18 C 0.15 5.24 4.96 86.38 0.43 5.67 16 19 N -0.71 -20.00 5.55 -467.17 -2.59 -22.59 16 20 C 0.58 18.27 7.78 86.42 0.67 18.94 16 21 O -0.58 -23.28 16.84 -4.35 -0.07 -23.36 16 22 C -0.30 -7.15 6.45 24.08 0.16 -6.99 16 23 C -0.06 -1.25 10.01 21.71 0.22 -1.03 16 24 C -0.16 -2.21 10.15 21.08 0.21 -2.00 16 25 C -0.22 -2.45 10.92 66.82 0.73 -1.72 16 26 S 0.24 3.54 22.16 -56.49 -1.25 2.29 16 27 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 28 H 0.10 5.14 5.31 -2.39 -0.01 5.12 16 29 H 0.03 1.62 7.55 -2.39 -0.02 1.60 16 30 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 32 H 0.43 6.96 9.10 -74.06 -0.67 6.29 16 33 H 0.12 3.31 7.65 -2.39 -0.02 3.29 16 34 H 0.10 3.43 8.10 -2.38 -0.02 3.41 16 35 H 0.05 1.98 8.10 -2.38 -0.02 1.96 16 36 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 37 H 0.41 8.79 7.59 -92.70 -0.70 8.08 16 38 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -74.04 366.99 1.60 -72.44 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.26 Total: 35.69 kcal Atomic # 6 Polarization: 30.96 SS G_CDS: 5.50 Total: 36.46 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -3.97 Total: -90.89 kcal Atomic # 8 Polarization: -93.39 SS G_CDS: -0.44 Total: -93.84 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.25 Total: 2.29 kcal Total: -74.04 1.60 -72.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.960 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds