Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00407 * 2 1 4 4 H 1.48500 * 109.47305 * 239.99866 * 3 2 1 5 5 H 1.48505 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47328 * 119.99603 * 3 2 1 7 7 C 1.38813 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00784 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47574 * 134.49400 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.12016 * 155.36071 * 10 9 7 12 12 O 1.42901 * 113.74139 * 269.15802 * 11 10 9 13 13 C 1.52993 * 113.74521 * 137.95080 * 11 10 9 14 14 N 1.46497 * 109.47686 * 185.00214 * 13 11 10 15 15 C 1.34771 * 120.00542 * 180.02562 * 14 13 11 16 16 O 1.21777 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.41714 * 120.00207 * 180.02562 * 15 14 13 18 18 S 1.75653 * 125.10294 * 359.97234 * 17 15 14 19 19 C 1.75561 * 91.21430 * 179.97438 * 18 17 15 20 20 C 1.34203 * 110.67785 * 359.96894 * 19 18 17 21 21 C 1.37155 * 125.10236 * 180.02562 * 17 15 14 22 22 O 1.37658 * 124.48752 * 0.33192 * 21 17 15 23 23 C 1.43315 * 114.54923 * 163.36726 * 22 21 17 24 24 C 1.53219 * 109.18983 * 46.34846 * 23 22 21 25 25 O 1.38242 * 124.14446 * 180.22240 * 20 19 18 26 26 C 1.47579 * 134.48948 * 0.02562 * 9 7 2 27 27 H 0.97001 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.09003 * 113.77270 * 41.05925 * 10 9 7 29 29 H 1.08998 * 113.87470 * 269.67319 * 10 9 7 30 30 H 0.96703 * 113.99915 * 178.07338 * 12 11 10 31 31 H 1.09001 * 109.47149 * 65.00078 * 13 11 10 32 32 H 1.09006 * 109.47263 * 305.00336 * 13 11 10 33 33 H 0.97004 * 119.99467 * 0.02562 * 14 13 11 34 34 H 1.07998 * 124.65809 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.43893 * 286.47193 * 23 22 21 36 36 H 1.08998 * 109.61711 * 166.33589 * 23 22 21 37 37 H 1.09005 * 109.52305 * 177.90129 * 24 23 22 38 38 H 1.08995 * 109.52370 * 57.70915 * 24 23 22 39 39 H 1.09001 * 113.76782 * 90.34397 * 26 9 7 40 40 H 1.09000 * 113.77452 * 318.93760 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7200 -3.8101 -0.0005 11 6 0.3468 -4.0829 0.6398 12 8 0.3631 -4.0579 2.0685 13 6 -0.3637 -5.3135 0.0728 14 7 -1.7029 -5.4170 0.6578 15 6 -2.5164 -6.4315 0.3037 16 8 -2.1382 -7.2624 -0.5022 17 6 -3.8120 -6.5313 0.8692 18 16 -4.4921 -5.4121 2.0398 19 6 -5.9905 -6.3251 2.0979 20 6 -5.9317 -7.3851 1.2770 21 6 -4.7227 -7.5168 0.5853 22 8 -4.4994 -8.5559 -0.2895 23 6 -5.4122 -9.6527 -0.1566 24 6 -6.8421 -9.1098 -0.0659 25 8 -6.9620 -8.2904 1.1037 26 6 -0.1034 -2.7573 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 2.5622 -4.0325 0.6547 29 1 1.8324 -4.2368 -0.9972 30 1 -0.5032 -4.1997 2.4742 31 1 0.2092 -6.2083 0.3163 32 1 -0.4466 -5.2186 -1.0099 33 1 -2.0040 -4.7553 1.3000 34 1 -6.8425 -6.0688 2.7101 35 1 -5.1770 -10.2127 0.7485 36 1 -5.3255 -10.3080 -1.0233 37 1 -7.5441 -9.9413 -0.0021 38 1 -7.0621 -8.5133 -0.9512 39 1 -0.5272 -2.8730 -0.9981 40 1 -0.7170 -2.1390 0.6547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724482799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -45.603104 kcal Electronic energy + Delta-G solvation = -27039.623901 eV Core-core repulsion = 22949.937730 eV Total energy + Delta-G solvation = -4089.686170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37913 -39.83136 -38.58743 -37.31930 -35.94251 -34.86237 -33.97297 -31.98560 -30.45633 -30.16116 -28.40027 -26.28645 -25.02843 -24.52435 -24.09125 -22.00347 -21.10561 -19.66418 -19.54521 -19.19455 -17.77455 -17.41428 -16.75702 -16.68862 -16.00567 -15.76776 -15.42319 -15.24827 -15.14903 -14.72987 -14.66548 -14.48107 -13.96556 -13.86206 -13.50866 -13.41930 -13.22560 -12.87884 -12.67660 -12.23697 -11.76305 -11.65423 -11.44274 -11.32804 -11.11670 -11.05073 -10.90510 -10.72118 -10.44084 -10.09300 -9.76407 -9.50528 -9.23027 -9.02243 -8.80292 -8.78004 -8.29871 -6.88423 -5.75534 -3.07244 0.11708 1.03457 1.26838 1.86598 2.86924 3.05902 3.19114 3.22833 3.41938 3.45444 3.46657 3.75720 4.15905 4.44099 4.45081 4.48527 4.53522 4.86077 4.90233 4.96370 5.05436 5.11636 5.17054 5.24397 5.30511 5.58189 5.62749 5.77828 6.06193 6.27141 6.30664 6.42208 6.54458 6.58158 6.71313 7.02907 7.18068 7.44735 7.51283 7.97496 8.12086 8.22090 9.05208 9.71578 10.57822 11.41762 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002526 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.610284 B =11080.233374 C =11707.257120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.137 3.863 11 C 0.062 3.938 12 O -0.525 6.525 13 C 0.105 3.895 14 N -0.722 5.722 15 C 0.591 3.409 16 O -0.519 6.519 17 C -0.278 4.278 18 S 0.223 5.777 19 C -0.210 4.210 20 C 0.031 3.969 21 C 0.127 3.873 22 O -0.259 6.259 23 C 0.012 3.988 24 C 0.017 3.983 25 O -0.292 6.292 26 C 0.144 3.856 27 H 0.254 0.746 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.361 0.639 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.182 0.818 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.638 -18.647 3.855 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.019 3.981 12 O -0.329 6.329 13 C -0.019 4.019 14 N -0.376 5.376 15 C 0.378 3.622 16 O -0.397 6.397 17 C -0.399 4.399 18 S 0.486 5.514 19 C -0.348 4.348 20 C -0.025 4.025 21 C 0.066 3.934 22 O -0.172 6.172 23 C -0.064 4.064 24 C -0.059 4.059 25 O -0.207 6.207 26 C 0.018 3.982 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.207 0.793 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.228 0.772 34 H 0.200 0.800 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.131 -17.494 3.848 23.447 hybrid contribution -1.069 -0.296 -0.515 1.223 sum -16.199 -17.790 3.334 24.290 Atomic orbital electron populations 1.69787 1.05011 1.25409 1.56811 1.24765 0.95713 0.97510 1.02464 0.86171 0.78454 0.83021 0.77929 1.21205 1.21579 1.21065 1.18950 0.90256 0.81730 1.43708 0.90170 1.45645 1.01955 0.99156 1.86008 1.22543 0.93306 0.86621 0.96521 1.23780 0.99270 0.93366 0.81649 1.86620 1.33478 1.95155 1.17599 1.22072 0.81299 0.99443 0.99094 1.45812 1.16658 1.28313 1.46779 1.15482 0.82904 0.81915 0.81886 1.90882 1.75039 1.40365 1.33407 1.22604 1.00291 1.05094 1.11877 1.84291 1.04689 1.24960 1.37414 1.24979 1.04568 0.98096 1.07112 1.18219 0.88124 0.94391 1.01767 1.18874 0.91148 0.90620 0.92799 1.87188 1.52501 1.25485 1.52030 1.23722 0.88657 0.88682 1.05344 1.23634 0.98123 0.95856 0.88263 1.87046 1.41614 1.47918 1.44146 1.22907 0.88947 0.89123 0.97227 0.93645 0.92627 0.93186 0.79339 0.90880 0.90039 0.77178 0.80019 0.90274 0.85581 0.85744 0.90316 0.94767 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 11.38 55.49 0.63 -26.65 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.64 3.70 -177.80 -0.66 -16.30 16 10 C 0.14 2.85 8.34 -2.98 -0.02 2.83 16 11 C 0.06 1.16 1.52 -89.70 -0.14 1.02 16 12 O -0.53 -9.69 13.51 -35.23 -0.48 -10.17 16 13 C 0.11 1.68 5.28 -4.05 -0.02 1.66 16 14 N -0.72 -10.36 5.32 -63.20 -0.34 -10.70 16 15 C 0.59 9.25 7.59 -14.93 -0.11 9.14 16 16 O -0.52 -9.85 15.86 -11.89 -0.19 -10.04 16 17 C -0.28 -3.68 6.25 -38.65 -0.24 -3.92 16 18 S 0.22 2.12 22.17 -107.50 -2.38 -0.27 16 19 C -0.21 -1.88 11.17 29.31 0.33 -1.55 16 20 C 0.03 0.34 6.55 -40.38 -0.26 0.07 16 21 C 0.13 1.63 6.58 -39.35 -0.26 1.37 16 22 O -0.26 -3.38 9.60 -49.16 -0.47 -3.85 16 23 C 0.01 0.09 7.14 37.27 0.27 0.36 16 24 C 0.02 0.11 7.14 37.27 0.27 0.38 16 25 O -0.29 -2.79 10.77 -35.40 -0.38 -3.17 16 26 C 0.14 3.32 6.92 -2.97 -0.02 3.30 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.36 5.04 7.61 45.56 0.35 5.39 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 33 H 0.39 4.91 6.24 -40.82 -0.25 4.65 16 34 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 40 H 0.08 1.98 7.15 -51.93 -0.37 1.61 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -36.95 352.06 -8.50 -45.45 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.04 Total: 5.14 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.48 Total: 7.92 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.36 Total: -53.65 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.52 Total: -27.23 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.38 Total: -0.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.95 -8.50 -45.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724482799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.152 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds