Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99526 * 2 1 4 4 H 1.48500 * 109.47132 * 269.99978 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99962 * 3 2 1 6 6 H 1.48501 * 109.46910 * 150.00240 * 3 2 1 7 7 C 1.37875 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00283 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47312 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47188 * 180.02562 * 10 9 7 12 12 O 1.42096 * 110.54614 * 68.37645 * 11 10 9 13 13 O 1.42108 * 110.54341 * 291.62356 * 11 10 9 14 14 N 1.65598 * 104.44789 * 180.02562 * 11 10 9 15 15 C 1.46933 * 120.63112 * 260.16396 * 14 11 10 16 16 C 1.53185 * 108.77625 * 126.39293 * 15 14 11 17 17 C 1.53037 * 109.31562 * 54.63828 * 16 15 14 18 18 C 1.53043 * 109.53505 * 298.63642 * 17 16 15 19 19 C 1.46927 * 120.63624 * 80.16521 * 14 11 10 20 20 H 1.09001 * 109.70500 * 113.74847 * 19 14 11 21 21 C 1.53005 * 109.58271 * 353.39796 * 19 14 11 22 22 S 1.81396 * 109.46863 * 188.04494 * 21 19 14 23 23 N 1.65597 * 104.44897 * 187.25106 * 22 21 19 24 24 O 1.42098 * 110.54545 * 75.62742 * 22 21 19 25 25 O 1.42103 * 110.54628 * 298.87364 * 22 21 19 26 26 H 0.96993 * 120.00338 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47111 * 59.99810 * 9 7 2 28 28 H 1.09001 * 109.47215 * 300.00312 * 9 7 2 29 29 H 1.08998 * 109.47046 * 60.00303 * 10 9 7 30 30 H 1.09000 * 109.47486 * 299.99909 * 10 9 7 31 31 H 1.09004 * 109.58234 * 6.60500 * 15 14 11 32 32 H 1.09000 * 109.58545 * 246.18194 * 15 14 11 33 33 H 1.09005 * 109.49666 * 294.68366 * 16 15 14 34 34 H 1.08999 * 109.52247 * 174.60884 * 16 15 14 35 35 H 1.09004 * 109.46484 * 178.61522 * 17 16 15 36 36 H 1.08998 * 109.44624 * 58.64710 * 17 16 15 37 37 H 1.09000 * 109.49609 * 301.41030 * 18 17 16 38 38 H 1.09007 * 109.49597 * 181.31753 * 18 17 16 39 39 H 1.08995 * 109.47062 * 68.04595 * 21 19 14 40 40 H 1.08997 * 109.46705 * 308.03904 * 21 19 14 41 41 H 0.96999 * 120.00191 * 359.97438 * 23 22 21 42 42 H 0.96998 * 120.00340 * 179.72608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 16 5.8357 -2.6361 -0.0009 12 8 6.3343 -2.1457 1.2360 13 8 6.3344 -2.1458 -1.2380 14 7 6.2490 -4.2397 -0.0015 15 6 6.6449 -4.9112 1.2440 16 6 5.7762 -6.1593 1.4290 17 6 5.8805 -7.0382 0.1805 18 6 5.3627 -6.2650 -1.0345 19 6 6.2268 -5.0182 -1.2474 20 1 7.2410 -5.3173 -1.5120 21 6 5.6327 -4.1684 -2.3726 22 16 5.3861 -5.2003 -3.8439 23 7 4.9378 -4.1322 -5.0273 24 8 4.2507 -6.0388 -3.6803 25 8 6.6258 -5.7261 -4.2978 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6802 0.8889 28 1 3.8746 -0.6798 -0.8911 29 1 3.6581 -3.1503 -0.8907 30 1 3.6588 -3.1500 0.8892 31 1 6.4976 -4.2352 2.0863 32 1 7.6939 -5.2016 1.1850 33 1 4.7384 -5.8612 1.5784 34 1 6.1227 -6.7188 2.2978 35 1 5.2826 -7.9390 0.3195 36 1 6.9221 -7.3153 0.0178 37 1 4.3289 -5.9660 -0.8618 38 1 5.4155 -6.8997 -1.9191 39 1 6.3154 -3.3528 -2.6110 40 1 4.6751 -3.7587 -2.0515 41 1 4.8655 -3.1863 -4.8249 42 1 4.7510 -4.4519 -5.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656438194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -140.843337 kcal Electronic energy + Delta-G solvation = -27680.692872 eV Core-core repulsion = 23722.320726 eV Total energy + Delta-G solvation = -3958.372145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.18602 -37.20075 -37.12469 -36.08107 -35.79469 -34.12914 -33.33570 -33.30153 -32.47010 -31.59597 -27.97054 -26.17500 -24.39759 -22.91020 -21.50219 -20.41867 -19.63546 -18.95374 -18.03402 -17.79021 -17.34441 -16.91351 -16.46030 -15.98135 -15.74689 -15.18855 -14.93279 -14.83621 -14.72773 -14.39715 -14.30381 -13.82564 -13.73404 -13.10651 -12.87461 -12.43179 -12.33468 -12.26548 -12.08764 -12.05473 -11.96738 -11.87848 -11.78952 -11.53968 -11.36033 -11.29671 -11.22491 -10.94165 -10.89609 -10.55956 -10.54147 -10.40077 -10.20359 -9.82585 -9.51832 -9.03323 -8.75010 -6.24528 -4.26929 0.03849 0.43553 2.60225 2.73996 3.18160 3.26819 3.29588 3.39510 3.82978 3.92665 4.20041 4.25969 4.27206 4.41864 4.58319 4.72502 4.81544 4.84751 4.99919 5.05850 5.09780 5.29498 5.36032 5.40608 5.46249 5.54445 5.61148 5.70545 5.83133 5.84951 5.89294 5.99287 6.09738 6.16138 6.41237 6.67717 6.79953 6.91845 7.44448 8.27581 8.76571 9.34331 10.87654 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.004842 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.513028 B = 5781.514364 C = 6927.097801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.589 4.589 11 S 2.588 3.412 12 O -0.959 6.959 13 O -0.964 6.964 14 N -0.995 5.995 15 C 0.117 3.883 16 C -0.140 4.140 17 C -0.111 4.111 18 C -0.165 4.165 19 C 0.186 3.814 20 H 0.099 0.901 21 C -0.696 4.696 22 S 2.627 3.373 23 N -1.251 6.251 24 O -0.957 6.957 25 O -0.963 6.963 26 H 0.267 0.733 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.197 0.803 40 H 0.142 0.858 41 H 0.418 0.582 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 -12.290 -3.516 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.722 4.722 11 S 2.688 3.312 12 O -0.950 6.950 13 O -0.954 6.954 14 N -0.832 5.832 15 C -0.008 4.008 16 C -0.179 4.179 17 C -0.149 4.149 18 C -0.205 4.205 19 C 0.078 3.922 20 H 0.117 0.883 21 C -0.824 4.824 22 S 2.717 3.283 23 N -0.925 5.925 24 O -0.947 6.947 25 O -0.952 6.952 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.214 0.786 40 H 0.160 0.840 41 H 0.245 0.755 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.695 -12.543 -3.441 18.887 hybrid contribution -0.579 1.514 -0.035 1.622 sum 13.115 -11.028 -3.476 17.485 Atomic orbital electron populations 1.69871 1.06200 1.27348 1.49576 1.24979 0.94805 0.99111 0.94080 0.86951 0.80708 0.83807 0.79131 1.19639 1.20654 1.18688 1.20828 0.87644 0.94997 1.52677 0.90294 1.19425 1.00095 0.87115 0.97928 1.30546 1.21202 1.09403 1.11022 1.05723 0.79178 0.72230 0.74057 1.93537 1.78947 1.77519 1.44974 1.93411 1.79066 1.78405 1.44522 1.57875 1.83346 1.29118 1.12820 1.21511 0.98881 0.94935 0.85446 1.21982 1.01328 0.96377 0.98173 1.21397 1.01703 0.98105 0.93682 1.22488 1.01529 0.96082 1.00351 1.20380 1.00238 0.89944 0.81669 0.88303 1.31689 1.13747 1.18253 1.18712 1.04408 0.74829 0.73821 0.75269 1.53023 1.89895 1.23020 1.26572 1.93637 1.51400 1.63923 1.85692 1.93607 1.46187 1.76762 1.78658 0.92275 0.94872 0.95373 0.85793 0.85136 0.88209 0.90947 0.90852 0.90373 0.90929 0.91390 0.89083 0.90606 0.78614 0.83969 0.75484 0.75040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -13.96 9.66 -34.44 -0.33 -14.30 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.14 4.05 -27.89 -0.11 -0.25 16 10 C -0.59 -10.07 5.84 37.15 0.22 -9.85 16 11 S 2.59 40.92 4.82 -107.50 -0.52 40.40 16 12 O -0.96 -17.71 16.43 -57.54 -0.95 -18.65 16 13 O -0.96 -15.97 14.02 -57.54 -0.81 -16.77 16 14 N -0.99 -12.16 3.21 -106.47 -0.34 -12.50 16 15 C 0.12 1.20 6.37 -3.71 -0.02 1.17 16 16 C -0.14 -1.19 6.08 -26.62 -0.16 -1.35 16 17 C -0.11 -0.94 5.88 -26.69 -0.16 -1.09 16 18 C -0.17 -1.69 4.41 -26.61 -0.12 -1.81 16 19 C 0.19 2.06 3.08 -67.60 -0.21 1.85 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.70 -7.81 4.21 37.16 0.16 -7.66 16 22 S 2.63 29.07 4.94 -107.50 -0.53 28.54 16 23 N -1.25 -10.80 9.43 60.35 0.57 -10.23 16 24 O -0.96 -13.12 16.41 -57.54 -0.94 -14.07 16 25 O -0.96 -12.97 18.10 -57.54 -1.04 -14.01 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 28 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 29 H 0.12 1.86 5.82 -51.93 -0.30 1.56 16 30 H 0.13 2.05 8.14 -51.92 -0.42 1.63 16 31 H 0.10 1.07 6.82 -51.93 -0.35 0.72 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.75 6.19 -51.92 -0.32 0.43 16 39 H 0.20 2.16 5.63 -51.93 -0.29 1.87 16 40 H 0.14 1.54 4.83 -51.93 -0.25 1.28 16 41 H 0.42 2.91 8.83 -34.47 -0.30 2.60 16 42 H 0.42 2.96 8.96 -34.47 -0.31 2.65 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -36.76 347.89 -9.92 -46.68 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.87 Total: 6.18 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -0.84 Total: -31.35 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 1.00 Total: -48.18 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -3.74 Total: -63.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 69.99 SS G_CDS: -1.05 Total: 68.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.76 -9.92 -46.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656438194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.159 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds