Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.38553 * 119.83020 * 89.99655 * 15 12 11 17 17 C 1.38153 * 120.51963 * 179.88183 * 16 15 12 18 18 C 1.38460 * 119.90873 * 359.97438 * 17 16 15 19 19 C 1.40400 * 119.69377 * 0.18544 * 18 17 16 20 20 C 1.37920 * 119.83087 * 269.72692 * 15 12 11 21 21 C 1.47522 * 119.00541 * 179.69045 * 19 18 17 22 22 O 1.21589 * 120.61038 * 227.90164 * 21 19 18 23 23 N 1.35469 * 118.77996 * 47.93134 * 21 19 18 24 24 C 1.46397 * 119.55042 * 4.91160 * 23 21 19 25 25 C 1.52286 * 110.79184 * 284.96834 * 24 23 21 26 26 O 1.35654 * 121.04421 * 180.55348 * 18 17 16 27 27 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 29 29 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 30 30 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 31 31 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 32 32 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 33 33 H 1.08001 * 119.73784 * 359.91382 * 16 15 12 34 34 H 1.08004 * 120.04283 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.16356 * 0.03481 * 20 15 12 36 36 H 0.97004 * 120.22462 * 184.93058 * 23 21 19 37 37 H 1.08994 * 109.21276 * 45.30059 * 24 23 21 38 38 H 1.09000 * 109.21642 * 164.67611 * 24 23 21 39 39 H 1.09000 * 109.04952 * 165.68989 * 25 24 23 40 40 H 1.09003 * 109.04721 * 284.65615 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 3.1504 -7.3374 2.0322 17 6 4.0771 -7.5614 3.0320 18 6 5.3620 -7.0607 2.9072 19 6 5.7134 -6.3240 1.7648 20 6 4.7714 -6.1099 0.7604 21 6 7.0845 -5.7917 1.6507 22 8 7.2746 -4.6336 1.3329 23 7 8.1279 -6.6172 1.9058 24 6 7.8779 -8.0334 2.1800 25 6 7.3169 -8.2215 3.5832 26 8 6.2934 -7.2763 3.8696 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5568 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 0.5677 -4.9451 0.2190 33 1 2.1492 -7.7300 2.1320 34 1 3.7998 -8.1263 3.9098 35 1 5.0384 -5.5493 -0.1233 36 1 9.0345 -6.2722 1.9071 37 1 7.1628 -8.4186 1.4532 38 1 8.8130 -8.5865 2.0912 39 1 6.9066 -9.2275 3.6704 40 1 8.1227 -8.1020 4.3075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622020148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -116.774381 kcal Electronic energy + Delta-G solvation = -27408.634147 eV Core-core repulsion = 23315.861759 eV Total energy + Delta-G solvation = -4092.772388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45706 -38.84325 -38.17166 -37.10942 -35.71536 -35.41093 -35.35829 -32.71799 -31.69923 -31.38012 -29.37472 -29.12686 -25.23844 -24.47673 -24.02797 -22.56875 -21.31769 -21.02194 -19.35899 -18.41203 -18.05440 -17.54291 -17.24108 -17.02777 -16.32980 -16.22706 -16.07274 -15.57906 -15.00801 -14.64093 -14.44821 -14.39965 -14.04990 -13.95118 -13.91627 -13.57379 -13.35492 -12.70656 -12.54531 -12.44217 -12.03201 -11.95258 -11.84640 -11.77631 -11.27205 -11.20284 -11.04889 -10.90055 -10.60121 -10.44660 -10.28819 -9.57243 -9.56038 -9.47278 -9.41539 -9.23297 -8.94887 -8.37452 -6.04571 -4.07490 0.14574 0.56540 0.71396 2.24868 2.58161 2.88372 3.14304 3.31380 3.33919 3.39954 3.45244 3.86798 3.94077 4.14790 4.21003 4.28286 4.45606 4.55446 4.68050 4.73011 4.81489 5.01277 5.06559 5.08592 5.32546 5.36682 5.44373 5.66892 5.73468 5.74811 6.13036 6.20799 6.37813 6.47328 6.63240 6.73126 6.86740 7.37249 7.58722 7.67015 7.79374 7.94184 8.31770 8.98531 9.57300 11.06840 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.003555 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.015119 B = 7874.878490 C = 9400.394531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.019 3.981 10 C 0.115 3.885 11 N -1.107 6.107 12 S 2.694 3.306 13 O -0.967 6.967 14 O -0.955 6.955 15 C -0.687 4.687 16 C 0.020 3.980 17 C -0.157 4.157 18 C 0.179 3.821 19 C -0.186 4.186 20 C 0.049 3.951 21 C 0.574 3.426 22 O -0.509 6.509 23 N -0.725 5.725 24 C 0.069 3.931 25 C 0.046 3.954 26 O -0.324 6.324 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.418 0.582 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.409 0.591 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 -22.341 7.732 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.020 4.020 10 C -0.010 4.010 11 N -0.869 5.869 12 S 2.781 3.219 13 O -0.957 6.957 14 O -0.944 6.944 15 C -0.771 4.771 16 C 0.001 3.999 17 C -0.176 4.176 18 C 0.134 3.866 19 C -0.191 4.191 20 C 0.029 3.971 21 C 0.360 3.640 22 O -0.383 6.383 23 N -0.381 5.381 24 C -0.056 4.056 25 C -0.029 4.029 26 O -0.240 6.240 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.173 0.827 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.460 -22.122 6.988 26.822 hybrid contribution 0.894 1.081 0.843 1.636 sum 14.354 -21.041 7.831 26.648 Atomic orbital electron populations 1.69958 1.06072 1.26837 1.50392 1.24989 0.94875 0.99367 0.95011 0.86537 0.79877 0.83072 0.78232 1.20529 1.21229 1.19689 1.21107 0.93308 0.90461 1.51364 0.92151 1.19277 0.93987 0.90472 0.98237 1.21730 0.96176 0.82446 1.00614 1.55477 1.21415 1.22017 1.88035 1.01921 0.73263 0.72742 0.73944 1.93562 1.59737 1.55408 1.86991 1.93597 1.73714 1.85143 1.41996 1.31292 1.13363 1.13346 1.19110 1.21027 0.99587 0.89814 0.89482 1.21227 0.92779 1.02728 1.00861 1.18984 0.89661 0.91269 0.86661 1.20346 0.95889 1.05170 0.97672 1.20846 0.89541 0.89927 0.96757 1.18255 0.84599 0.85273 0.75873 1.90913 1.85399 1.16674 1.45362 1.45855 1.09657 1.09078 1.73473 1.22047 1.03736 0.82899 0.96931 1.23265 0.89703 0.92111 0.97810 1.85896 1.37856 1.61518 1.38779 0.92869 0.95500 0.95734 0.92775 0.91124 0.74651 0.82942 0.83532 0.82725 0.75391 0.90031 0.87470 0.90719 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.47 5.12 -27.88 -0.14 0.33 16 10 C 0.11 2.29 6.16 -4.04 -0.02 2.26 16 11 N -1.11 -18.02 6.00 -10.61 -0.06 -18.08 16 12 S 2.69 40.57 5.73 -107.50 -0.62 39.96 16 13 O -0.97 -15.31 17.26 -57.17 -0.99 -16.30 16 14 O -0.95 -17.07 16.74 -57.17 -0.96 -18.03 16 15 C -0.69 -9.08 5.94 -39.58 -0.24 -9.31 16 16 C 0.02 0.22 9.50 -39.50 -0.38 -0.16 16 17 C -0.16 -1.54 10.00 -39.53 -0.40 -1.93 16 18 C 0.18 2.00 5.54 -38.69 -0.21 1.79 16 19 C -0.19 -2.45 4.83 -104.88 -0.51 -2.95 16 20 C 0.05 0.69 9.25 -39.28 -0.36 0.33 16 21 C 0.57 7.76 7.25 -12.16 -0.09 7.67 16 22 O -0.51 -9.07 17.92 5.29 0.09 -8.97 16 23 N -0.73 -6.20 5.44 -61.62 -0.33 -6.54 16 24 C 0.07 0.35 6.28 -4.46 -0.03 0.32 16 25 C 0.05 0.24 6.98 36.79 0.26 0.50 16 26 O -0.32 -3.17 9.91 -18.66 -0.18 -3.35 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.42 7.76 -51.93 -0.40 1.02 16 32 H 0.42 6.18 8.65 -34.47 -0.30 5.88 16 33 H 0.15 1.34 7.59 -52.49 -0.40 0.95 16 34 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.16 2.22 7.60 -52.49 -0.40 1.82 16 36 H 0.41 2.76 8.95 -40.82 -0.37 2.40 16 37 H 0.08 0.46 7.44 -51.93 -0.39 0.07 16 38 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -37.48 355.52 -9.25 -46.73 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.75 Total: 2.62 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.53 Total: -14.45 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.34 Total: -50.27 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -2.03 Total: -46.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 40.57 SS G_CDS: -0.62 Total: 39.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.48 -9.25 -46.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622020148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.042 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds