Wall clock time and date at job start Sat Apr 11 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35804 * 116.99968 * 2 1 4 4 C 1.38834 * 119.92554 * 359.72174 * 3 2 1 5 5 C 1.37797 * 120.14795 * 179.76605 * 4 3 2 6 6 C 1.39701 * 120.00142 * 0.51331 * 5 4 3 7 7 C 1.47602 * 120.06987 * 179.76812 * 6 5 4 8 8 O 1.21585 * 119.99936 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00309 * 359.97373 * 7 6 5 10 10 N 1.40101 * 119.99978 * 180.02562 * 9 7 6 11 11 C 1.34783 * 119.99771 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99722 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00091 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47473 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00436 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.38803 * 120.00337 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00138 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47310 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47268 * 119.99810 * 19 17 15 22 22 H 1.48495 * 109.47565 * 239.99856 * 19 17 15 23 23 C 1.39733 * 119.85629 * 359.74065 * 6 5 4 24 24 C 1.38142 * 119.85536 * 0.02562 * 23 6 5 25 25 O 1.35994 * 120.00545 * 179.97438 * 24 23 6 26 26 C 1.42901 * 116.99946 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47043 * 59.99833 * 1 2 3 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00235 * 1 2 3 30 30 H 1.08001 * 119.92909 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.99899 * 180.23321 * 5 4 3 32 32 H 0.96997 * 119.99801 * 359.97438 * 9 7 6 33 33 H 0.96997 * 120.00221 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.47118 * 299.99497 * 13 11 10 35 35 H 1.09004 * 109.47441 * 59.99445 * 13 11 10 36 36 H 0.97000 * 120.00298 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.07340 * 180.02562 * 23 6 5 38 38 H 1.08997 * 109.47239 * 59.99902 * 26 25 24 39 39 H 1.09007 * 109.47331 * 180.02562 * 26 25 24 40 40 H 1.09002 * 109.47314 * 300.00221 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3734 -0.0058 5 6 1.9087 3.6036 -0.0010 6 6 3.3035 3.6822 -0.0010 7 6 3.9700 4.9992 -0.0010 8 8 5.1840 5.0661 -0.0006 9 7 3.2330 6.1275 -0.0015 10 7 3.8657 7.3775 -0.0021 11 6 3.1285 8.5059 -0.0020 12 8 1.9175 8.4391 -0.0020 13 6 3.8090 9.8504 -0.0020 14 16 2.5590 11.1594 -0.0027 15 6 3.6025 12.5791 -0.0018 16 1 4.6759 12.4603 -0.0015 17 6 3.0450 13.8503 -0.0015 18 7 1.7367 13.9951 -0.0025 19 14 4.1512 15.3553 -0.0013 20 1 5.5725 14.9250 -0.0021 21 1 3.8803 16.1691 -1.2136 22 1 3.8805 16.1686 1.2113 23 6 4.0662 2.5114 -0.0005 24 6 3.4377 1.2812 -0.0005 25 8 4.1770 0.1398 -0.0005 26 6 5.5984 0.2875 0.0001 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2095 2.3141 -0.0100 31 1 1.3170 4.5070 -0.0018 32 1 2.2645 6.0741 -0.0023 33 1 4.8342 7.4309 -0.0017 34 1 4.4315 9.9426 0.8880 35 1 4.4317 9.9426 -0.8920 36 1 1.3470 14.8834 -0.0026 37 1 5.1447 2.5681 -0.0001 38 1 5.9063 0.8359 0.8903 39 1 6.0660 -0.6972 -0.0004 40 1 5.9070 0.8364 -0.8897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032661026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:51 Heat of formation + Delta-G solvation = -77.320316 kcal Electronic energy + Delta-G solvation = -25491.910974 eV Core-core repulsion = 21400.849442 eV Total energy + Delta-G solvation = -4091.061532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21440 -40.21248 -38.97111 -38.78823 -36.97260 -35.31726 -32.48770 -32.21291 -30.91394 -30.67683 -28.80758 -27.68704 -27.46897 -25.54271 -23.97174 -22.58606 -21.52324 -21.04848 -19.21315 -18.33125 -17.95259 -17.62811 -17.09149 -16.66488 -16.55467 -15.91126 -15.69981 -15.62990 -15.26905 -14.95982 -14.85288 -14.75878 -14.73054 -14.20193 -13.57282 -13.45207 -13.25530 -13.07824 -12.68448 -12.59302 -12.40035 -11.84912 -11.64232 -11.63348 -11.49881 -11.20233 -11.10066 -11.08635 -10.83188 -10.47868 -9.89095 -9.79213 -9.28974 -9.12811 -8.49750 -8.34125 -8.24001 -6.58497 -6.27835 -3.99433 0.39888 0.83980 1.70728 2.38692 2.73542 2.81977 2.85550 3.13948 3.19039 3.27374 3.37592 3.39475 3.91412 4.13978 4.24181 4.37142 4.47826 4.60589 4.67937 4.72290 4.77027 4.83504 4.86403 5.00221 5.06363 5.08072 5.15389 5.17712 5.44785 5.52961 5.67831 5.74045 5.77493 6.01846 6.03428 6.53924 6.60296 6.67846 7.05679 7.49113 7.55275 7.79923 8.29949 8.42149 9.18078 10.79619 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.001811 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.639230 B =15454.292253 C =16449.183001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.302 6.302 3 C 0.129 3.871 4 C -0.180 4.180 5 C -0.076 4.076 6 C -0.126 4.126 7 C 0.562 3.438 8 O -0.542 6.542 9 N -0.514 5.514 10 N -0.530 5.530 11 C 0.535 3.465 12 O -0.517 6.517 13 C -0.145 4.145 14 S -0.051 6.051 15 C -0.537 4.537 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.921 3.079 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.110 4.110 24 C 0.091 3.909 25 O -0.305 6.305 26 C 0.023 3.977 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.431 0.569 33 H 0.431 0.569 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.269 0.731 37 H 0.152 0.848 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -29.193 0.002 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.083 3.917 4 C -0.198 4.198 5 C -0.095 4.095 6 C -0.130 4.130 7 C 0.350 3.650 8 O -0.420 6.420 9 N -0.261 5.261 10 N -0.281 5.281 11 C 0.322 3.678 12 O -0.389 6.389 13 C -0.297 4.297 14 S 0.175 5.825 15 C -0.685 4.685 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.747 3.253 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.129 4.129 24 C 0.046 3.954 25 O -0.218 6.218 26 C -0.072 4.072 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.274 0.726 33 H 0.273 0.727 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.169 0.831 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.430 -29.509 0.001 29.512 hybrid contribution 1.979 1.396 0.003 2.422 sum 2.410 -28.113 0.003 28.216 Atomic orbital electron populations 1.23173 0.77954 1.04421 1.01698 1.86157 1.21542 1.25716 1.88068 1.18525 0.89165 0.85421 0.98633 1.21022 1.00535 0.90909 1.07372 1.21089 0.93030 0.98005 0.97379 1.19249 0.93314 0.91831 1.08637 1.18124 0.86929 0.82803 0.77186 1.90794 1.13108 1.86990 1.51068 1.44676 1.09664 0.96613 1.75143 1.45191 1.09555 0.95012 1.78372 1.20715 0.87852 0.83890 0.75340 1.90721 1.13542 1.86454 1.48195 1.23487 1.05762 0.94623 1.05848 1.85421 1.06387 0.93941 1.96785 1.22913 0.94666 0.91807 1.59129 0.90627 1.25001 0.95489 0.98675 0.94402 1.70017 1.09736 1.23728 1.46768 0.86085 0.80081 0.81225 0.77926 1.19541 1.20539 1.20534 1.21098 1.01259 0.89392 1.01197 1.18035 0.88281 0.86068 1.03062 1.86181 1.19067 1.27515 1.89070 1.23150 0.78139 1.04157 1.01782 0.92251 0.87893 0.92256 0.83690 0.84658 0.72598 0.72694 0.88391 0.88393 0.92148 0.83074 0.92327 0.87919 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.72 10.27 -33.79 -0.35 -3.06 16 3 C 0.13 1.22 6.71 -38.93 -0.26 0.96 16 4 C -0.18 -1.39 9.01 -39.52 -0.36 -1.74 16 5 C -0.08 -0.65 9.53 -39.20 -0.37 -1.02 16 6 C -0.13 -1.32 5.87 -104.97 -0.62 -1.93 16 7 C 0.56 7.15 7.88 -12.44 -0.10 7.05 16 8 O -0.54 -8.20 16.18 5.29 0.09 -8.11 16 9 N -0.51 -6.63 6.21 30.47 0.19 -6.44 16 10 N -0.53 -7.62 6.26 31.22 0.20 -7.42 16 11 C 0.54 9.52 7.96 -10.99 -0.09 9.43 16 12 O -0.52 -10.75 15.70 5.55 0.09 -10.66 16 13 C -0.15 -2.78 6.16 36.00 0.22 -2.56 16 14 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 15 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 16 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 19 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C -0.11 -1.11 8.58 -39.06 -0.33 -1.44 16 24 C 0.09 0.92 6.69 -39.19 -0.26 0.66 16 25 O -0.30 -3.01 10.28 -34.38 -0.35 -3.36 16 26 C 0.02 0.14 9.81 101.05 0.99 1.13 16 27 H 0.06 0.21 7.64 -51.93 -0.40 -0.18 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 30 H 0.15 0.73 6.27 -52.49 -0.33 0.40 16 31 H 0.14 0.93 6.39 -52.49 -0.34 0.59 16 32 H 0.43 5.03 6.02 -182.60 -1.10 3.93 16 33 H 0.43 5.54 8.00 -182.60 -1.46 4.08 16 34 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 35 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.15 1.43 5.87 -52.49 -0.31 1.12 16 38 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -36.16 364.42 -7.50 -43.65 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.36 Total: 3.27 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 0.01 Total: -0.98 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.12 Total: -38.69 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.53 Total: -25.20 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.16 -7.50 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032661026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.666 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds