Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35804 * 116.99968 * 2 1 4 4 C 1.38834 * 119.92554 * 359.72174 * 3 2 1 5 5 C 1.37797 * 120.14795 * 179.76605 * 4 3 2 6 6 C 1.39701 * 120.00142 * 0.51331 * 5 4 3 7 7 C 1.47602 * 120.06987 * 179.76812 * 6 5 4 8 8 O 1.21585 * 119.99936 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00309 * 359.97373 * 7 6 5 10 10 N 1.40101 * 119.99978 * 180.02562 * 9 7 6 11 11 C 1.34783 * 119.99771 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99722 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00091 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47473 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00436 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.38803 * 120.00337 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00138 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47310 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47268 * 119.99810 * 19 17 15 22 22 H 1.48495 * 109.47565 * 239.99856 * 19 17 15 23 23 C 1.39733 * 119.85629 * 359.74065 * 6 5 4 24 24 C 1.38142 * 119.85536 * 0.02562 * 23 6 5 25 25 O 1.35994 * 120.00545 * 179.97438 * 24 23 6 26 26 C 1.42901 * 116.99946 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47043 * 59.99833 * 1 2 3 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00235 * 1 2 3 30 30 H 1.08001 * 119.92909 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.99899 * 180.23321 * 5 4 3 32 32 H 0.96997 * 119.99801 * 359.97438 * 9 7 6 33 33 H 0.96997 * 120.00221 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.47118 * 299.99497 * 13 11 10 35 35 H 1.09004 * 109.47441 * 59.99445 * 13 11 10 36 36 H 0.97000 * 120.00298 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.07340 * 180.02562 * 23 6 5 38 38 H 1.08997 * 109.47239 * 59.99902 * 26 25 24 39 39 H 1.09007 * 109.47331 * 180.02562 * 26 25 24 40 40 H 1.09002 * 109.47314 * 300.00221 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3734 -0.0058 5 6 1.9087 3.6036 -0.0010 6 6 3.3035 3.6822 -0.0010 7 6 3.9700 4.9992 -0.0010 8 8 5.1840 5.0661 -0.0006 9 7 3.2330 6.1275 -0.0015 10 7 3.8657 7.3775 -0.0021 11 6 3.1285 8.5059 -0.0020 12 8 1.9175 8.4391 -0.0020 13 6 3.8090 9.8504 -0.0020 14 16 2.5590 11.1594 -0.0027 15 6 3.6025 12.5791 -0.0018 16 1 4.6759 12.4603 -0.0015 17 6 3.0450 13.8503 -0.0015 18 7 1.7367 13.9951 -0.0025 19 14 4.1512 15.3553 -0.0013 20 1 5.5725 14.9250 -0.0021 21 1 3.8803 16.1691 -1.2136 22 1 3.8805 16.1686 1.2113 23 6 4.0662 2.5114 -0.0005 24 6 3.4377 1.2812 -0.0005 25 8 4.1770 0.1398 -0.0005 26 6 5.5984 0.2875 0.0001 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2095 2.3141 -0.0100 31 1 1.3170 4.5070 -0.0018 32 1 2.2645 6.0741 -0.0023 33 1 4.8342 7.4309 -0.0017 34 1 4.4315 9.9426 0.8880 35 1 4.4317 9.9426 -0.8920 36 1 1.3470 14.8834 -0.0026 37 1 5.1447 2.5681 -0.0001 38 1 5.9063 0.8359 0.8903 39 1 6.0660 -0.6972 -0.0004 40 1 5.9070 0.8364 -0.8897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032661026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = -103.797821 kcal Electronic energy + Delta-G solvation = -25493.059125 eV Core-core repulsion = 21400.849442 eV Total energy + Delta-G solvation = -4092.209683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99937 -41.26626 -40.09162 -39.52369 -37.71500 -36.54491 -34.58029 -33.38503 -31.67133 -31.49355 -30.02780 -28.19090 -28.12336 -27.63013 -24.79431 -23.26644 -22.72039 -22.05787 -20.18386 -19.64933 -19.16747 -18.80523 -17.91485 -17.58147 -17.17534 -17.04673 -16.89552 -16.87214 -16.20787 -16.19015 -15.96421 -15.89826 -15.63319 -15.50241 -14.94494 -14.54460 -14.17231 -13.90359 -13.90179 -13.60454 -13.15926 -13.09504 -12.91737 -12.63143 -12.54509 -12.43107 -12.17906 -12.13622 -12.06867 -11.76645 -11.56179 -11.23222 -11.15313 -10.30063 -9.98062 -9.60958 -9.00668 -8.66010 -8.35007 -6.12265 -0.37823 0.16869 0.50630 1.26754 1.35028 1.42508 1.52409 1.64755 1.66651 2.19489 2.24095 2.26291 2.61678 2.79836 2.99968 3.22511 3.45607 3.63218 3.83313 3.89257 3.96933 4.06744 4.24995 4.32406 4.36706 4.40751 4.44009 4.48972 4.54485 4.70675 4.78221 4.79042 5.01038 5.07410 5.36649 5.39998 5.44296 5.61220 5.97515 6.20966 6.32974 6.44359 6.67554 7.07433 7.16708 8.74188 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.001811 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.639230 B =15454.292253 C =16449.183001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.125 3.875 4 C -0.173 4.173 5 C -0.070 4.070 6 C -0.142 4.142 7 C 0.567 3.433 8 O -0.568 6.568 9 N -0.512 5.512 10 N -0.515 5.515 11 C 0.542 3.458 12 O -0.551 6.551 13 C -0.124 4.124 14 S -0.133 6.133 15 C -0.547 4.547 16 H 0.085 0.915 17 C 0.015 3.985 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.113 4.113 24 C 0.076 3.924 25 O -0.323 6.323 26 C 0.016 3.984 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.437 0.563 33 H 0.440 0.560 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.271 0.729 37 H 0.151 0.849 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -30.027 0.002 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.078 3.922 4 C -0.192 4.192 5 C -0.089 4.089 6 C -0.147 4.147 7 C 0.357 3.643 8 O -0.447 6.447 9 N -0.260 5.260 10 N -0.265 5.265 11 C 0.329 3.671 12 O -0.426 6.426 13 C -0.277 4.277 14 S 0.094 5.906 15 C -0.695 4.695 16 H 0.103 0.897 17 C -0.190 4.190 18 N -0.546 5.546 19 Si 0.819 3.181 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.133 4.133 24 C 0.031 3.969 25 O -0.237 6.237 26 C -0.078 4.078 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.193 0.807 31 H 0.170 0.830 32 H 0.281 0.719 33 H 0.284 0.716 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.119 -30.382 0.000 30.403 hybrid contribution 1.764 1.410 0.003 2.258 sum 2.883 -28.972 0.003 29.115 Atomic orbital electron populations 1.23495 0.75795 1.06022 1.02916 1.86138 1.23850 1.25687 1.87810 1.18784 0.89228 0.86214 0.97939 1.21318 1.01916 0.89867 1.06081 1.21300 0.92281 0.99118 0.96172 1.19138 0.94197 0.90503 1.10887 1.18472 0.86603 0.83195 0.76036 1.90776 1.14301 1.87349 1.52320 1.44788 1.10043 0.95736 1.75413 1.44817 1.09791 0.95210 1.76702 1.20300 0.87244 0.84250 0.75336 1.90714 1.14887 1.86866 1.50159 1.23286 1.03656 0.92861 1.07864 1.85524 1.10862 0.97108 1.97083 1.23263 0.95104 0.92380 1.58775 0.89695 1.26081 0.96981 1.02178 0.93778 1.70166 1.11844 1.24602 1.48016 0.84924 0.78397 0.76751 0.78008 1.18114 1.20037 1.20023 1.21098 1.01341 0.89457 1.01356 1.18220 0.88968 0.86079 1.03676 1.86155 1.20613 1.27741 1.89165 1.23372 0.76696 1.05639 1.02112 0.90967 0.86309 0.90982 0.80745 0.82986 0.71858 0.71588 0.86305 0.86307 0.91959 0.83150 0.91992 0.85841 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.33 10.27 -77.34 -0.79 -6.12 16 3 C 0.13 2.20 6.71 22.69 0.15 2.35 16 4 C -0.17 -2.30 9.01 22.31 0.20 -2.10 16 5 C -0.07 -1.07 9.53 22.52 0.21 -0.85 16 6 C -0.14 -2.86 5.87 -20.09 -0.12 -2.98 16 7 C 0.57 13.93 7.88 86.72 0.68 14.61 16 8 O -0.57 -16.82 16.18 -3.99 -0.06 -16.88 16 9 N -0.51 -12.58 6.21 -175.77 -1.09 -13.68 16 10 N -0.51 -14.10 6.26 -173.53 -1.09 -15.18 16 11 C 0.54 18.77 7.96 87.65 0.70 19.47 16 12 O -0.55 -22.84 15.70 -3.05 -0.05 -22.88 16 13 C -0.12 -4.62 6.16 71.23 0.44 -4.18 16 14 S -0.13 -6.98 20.57 -56.49 -1.16 -8.15 16 15 C -0.55 -30.21 9.50 67.96 0.65 -29.56 16 16 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 17 C 0.01 0.82 5.49 84.86 0.47 1.29 16 18 N -0.91 -54.41 13.22 21.65 0.29 -54.13 16 19 Si 1.00 42.74 29.55 68.60 2.03 44.77 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.11 -2.23 8.58 22.61 0.19 -2.04 16 24 C 0.08 1.50 6.69 22.53 0.15 1.65 16 25 O -0.32 -6.26 10.28 -79.47 -0.82 -7.08 16 26 C 0.02 0.19 9.81 113.37 1.11 1.31 16 27 H 0.07 0.33 7.64 -2.39 -0.02 0.31 16 28 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 30 H 0.18 1.19 6.27 -2.91 -0.02 1.17 16 31 H 0.15 1.76 6.39 -2.91 -0.02 1.74 16 32 H 0.44 9.65 6.02 -213.32 -1.28 8.37 16 33 H 0.44 10.57 8.00 -213.32 -1.71 8.86 16 34 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.15 2.87 5.87 -2.91 -0.02 2.86 16 38 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 39 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 Total: -1.00 -79.01 364.42 1.33 -77.68 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -1.87 Total: 21.49 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.95 Total: 0.16 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.89 Total: -82.98 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.72 Total: -52.97 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.16 Total: -8.15 kcal Total: -79.01 1.33 -77.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032661026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.118 kcal (2) G-P(sol) polarization free energy of solvation -79.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds