Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99526 * 2 1 4 4 H 1.48500 * 109.47132 * 269.99978 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99962 * 3 2 1 6 6 H 1.48501 * 109.46910 * 150.00240 * 3 2 1 7 7 C 1.37875 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00283 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47312 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47188 * 180.02562 * 10 9 7 12 12 O 1.42096 * 110.54614 * 68.37645 * 11 10 9 13 13 O 1.42108 * 110.54341 * 291.62356 * 11 10 9 14 14 N 1.65598 * 104.44789 * 180.02562 * 11 10 9 15 15 C 1.46933 * 120.63112 * 260.16396 * 14 11 10 16 16 C 1.53185 * 108.77625 * 126.39293 * 15 14 11 17 17 C 1.53037 * 109.31562 * 54.63828 * 16 15 14 18 18 C 1.53043 * 109.53505 * 298.63642 * 17 16 15 19 19 C 1.46927 * 120.63624 * 80.16521 * 14 11 10 20 20 H 1.09001 * 109.70500 * 113.74847 * 19 14 11 21 21 C 1.53005 * 109.58271 * 353.39796 * 19 14 11 22 22 S 1.81396 * 109.46863 * 188.04494 * 21 19 14 23 23 N 1.65597 * 104.44897 * 187.25106 * 22 21 19 24 24 O 1.42098 * 110.54545 * 75.62742 * 22 21 19 25 25 O 1.42103 * 110.54628 * 298.87364 * 22 21 19 26 26 H 0.96993 * 120.00338 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47111 * 59.99810 * 9 7 2 28 28 H 1.09001 * 109.47215 * 300.00312 * 9 7 2 29 29 H 1.08998 * 109.47046 * 60.00303 * 10 9 7 30 30 H 1.09000 * 109.47486 * 299.99909 * 10 9 7 31 31 H 1.09004 * 109.58234 * 6.60500 * 15 14 11 32 32 H 1.09000 * 109.58545 * 246.18194 * 15 14 11 33 33 H 1.09005 * 109.49666 * 294.68366 * 16 15 14 34 34 H 1.08999 * 109.52247 * 174.60884 * 16 15 14 35 35 H 1.09004 * 109.46484 * 178.61522 * 17 16 15 36 36 H 1.08998 * 109.44624 * 58.64710 * 17 16 15 37 37 H 1.09000 * 109.49609 * 301.41030 * 18 17 16 38 38 H 1.09007 * 109.49597 * 181.31753 * 18 17 16 39 39 H 1.08995 * 109.47062 * 68.04595 * 21 19 14 40 40 H 1.08997 * 109.46705 * 308.03904 * 21 19 14 41 41 H 0.96999 * 120.00191 * 359.97438 * 23 22 21 42 42 H 0.96998 * 120.00340 * 179.72608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 16 5.8357 -2.6361 -0.0009 12 8 6.3343 -2.1457 1.2360 13 8 6.3344 -2.1458 -1.2380 14 7 6.2490 -4.2397 -0.0015 15 6 6.6449 -4.9112 1.2440 16 6 5.7762 -6.1593 1.4290 17 6 5.8805 -7.0382 0.1805 18 6 5.3627 -6.2650 -1.0345 19 6 6.2268 -5.0182 -1.2474 20 1 7.2410 -5.3173 -1.5120 21 6 5.6327 -4.1684 -2.3726 22 16 5.3861 -5.2003 -3.8439 23 7 4.9378 -4.1322 -5.0273 24 8 4.2507 -6.0388 -3.6803 25 8 6.6258 -5.7261 -4.2978 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6802 0.8889 28 1 3.8746 -0.6798 -0.8911 29 1 3.6581 -3.1503 -0.8907 30 1 3.6588 -3.1500 0.8892 31 1 6.4976 -4.2352 2.0863 32 1 7.6939 -5.2016 1.1850 33 1 4.7384 -5.8612 1.5784 34 1 6.1227 -6.7188 2.2978 35 1 5.2826 -7.9390 0.3195 36 1 6.9221 -7.3153 0.0178 37 1 4.3289 -5.9660 -0.8618 38 1 5.4155 -6.8997 -1.9191 39 1 6.3154 -3.3528 -2.6110 40 1 4.6751 -3.7587 -2.0515 41 1 4.8655 -3.1863 -4.8249 42 1 4.7510 -4.4519 -5.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656438194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -172.297861 kcal Electronic energy + Delta-G solvation = -27682.056842 eV Core-core repulsion = 23722.320726 eV Total energy + Delta-G solvation = -3959.736116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03166 -38.47787 -38.11265 -37.12994 -37.05930 -35.94609 -34.15298 -34.10238 -33.54109 -33.26952 -28.81688 -27.95461 -25.26472 -23.80933 -23.08954 -21.36857 -20.51628 -20.08753 -19.37104 -18.85664 -18.59066 -18.02129 -17.49312 -17.08814 -16.94951 -16.43077 -16.21548 -15.83187 -15.77467 -15.53653 -15.33103 -15.00699 -14.84385 -14.54031 -14.08353 -13.78372 -13.37955 -13.35682 -13.23518 -13.22941 -13.12280 -13.09484 -13.02457 -12.92796 -12.79707 -12.33357 -12.19071 -12.11448 -11.92410 -11.74107 -11.70167 -11.61990 -11.35995 -11.31731 -11.15203 -10.84771 -10.01618 -8.36505 -6.42979 -0.89336 -0.79333 1.31309 1.34384 1.43406 1.53291 1.87675 2.28840 2.50223 2.64810 2.97278 2.99080 3.08375 3.28909 3.55885 3.73220 3.81117 3.93144 4.00522 4.10051 4.13682 4.27116 4.34941 4.53139 4.60714 4.66562 4.78299 4.85255 4.95573 5.04835 5.08301 5.13711 5.19470 5.22904 5.26036 5.45617 5.46890 5.55018 6.16187 6.31563 6.63848 7.21680 8.79006 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.004842 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.513028 B = 5781.514364 C = 6927.097801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.015 3.985 3 Si 0.924 3.076 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.048 0.952 9 C -0.015 4.015 10 C -0.601 4.601 11 S 2.613 3.387 12 O -0.985 6.985 13 O -0.970 6.970 14 N -0.986 5.986 15 C 0.106 3.894 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.173 4.173 19 C 0.177 3.823 20 H 0.120 0.880 21 C -0.702 4.702 22 S 2.650 3.350 23 N -1.244 6.244 24 O -0.985 6.985 25 O -0.985 6.985 26 H 0.269 0.731 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.201 0.799 40 H 0.144 0.856 41 H 0.427 0.573 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -12.715 -3.658 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.746 3.254 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.173 1.173 7 C -0.566 4.566 8 H 0.066 0.934 9 C -0.054 4.054 10 C -0.732 4.732 11 S 2.710 3.290 12 O -0.975 6.975 13 O -0.961 6.961 14 N -0.825 5.825 15 C -0.018 4.018 16 C -0.177 4.177 17 C -0.149 4.149 18 C -0.212 4.212 19 C 0.069 3.931 20 H 0.138 0.862 21 C -0.831 4.831 22 S 2.740 3.260 23 N -0.923 5.923 24 O -0.974 6.974 25 O -0.975 6.975 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.218 0.782 40 H 0.162 0.838 41 H 0.256 0.744 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 15.813 -12.966 -3.592 20.762 hybrid contribution -1.244 1.530 -0.005 1.972 sum 14.569 -11.436 -3.597 18.868 Atomic orbital electron populations 1.70009 1.07977 1.28395 1.51561 1.25866 0.95571 1.02987 0.93966 0.86048 0.79871 0.79386 0.80077 1.18062 1.20274 1.17296 1.21155 0.90247 0.93789 1.51454 0.93394 1.19375 0.97177 0.90716 0.98166 1.30616 1.23732 1.06424 1.12392 1.04814 0.77838 0.73065 0.73240 1.93504 1.78910 1.78812 1.46276 1.93408 1.78599 1.79392 1.44661 1.57616 1.82615 1.28061 1.14213 1.21818 1.00583 0.95263 0.84118 1.21999 1.00567 0.95848 0.99250 1.21450 1.02801 0.98080 0.92551 1.22574 1.01133 0.96009 1.01508 1.20678 1.01668 0.89909 0.80829 0.86191 1.31740 1.14019 1.18409 1.18926 1.03563 0.73842 0.73513 0.75082 1.52813 1.89575 1.23313 1.26578 1.93606 1.52317 1.65342 1.86169 1.93579 1.47105 1.77648 1.79137 0.92139 0.95142 0.94252 0.84212 0.84400 0.88933 0.88669 0.91773 0.88003 0.89929 0.89809 0.89829 0.90386 0.78197 0.83820 0.74385 0.74010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 2 C 0.01 0.83 5.47 84.65 0.46 1.29 16 3 Si 0.92 42.06 27.47 68.60 1.88 43.94 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 7 C -0.53 -28.66 9.66 25.60 0.25 -28.41 16 8 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 9 C -0.02 -0.67 4.05 29.85 0.12 -0.55 16 10 C -0.60 -20.17 5.84 71.98 0.42 -19.75 16 11 S 2.61 78.52 4.82 -56.49 -0.27 78.24 16 12 O -0.98 -35.00 16.43 -127.65 -2.10 -37.09 16 13 O -0.97 -30.27 14.02 -127.65 -1.79 -32.06 16 14 N -0.99 -22.03 3.21 -490.77 -1.58 -23.61 16 15 C 0.11 1.90 6.37 86.36 0.55 2.45 16 16 C -0.14 -1.99 6.08 30.67 0.19 -1.80 16 17 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 18 C -0.17 -3.23 4.41 30.67 0.14 -3.09 16 19 C 0.18 3.52 3.08 44.97 0.14 3.66 16 20 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 21 C -0.70 -14.65 4.21 71.98 0.30 -14.34 16 22 S 2.65 55.40 4.94 -56.49 -0.28 55.12 16 23 N -1.24 -19.80 9.43 37.02 0.35 -19.45 16 24 O -0.99 -26.25 16.41 -127.65 -2.10 -28.35 16 25 O -0.99 -25.15 18.10 -127.65 -2.31 -27.46 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 28 H 0.04 1.63 7.57 -2.39 -0.02 1.61 16 29 H 0.14 4.12 5.82 -2.39 -0.01 4.11 16 30 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 31 H 0.09 1.83 6.82 -2.38 -0.02 1.81 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.43 6.19 -2.38 -0.01 1.41 16 39 H 0.20 4.03 5.63 -2.39 -0.01 4.01 16 40 H 0.14 2.93 4.83 -2.39 -0.01 2.92 16 41 H 0.43 5.29 8.83 -96.75 -0.85 4.43 16 42 H 0.43 5.45 8.96 -96.75 -0.87 4.59 16 Total: -1.00 -78.60 347.89 -5.86 -84.46 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.71 Total: 24.41 kcal Atomic # 6 Polarization: -64.68 SS G_CDS: 2.74 Total: -61.93 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -0.93 Total: -99.29 kcal Atomic # 8 Polarization: -116.67 SS G_CDS: -8.29 Total: -124.96 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Atomic # 16 Polarization: 133.92 SS G_CDS: -0.55 Total: 133.37 kcal Total: -78.60 -5.86 -84.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656438194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.838 kcal (2) G-P(sol) polarization free energy of solvation -78.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds