Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47142 * 239.99892 * 3 2 1 5 5 H 1.48497 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47024 * 120.00207 * 3 2 1 7 7 C 1.38794 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47248 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99984 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00015 * 180.02562 * 11 10 9 14 14 C 1.47861 * 126.92812 * 0.02562 * 13 11 10 15 15 C 1.56021 * 105.11252 * 181.91435 * 14 13 11 16 16 H 1.09005 * 116.25737 * 158.85123 * 15 14 13 17 17 C 1.57086 * 99.59741 * 32.80769 * 15 14 13 18 18 C 1.49284 * 126.92705 * 180.02562 * 13 11 10 19 19 H 1.09004 * 116.12429 * 16.87111 * 18 13 11 20 20 C 1.56019 * 104.12534 * 247.76755 * 18 13 11 21 21 N 1.49702 * 104.08561 * 287.95580 * 15 14 13 22 22 C 1.46902 * 110.99898 * 306.98300 * 21 15 14 23 23 C 1.50695 * 109.47360 * 306.01533 * 22 21 15 24 24 N 1.29418 * 125.69606 * 89.69366 * 23 22 21 25 25 N 1.26405 * 116.47167 * 179.76981 * 24 23 22 26 26 C 1.29418 * 116.47652 * 0.52889 * 25 24 23 27 27 S 1.71217 * 108.60675 * 359.72003 * 26 25 24 28 28 H 0.97006 * 120.00179 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47284 * 60.00570 * 10 9 7 30 30 H 1.08996 * 109.47395 * 300.00351 * 10 9 7 31 31 H 1.09002 * 110.31688 * 63.00905 * 14 13 11 32 32 H 1.09001 * 110.40034 * 300.87037 * 14 13 11 33 33 H 1.09001 * 112.35960 * 64.33517 * 17 15 14 34 34 H 1.09001 * 112.35572 * 191.74259 * 17 15 14 35 35 H 1.08993 * 110.32655 * 47.68994 * 20 18 13 36 36 H 1.08996 * 110.31648 * 169.89852 * 20 18 13 37 37 H 1.09005 * 109.46742 * 66.01584 * 22 21 15 38 38 H 1.09003 * 109.47372 * 186.01419 * 22 21 15 39 39 H 1.07995 * 125.69278 * 179.68008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0021 13 7 2.8440 -6.3431 -0.0008 14 6 4.3211 -6.2775 0.0008 15 6 4.7943 -7.7634 -0.0497 16 1 5.8092 -7.9343 -0.4088 17 6 3.6329 -8.3790 -0.9097 18 6 2.4929 -7.7941 -0.0018 19 1 1.4700 -8.0402 -0.2870 20 6 2.9583 -8.2995 1.3990 21 7 4.4789 -8.2928 1.3146 22 6 5.0596 -7.4376 2.3584 23 6 6.5358 -7.2697 2.1066 24 7 7.0785 -6.3393 1.3892 25 7 8.3391 -6.3608 1.2984 26 6 8.9464 -7.3171 1.9242 27 16 7.7747 -8.2825 2.7158 28 1 -0.4851 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8895 30 1 3.1243 -3.7313 -0.8904 31 1 4.6777 -5.7977 0.9123 32 1 4.6784 -5.7366 -0.8755 33 1 3.6062 -7.9737 -1.9212 34 1 3.6475 -9.4689 -0.9065 35 1 2.6094 -7.6242 2.1802 36 1 2.5902 -9.3096 1.5783 37 1 4.5745 -6.4616 2.3398 38 1 4.9076 -7.9004 3.3335 39 1 10.0139 -7.4794 1.9432 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665371451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = 89.190026 kcal Electronic energy + Delta-G solvation = -24859.918057 eV Core-core repulsion = 21251.122577 eV Total energy + Delta-G solvation = -3608.795479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81738 -41.01929 -38.19424 -34.77799 -32.61699 -32.40973 -30.81227 -29.92636 -28.79921 -27.65643 -25.49204 -25.29937 -24.68027 -21.59778 -21.25679 -20.63526 -19.38049 -18.80480 -17.76344 -16.95126 -16.90263 -16.43672 -16.02589 -15.34016 -15.00812 -14.78570 -14.64003 -14.35456 -13.88480 -13.72192 -13.51832 -13.20296 -12.93548 -12.57516 -12.46482 -12.33631 -12.03110 -11.82211 -11.70213 -11.45698 -11.36592 -11.01855 -11.01791 -10.77440 -10.74593 -10.62982 -10.34809 -10.10176 -9.80790 -9.48002 -9.04057 -8.89968 -8.43969 -8.23286 -6.49033 -6.19840 -3.90575 0.03814 0.55630 1.00448 2.19290 2.81222 3.02375 3.25680 3.26677 3.30584 3.31244 3.58697 3.65780 4.05305 4.22250 4.23118 4.29295 4.50953 4.54096 4.74613 4.85231 4.95925 4.98720 5.12213 5.15250 5.17922 5.33499 5.45554 5.47969 5.56947 5.60251 5.67261 5.68689 5.78346 5.92258 6.08494 6.17570 6.28266 6.40818 7.61592 7.65421 8.18320 8.37433 8.52640 9.25538 10.87572 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012892 B = 0.003163 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.392500 B = 8849.968865 C =10524.349082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.552 3.448 12 O -0.515 6.515 13 N -0.631 5.631 14 C 0.071 3.929 15 C 0.053 3.947 16 H 0.124 0.876 17 C -0.132 4.132 18 C 0.114 3.886 19 H 0.129 0.871 20 C 0.025 3.975 21 N -0.505 5.505 22 C 0.113 3.887 23 C -0.009 4.009 24 N -0.254 5.254 25 N -0.254 5.254 26 C -0.054 4.054 27 S 0.193 5.807 28 H 0.269 0.731 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.927 -23.277 5.279 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.341 3.659 12 O -0.389 6.389 13 N -0.370 5.370 14 C -0.053 4.053 15 C -0.056 4.056 16 H 0.142 0.858 17 C -0.170 4.170 18 C 0.010 3.990 19 H 0.147 0.853 20 C -0.102 4.102 21 N -0.231 5.231 22 C -0.019 4.019 23 C -0.288 4.288 24 N -0.093 5.093 25 N -0.091 5.091 26 C -0.353 4.353 27 S 0.434 5.566 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 15.162 -23.566 5.173 28.495 hybrid contribution 2.059 2.312 -0.100 3.098 sum 17.221 -21.254 5.073 27.821 Atomic orbital electron populations 1.70011 1.05937 1.27544 1.46880 1.24979 0.95024 0.98987 0.94501 0.86229 0.79245 0.81210 0.78875 1.19894 1.20784 1.19922 1.22827 0.94897 0.91608 1.58994 0.90985 1.85330 1.04917 0.96346 1.96725 1.23504 1.06394 0.94971 1.04789 1.20037 0.85616 0.85385 0.74824 1.90704 1.14782 1.85081 1.48358 1.49394 1.06426 1.05420 1.75723 1.23160 0.80377 0.98175 1.03617 1.24560 0.99508 0.91992 0.89502 0.85833 1.23927 0.93409 1.01211 0.98467 1.23910 1.00031 0.80511 0.94547 0.85294 1.24451 0.85738 1.02357 0.97679 1.66490 1.09020 1.46062 1.01540 1.20930 0.84412 0.99311 0.97233 1.29135 1.03533 0.95877 1.00234 1.71545 1.02185 1.20092 1.15524 1.71493 1.00371 1.19204 1.18002 1.30529 1.07546 0.96238 1.00990 1.83771 0.97294 1.29197 1.46314 0.92144 0.89526 0.89347 0.89691 0.90773 0.89423 0.88752 0.90890 0.88416 0.89864 0.87732 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 2 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 3 Si 0.92 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.66 9.50 30.94 0.29 -15.36 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.15 5.44 36.01 0.20 -2.95 16 11 C 0.55 10.85 7.91 -10.98 -0.09 10.76 16 12 O -0.52 -11.90 16.21 5.56 0.09 -11.81 16 13 N -0.63 -9.20 2.94 -156.81 -0.46 -9.66 16 14 C 0.07 0.88 5.17 -1.68 -0.01 0.87 16 15 C 0.05 0.50 4.13 -62.31 -0.26 0.25 16 16 H 0.12 1.18 7.88 -51.93 -0.41 0.77 16 17 C -0.13 -1.18 6.82 -22.32 -0.15 -1.33 16 18 C 0.11 1.28 5.17 -62.58 -0.32 0.95 16 19 H 0.13 1.50 8.06 -51.93 -0.42 1.08 16 20 C 0.03 0.23 6.43 0.87 0.01 0.24 16 21 N -0.51 -4.42 5.53 -214.58 -1.19 -5.61 16 22 C 0.11 0.98 4.93 -4.98 -0.02 0.96 16 23 C -0.01 -0.08 5.88 -13.30 -0.08 -0.16 16 24 N -0.25 -2.99 10.20 32.58 0.33 -2.66 16 25 N -0.25 -2.86 11.66 29.44 0.34 -2.52 16 26 C -0.05 -0.38 12.39 51.75 0.64 0.26 16 27 S 0.19 1.17 23.06 -107.50 -2.48 -1.31 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 30 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 31 H 0.09 1.12 4.58 -51.93 -0.24 0.88 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.88 5.83 -51.93 -0.30 0.58 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -36.19 348.72 -9.19 -45.38 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.69 Total: -0.79 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.11 Total: -3.45 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.24 Total: -46.28 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -4.69 Total: -5.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.19 -9.19 -45.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665371451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.567 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds