Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 120.00220 * 2 1 4 4 H 1.48497 * 109.47240 * 270.00117 * 3 2 1 5 5 H 1.48505 * 109.47012 * 30.00339 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00182 * 3 2 1 7 7 C 1.38801 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99866 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00211 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99966 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99834 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00207 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.88373 * 31.11606 * 14 13 11 16 16 C 1.55128 * 111.19358 * 267.18985 * 14 13 11 17 17 N 1.47432 * 104.71928 * 279.18611 * 16 14 13 18 18 C 1.34777 * 125.64675 * 155.81483 * 17 16 14 19 19 O 1.21700 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.46656 * 119.99952 * 179.71683 * 18 17 16 21 21 C 1.36547 * 125.98456 * 179.71461 * 20 18 17 22 22 C 1.40360 * 106.70432 * 179.88670 * 21 20 18 23 23 C 1.35134 * 107.11585 * 0.38149 * 22 21 20 24 24 O 1.33926 * 108.76615 * 359.76180 * 23 22 21 25 25 C 1.47016 * 108.70427 * 335.55587 * 17 16 14 26 26 C 1.54329 * 107.27275 * 1.28309 * 25 17 16 27 27 H 1.08992 * 110.72047 * 263.65530 * 26 25 17 28 28 O 1.42897 * 110.72041 * 140.55364 * 26 25 17 29 29 H 0.97000 * 119.99344 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47141 * 60.00612 * 10 9 7 31 31 H 1.09000 * 109.47280 * 300.00239 * 10 9 7 32 32 H 0.97001 * 120.00550 * 359.97438 * 13 11 10 33 33 H 1.08997 * 110.49744 * 160.34663 * 16 14 13 34 34 H 1.08995 * 110.34259 * 37.95244 * 16 14 13 35 35 H 1.07997 * 126.64629 * 0.02881 * 21 20 18 36 36 H 1.07995 * 126.44531 * 180.16319 * 22 21 20 37 37 H 1.07998 * 125.61491 * 179.76720 * 23 22 21 38 38 H 1.09000 * 109.88449 * 120.70334 * 25 17 16 39 39 H 1.09000 * 109.88080 * 241.86991 * 25 17 16 40 40 H 0.96704 * 113.99699 * 61.45670 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0008 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4947 -0.0011 14 6 7.4907 -4.7359 -0.0016 15 1 8.0176 -3.9399 0.5247 16 6 8.0318 -4.8979 -1.4464 17 7 7.7210 -6.2929 -1.8085 18 6 7.5741 -6.7648 -3.0624 19 8 7.6984 -6.0153 -4.0131 20 6 7.2702 -8.1827 -3.2813 21 6 7.0917 -8.7873 -4.4926 22 6 6.8248 -10.1405 -4.2326 23 6 6.8433 -10.2989 -2.8907 24 8 7.1120 -9.1170 -2.3211 25 6 7.6040 -7.0851 -0.5756 26 6 7.8234 -6.1223 0.6103 27 1 8.8584 -6.1586 0.9501 28 8 6.9301 -6.4291 1.6826 29 1 -0.4849 0.8401 -0.0004 30 1 3.6434 -3.4318 -0.8907 31 1 3.6440 -3.4314 0.8893 32 1 5.4291 -5.2435 -0.0011 33 1 9.1085 -4.7303 -1.4718 34 1 7.5237 -4.2087 -2.1208 35 1 7.1476 -8.3160 -5.4627 36 1 6.6362 -10.9098 -4.9668 37 1 6.6701 -11.2259 -2.3644 38 1 6.6106 -7.5296 -0.5134 39 1 8.3635 -7.8668 -0.5639 40 1 7.0456 -7.3166 2.0490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719253869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -87.005751 kcal Electronic energy + Delta-G solvation = -26775.449271 eV Core-core repulsion = 22683.967748 eV Total energy + Delta-G solvation = -4091.481524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.10660 -40.69863 -39.17007 -38.14420 -35.99054 -34.06229 -33.46698 -32.41210 -31.27650 -30.03015 -29.15687 -28.23180 -25.59504 -24.80626 -22.56947 -22.22399 -21.59572 -20.55486 -20.10866 -18.47313 -17.90034 -17.78437 -17.14218 -16.82687 -16.61242 -16.29253 -15.74737 -15.62536 -14.97839 -14.94027 -14.67528 -13.97460 -13.85724 -13.77623 -13.47299 -13.41962 -13.35217 -13.20143 -12.99391 -12.77942 -12.72518 -12.33249 -11.94179 -11.45821 -11.23440 -10.98361 -10.86500 -10.57855 -10.50814 -10.49382 -9.83637 -9.57107 -9.38575 -9.14278 -8.97743 -8.84501 -8.47649 -6.88731 -6.26351 -3.97754 0.64888 1.92874 2.14217 2.59010 2.74204 2.80517 2.92957 3.26584 3.36056 3.52802 3.56508 3.65987 3.85387 4.02326 4.28982 4.35725 4.47453 4.54078 4.56859 4.73840 4.83191 4.99824 5.11677 5.12837 5.19689 5.23990 5.27318 5.34437 5.39948 5.52647 5.56603 5.79270 5.80193 5.88608 6.05254 6.40130 6.46618 6.93156 7.11475 7.58980 7.62734 7.96853 8.44500 8.46825 9.19866 10.82965 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.002570 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.439818 B =10892.043181 C =11482.100963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.123 4.123 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.714 5.714 14 C 0.145 3.855 15 H 0.121 0.879 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.617 3.383 19 O -0.512 6.512 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.224 4.224 23 C -0.009 4.009 24 O -0.162 6.162 25 C 0.068 3.932 26 C 0.087 3.913 27 H 0.091 0.909 28 O -0.543 6.543 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.404 0.596 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.211 0.789 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.580 -25.570 -1.386 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.394 6.394 13 N -0.367 5.367 14 C 0.038 3.962 15 H 0.139 0.861 16 C -0.030 4.030 17 N -0.341 5.341 18 C 0.406 3.594 19 O -0.389 6.389 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.243 4.243 23 C -0.079 4.079 24 O -0.058 6.058 25 C -0.055 4.055 26 C 0.027 3.973 27 H 0.109 0.891 28 O -0.347 6.347 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.238 0.762 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.227 0.773 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 19.561 -22.819 -1.754 30.106 hybrid contribution -0.996 -1.666 -0.165 1.948 sum 18.565 -24.485 -1.919 30.787 Atomic orbital electron populations 1.69942 1.05925 1.27739 1.48168 1.24717 0.94456 0.98975 0.93198 0.86729 0.81894 0.83251 0.79940 1.19206 1.19965 1.15892 1.22319 0.88289 0.97532 1.58674 0.89405 1.84758 1.09268 0.99946 1.97424 1.23259 0.93819 1.04412 1.05853 1.20305 0.90707 0.82093 0.74735 1.90699 1.58680 1.42114 1.47896 1.45582 1.05963 1.08303 1.76897 1.22082 0.83937 0.96325 0.93882 0.86121 1.22960 1.01282 0.82370 0.96420 1.48133 1.70088 1.11042 1.04858 1.16149 0.77384 0.83899 0.81963 1.90937 1.51472 1.56019 1.40437 1.21955 1.13330 0.89898 0.87545 1.22020 0.99677 0.93771 0.98412 1.21890 1.08755 0.97282 0.96331 1.24449 1.01880 0.88027 0.93562 1.84122 1.68222 1.17153 1.36278 1.22927 1.03407 0.94854 0.84361 1.23156 0.94384 0.93717 0.86085 0.89144 1.86649 1.60008 1.37976 1.50106 0.91961 0.88575 0.88330 0.76178 0.89489 0.88507 0.82128 0.82510 0.77286 0.89769 0.90314 0.76934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.95 13.97 55.49 0.78 -26.17 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.10 27.74 -169.99 -4.71 17.38 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 11 C 0.54 9.58 7.85 -10.99 -0.09 9.50 16 12 O -0.52 -11.00 15.50 5.55 0.09 -10.92 16 13 N -0.71 -9.30 4.81 -51.61 -0.25 -9.55 16 14 C 0.15 1.52 3.31 -65.66 -0.22 1.30 16 15 H 0.12 1.37 7.54 -51.93 -0.39 0.98 16 16 C 0.09 0.99 6.62 -2.41 -0.02 0.97 16 17 N -0.61 -6.11 3.32 -171.93 -0.57 -6.68 16 18 C 0.62 7.62 7.82 -12.86 -0.10 7.52 16 19 O -0.51 -8.12 17.12 5.19 0.09 -8.04 16 20 C -0.08 -0.77 6.95 -36.80 -0.26 -1.02 16 21 C -0.12 -1.09 10.62 -39.39 -0.42 -1.50 16 22 C -0.22 -1.45 10.87 -39.89 -0.43 -1.88 16 23 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 24 O -0.16 -1.26 8.28 5.03 0.04 -1.22 16 25 C 0.07 0.45 5.30 -3.06 -0.02 0.44 16 26 C 0.09 0.57 4.12 -24.89 -0.10 0.47 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 O -0.54 -3.72 12.67 -35.23 -0.45 -4.17 16 29 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.10 1.82 8.14 -51.91 -0.42 1.39 16 31 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 32 H 0.40 4.63 8.39 -40.82 -0.34 4.29 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.33 8.04 -51.93 -0.42 0.92 16 35 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.21 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.08 0.57 7.59 -51.93 -0.39 0.18 16 39 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 40 H 0.38 0.82 9.11 45.56 0.42 1.24 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -38.49 361.69 -6.46 -44.95 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.07 Total: 2.90 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.85 Total: 1.67 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.04 Total: -42.41 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.23 Total: -24.34 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.49 -6.46 -44.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719253869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.057 kcal (2) G-P(sol) polarization free energy of solvation -38.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds