Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47248 * 296.74681 * 3 2 1 5 5 C 1.36909 * 119.99651 * 131.74744 * 4 3 2 6 6 H 1.07999 * 119.99716 * 216.22015 * 5 4 3 7 7 C 1.39018 * 120.00301 * 36.21878 * 5 4 3 8 8 N 1.31391 * 119.99926 * 36.53735 * 7 5 4 9 9 Si 1.86804 * 120.00140 * 216.53892 * 7 5 4 10 10 H 1.48495 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47094 * 119.99995 * 9 7 5 12 12 H 1.48500 * 109.47118 * 239.99765 * 9 7 5 13 13 C 1.34770 * 120.00138 * 311.74676 * 4 3 2 14 14 O 1.21623 * 119.99955 * 186.86089 * 13 4 3 15 15 C 1.47464 * 120.00210 * 6.86563 * 13 4 3 16 16 C 1.39422 * 120.12051 * 335.42707 * 15 13 4 17 17 C 1.39310 * 119.74560 * 180.02562 * 16 15 13 18 18 C 1.47560 * 120.00941 * 179.97438 * 17 16 15 19 19 C 1.37816 * 125.71642 * 180.02562 * 18 17 16 20 20 C 1.39502 * 107.01668 * 179.97438 * 19 18 17 21 21 C 1.38375 * 106.81515 * 359.97438 * 20 19 18 22 22 C 1.40969 * 125.90058 * 180.02562 * 21 20 19 23 23 O 1.21494 * 120.00325 * 179.97438 * 22 21 20 24 24 O 1.34330 * 125.70830 * 359.68767 * 18 17 16 25 25 C 1.40002 * 119.98919 * 0.02562 * 17 16 15 26 26 C 1.37697 * 120.24957 * 359.97438 * 25 17 16 27 27 C 1.38878 * 120.25475 * 359.72061 * 26 25 17 28 28 O 1.35573 * 119.99817 * 180.27679 * 27 26 25 29 29 H 1.08992 * 109.47708 * 56.75551 * 3 2 1 30 30 H 1.09004 * 109.46579 * 176.75408 * 3 2 1 31 31 H 0.96996 * 119.99752 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.12888 * 359.97438 * 16 15 13 33 33 H 1.08002 * 126.49316 * 359.96904 * 19 18 17 34 34 H 1.07999 * 126.60010 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99748 * 0.02562 * 22 21 20 36 36 H 1.07995 * 119.87753 * 179.97438 * 25 17 16 37 37 H 1.07995 * 119.87209 * 180.02562 * 26 25 17 38 38 H 0.96701 * 113.99977 * 270.27788 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0966 -0.6207 1.2334 5 6 4.0695 -1.5823 1.1765 6 1 4.0457 -2.4158 1.8629 7 6 5.0881 -1.4858 0.2353 8 7 5.5801 -0.3095 -0.0819 9 14 5.7571 -3.0284 -0.5784 10 1 5.0399 -4.2170 -0.0512 11 1 5.5567 -2.9399 -2.0472 12 1 7.2070 -3.1546 -0.2834 13 6 2.5884 -0.2459 2.4240 14 8 3.0780 -0.6679 3.4542 15 6 1.4386 0.6760 2.4777 16 6 1.1908 1.5478 1.4183 17 6 0.1027 2.4157 1.4774 18 6 -0.1646 3.3413 0.3597 19 6 -1.2022 4.2460 0.2949 20 6 -1.0848 4.9154 -0.9234 21 6 0.0264 4.3931 -1.5616 22 6 0.5138 4.7841 -2.8252 23 8 1.5038 4.2515 -3.2859 24 8 0.5665 3.4477 -0.7622 25 6 -0.7365 2.4104 2.5980 26 6 -0.4916 1.5492 3.6441 27 6 0.5866 0.6752 3.5931 28 8 0.8197 -0.1744 4.6235 29 1 2.9716 -0.5625 -0.8594 30 1 2.9707 1.0269 -0.0582 31 1 6.2905 -0.2422 -0.7388 32 1 1.8404 1.5510 0.5555 33 1 -1.9624 4.4063 1.0452 34 1 -1.7358 5.6920 -1.2968 35 1 0.0077 5.5578 -3.3834 36 1 -1.5793 3.0843 2.6421 37 1 -1.1431 1.5499 4.5053 38 1 1.3952 0.1890 5.3104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626567016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = 34.466065 kcal Electronic energy + Delta-G solvation = -29244.200230 eV Core-core repulsion = 25022.542169 eV Total energy + Delta-G solvation = -4221.658062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.094 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71364 -40.57826 -38.80891 -38.12616 -37.25408 -35.83991 -34.63123 -33.44653 -32.33670 -31.64199 -30.80839 -28.78471 -27.87725 -25.44587 -24.63124 -23.38163 -22.17634 -21.72621 -20.65991 -19.86035 -18.22862 -17.98837 -17.69457 -16.94964 -16.42674 -16.32347 -16.13479 -15.72057 -15.47504 -15.01078 -14.92248 -14.68847 -14.07662 -13.98049 -13.75191 -13.46149 -13.39998 -13.11342 -13.03441 -12.91420 -12.39880 -12.26246 -12.09742 -12.00359 -11.60152 -11.36293 -11.23688 -11.00902 -10.70714 -10.44930 -10.25793 -10.23269 -10.21230 -9.37006 -9.11857 -8.71571 -8.55953 -7.94707 -7.79314 -6.68084 -4.11816 0.22907 1.09881 1.22436 2.28250 2.53436 2.82876 2.97046 3.09831 3.18010 3.21213 3.28016 3.52119 3.98507 4.05709 4.17081 4.35989 4.38130 4.48474 4.57358 4.61606 4.84021 4.89027 4.91498 5.00166 5.31983 5.35682 5.41943 5.51176 5.64692 5.76713 5.86667 5.88778 6.03316 6.15190 6.22315 6.28281 6.42196 6.71574 6.74526 7.32194 7.37947 7.88785 7.94019 7.97517 8.21126 8.92280 9.05000 9.69650 10.37160 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004938 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.223015 B = 5668.774054 C = 7995.263298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.199 3.801 3 C 0.196 3.804 4 N -0.423 5.423 5 C -0.334 4.334 6 H 0.102 0.898 7 C 0.055 3.945 8 N -0.828 5.828 9 Si 0.903 3.097 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.500 3.500 14 O -0.551 6.551 15 C -0.147 4.147 16 C -0.077 4.077 17 C -0.063 4.063 18 C 0.105 3.895 19 C -0.225 4.225 20 C -0.112 4.112 21 C -0.140 4.140 22 C 0.403 3.597 23 O -0.452 6.452 24 O -0.135 6.135 25 C -0.055 4.055 26 C -0.163 4.163 27 C 0.180 3.820 28 O -0.480 6.480 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.275 0.725 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 12.370 -1.178 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.115 4.115 3 C 0.069 3.931 4 N -0.143 5.143 5 C -0.460 4.460 6 H 0.120 0.880 7 C -0.156 4.156 8 N -0.461 5.461 9 Si 0.727 3.273 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.290 3.710 14 O -0.432 6.432 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.064 4.064 18 C 0.051 3.949 19 C -0.244 4.244 20 C -0.131 4.131 21 C -0.190 4.190 22 C 0.263 3.737 23 O -0.326 6.326 24 O -0.029 6.029 25 C -0.074 4.074 26 C -0.182 4.182 27 C 0.133 3.867 28 O -0.292 6.292 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.857 11.382 -1.458 17.233 hybrid contribution 0.807 -0.119 -0.184 0.836 sum -12.050 11.263 -1.641 16.576 Atomic orbital electron populations 1.81182 1.12948 1.09012 1.08098 1.29464 0.96395 0.92488 0.93195 1.19604 0.78778 1.01629 0.93058 1.43249 1.33784 1.35958 1.01288 1.19345 1.03839 1.01681 1.21163 0.88017 1.25409 0.94413 0.97555 0.98250 1.70225 1.22353 1.24905 1.28599 0.86283 0.78795 0.82953 0.79258 1.18655 1.20059 1.20439 1.17802 0.84825 0.83631 0.84788 1.90625 1.62389 1.57748 1.32477 1.20754 0.98212 1.00365 0.95827 1.22698 0.96499 0.92140 0.98239 1.17478 0.98799 0.97746 0.92369 1.21296 0.91174 0.96451 0.86025 1.21875 1.01787 1.00365 1.00337 1.22337 0.96458 1.00014 0.94326 1.22429 1.00293 0.98393 0.97924 1.21917 0.84507 0.84394 0.82904 1.90688 1.23230 1.50088 1.68609 1.84236 1.46635 1.47128 1.24927 1.20865 0.97508 0.97720 0.91288 1.21181 0.99784 0.96834 1.00382 1.18630 0.91908 0.87846 0.88312 1.84631 1.71097 1.40862 1.32575 0.86194 0.87495 0.91499 0.81524 0.82404 0.81906 0.85199 0.85064 0.84498 0.74310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.72 16.65 42.03 0.70 -8.02 16 2 C 0.20 3.94 10.24 -20.82 -0.21 3.73 16 3 C 0.20 4.00 4.85 -6.83 -0.03 3.97 16 4 N -0.42 -10.18 2.78 -119.16 -0.33 -10.51 16 5 C -0.33 -8.64 8.72 -15.00 -0.13 -8.78 16 6 H 0.10 2.79 7.93 -52.49 -0.42 2.37 16 7 C 0.05 1.33 4.35 -17.45 -0.08 1.25 16 8 N -0.83 -20.61 13.20 55.50 0.73 -19.88 16 9 Si 0.90 18.78 29.68 -169.99 -5.04 13.74 16 10 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.50 12.11 7.22 -12.50 -0.09 12.02 16 14 O -0.55 -14.78 15.46 -15.03 -0.23 -15.01 16 15 C -0.15 -2.96 4.96 -104.90 -0.52 -3.48 16 16 C -0.08 -1.42 5.14 -38.80 -0.20 -1.62 16 17 C -0.06 -1.00 5.12 -105.04 -0.54 -1.53 16 18 C 0.10 1.54 7.05 -35.94 -0.25 1.28 16 19 C -0.22 -2.50 10.25 -39.26 -0.40 -2.90 16 20 C -0.11 -1.06 10.86 -39.06 -0.42 -1.48 16 21 C -0.14 -1.74 6.94 -38.50 -0.27 -2.01 16 22 C 0.40 4.33 11.38 31.77 0.36 4.69 16 23 O -0.45 -7.14 17.89 -5.49 -0.10 -7.24 16 24 O -0.14 -2.17 10.35 -7.40 -0.08 -2.25 16 25 C -0.06 -0.74 9.54 -39.12 -0.37 -1.11 16 26 C -0.16 -2.29 9.96 -39.54 -0.39 -2.69 16 27 C 0.18 3.20 6.70 -38.55 -0.26 2.95 16 28 O -0.48 -8.50 11.86 -38.70 -0.46 -8.96 16 29 H 0.12 2.38 7.29 -51.93 -0.38 2.00 16 30 H 0.11 2.09 6.37 -51.93 -0.33 1.76 16 31 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.17 3.15 2.88 -53.44 -0.15 2.99 16 33 H 0.16 1.30 7.24 -52.49 -0.38 0.92 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 1.27 6.95 -52.49 -0.36 0.90 16 37 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.40 5.49 9.05 45.56 0.41 5.91 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -34.33 342.62 -5.47 -39.81 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.02 Total: 8.86 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.81 Total: 4.29 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 1.10 Total: -38.40 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.87 Total: -33.46 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.04 Total: 13.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.33 -5.47 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.272 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds