Wall clock time and date at job start Sat Apr 11 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00111 * 2 1 4 4 C 1.50707 * 109.46883 * 270.00145 * 3 2 1 5 5 O 1.20821 * 120.00112 * 0.02562 * 4 3 2 6 6 O 1.34225 * 119.99740 * 179.97438 * 4 3 2 7 7 C 1.45204 * 116.99937 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.46917 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00161 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99544 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99573 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.46907 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99938 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00273 * 179.97438 * 12 11 10 15 15 N 1.31524 * 119.99698 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00435 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47280 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99700 * 16 14 12 19 19 H 1.48498 * 109.47356 * 240.00214 * 16 14 12 20 20 C 1.34777 * 120.00268 * 180.02562 * 2 1 3 21 21 O 1.21692 * 120.00263 * 180.13942 * 20 2 1 22 22 C 1.46581 * 119.99717 * 0.13477 * 20 2 1 23 23 C 1.36644 * 125.45849 * 171.40483 * 22 20 2 24 24 C 1.37475 * 113.29760 * 179.97438 * 23 22 20 25 25 C 1.33809 * 115.10140 * 359.97438 * 24 23 22 26 26 S 1.70613 * 110.95587 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47303 * 263.46203 * 1 2 3 28 28 H 1.09009 * 109.47218 * 23.46208 * 1 2 3 29 29 H 1.09000 * 109.47333 * 143.46451 * 1 2 3 30 30 H 1.08999 * 109.46928 * 29.99749 * 3 2 1 31 31 H 1.08997 * 109.47568 * 150.00009 * 3 2 1 32 32 H 1.08994 * 109.47051 * 299.99582 * 7 6 4 33 33 H 1.08998 * 109.46969 * 59.99880 * 7 6 4 34 34 H 0.96997 * 120.00136 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.46563 * 299.99160 * 11 10 8 36 36 H 1.08992 * 109.47855 * 59.99441 * 11 10 8 37 37 H 0.97002 * 119.99633 * 180.02562 * 15 14 12 38 38 H 1.07999 * 123.35567 * 0.24617 * 23 22 20 39 39 H 1.08002 * 122.44894 * 180.02562 * 24 23 22 40 40 H 1.08008 * 124.52107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0556 1.0240 -2.3392 6 8 3.1080 2.8469 -1.6662 7 6 3.3144 3.2031 -3.0586 8 6 4.0657 4.5071 -3.1374 9 8 4.3953 5.0796 -2.1203 10 7 4.3714 5.0371 -4.3383 11 6 5.1023 6.3044 -4.4150 12 6 5.3163 6.6742 -5.8602 13 1 4.9455 6.0295 -6.6432 14 6 5.9857 7.8356 -6.1828 15 7 6.4369 8.6211 -5.2292 16 14 6.2516 8.2937 -7.9741 17 1 5.6518 7.2517 -8.8458 18 1 5.6062 9.6020 -8.2516 19 1 7.7076 8.3917 -8.2490 20 6 2.1389 -1.1672 -0.0005 21 8 3.3558 -1.1672 0.0020 22 6 1.4060 -2.4366 -0.0041 23 6 1.9631 -3.6731 -0.1713 24 6 1.0431 -4.6939 -0.1310 25 6 -0.2237 -4.3090 0.0629 26 16 -0.3305 -2.6125 0.2087 27 1 -0.3634 -0.1170 1.0210 28 1 -0.3634 0.9428 -0.4092 29 1 -0.3634 -0.8257 -0.6118 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.8909 2.4208 -3.5522 33 1 2.3490 3.3099 -3.5532 34 1 4.1082 4.5790 -5.1518 35 1 4.5258 7.0866 -3.9210 36 1 6.0678 6.1976 -3.9208 37 1 6.9075 9.4384 -5.4562 38 1 3.0213 -3.8330 -0.3161 39 1 1.3226 -5.7307 -0.2465 40 1 -1.0660 -4.9826 0.1204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047784374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:53 Heat of formation + Delta-G solvation = -106.049459 kcal Electronic energy + Delta-G solvation = -25701.973013 eV Core-core repulsion = 21609.665692 eV Total energy + Delta-G solvation = -4092.307321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97910 -39.98195 -38.70923 -37.91956 -36.54042 -35.80063 -34.25706 -32.42057 -31.26251 -29.65093 -28.64682 -27.29477 -26.55452 -24.93141 -22.79905 -22.05748 -20.67886 -19.94730 -19.53366 -18.57156 -18.10188 -17.57997 -16.82438 -16.75911 -16.38028 -16.13335 -15.79698 -15.47469 -15.25237 -14.89631 -14.70088 -14.15760 -13.96339 -13.64447 -13.61740 -13.28301 -13.21510 -13.05975 -12.97651 -12.57210 -12.46454 -12.28020 -12.00954 -11.76697 -11.05660 -10.99919 -10.95124 -10.84988 -10.72667 -10.50756 -10.35347 -9.51806 -9.43039 -9.26375 -9.16333 -8.89482 -8.79441 -7.99810 -6.20408 -4.27746 0.08890 1.04115 1.48115 1.87685 2.03897 2.07949 2.63949 2.86381 3.16577 3.22025 3.29269 3.32314 3.94249 4.01776 4.32016 4.41241 4.56847 4.65157 4.68456 4.81875 4.87786 5.04528 5.07648 5.09575 5.12226 5.15821 5.22662 5.33075 5.51568 5.67547 5.77938 5.91078 6.27576 6.69509 7.21690 7.29645 7.45055 7.53258 7.60525 7.66412 7.91129 8.48929 8.70353 8.95334 9.38717 10.89758 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.001699 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.911255 B =16476.706900 C =16700.182533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.600 5.600 3 C 0.128 3.872 4 C 0.443 3.557 5 O -0.503 6.503 6 O -0.327 6.327 7 C 0.050 3.950 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.597 3.403 21 O -0.519 6.519 22 C -0.270 4.270 23 C -0.049 4.049 24 C -0.151 4.151 25 C -0.255 4.255 26 S 0.226 5.774 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.083 -25.049 12.789 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.333 5.333 3 C 0.004 3.996 4 C 0.284 3.716 5 O -0.390 6.390 6 O -0.241 6.241 7 C -0.028 4.028 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.130 3.870 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.386 3.614 21 O -0.396 6.396 22 C -0.390 4.390 23 C -0.083 4.083 24 C -0.182 4.182 25 C -0.392 4.392 26 S 0.495 5.505 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.400 -23.645 13.496 32.860 hybrid contribution 1.040 -1.150 -1.939 2.482 sum -17.361 -24.795 11.557 32.400 Atomic orbital electron populations 1.22129 0.78796 1.04287 1.02896 1.47272 1.07135 1.04858 1.74070 1.20924 1.01720 0.86077 0.90901 1.24308 0.74967 0.78929 0.93412 1.90672 1.48261 1.53672 1.46430 1.86547 1.68680 1.39277 1.29604 1.22873 1.02152 0.97462 0.80281 1.19875 0.81087 0.85644 0.85121 1.90709 1.53741 1.62089 1.34583 1.46367 1.57068 1.26197 1.06025 1.19188 0.91630 0.78659 0.97482 1.21249 1.38221 1.07618 0.91246 0.91710 1.24957 0.95025 0.95884 0.98154 1.69988 1.36942 1.13053 1.32177 0.86330 0.78031 0.78461 0.83903 1.19621 1.20770 1.20753 1.17009 0.86643 0.82095 0.75660 1.90869 1.12657 1.86657 1.49384 1.24442 0.97799 0.97463 1.19342 1.20816 1.01679 0.89879 0.95916 1.20030 0.91877 1.00980 1.05266 1.25921 1.01950 1.03771 1.07584 1.83495 1.02769 0.98030 1.66226 0.90687 0.88723 0.90177 0.85206 0.84851 0.88524 0.88548 0.77428 0.95215 0.95215 0.92422 0.82887 0.84017 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 8.92 59.85 0.53 0.89 16 2 N -0.60 -5.65 2.36 -184.54 -0.44 -6.08 16 3 C 0.13 1.21 5.97 -5.19 -0.03 1.18 16 4 C 0.44 5.93 8.02 36.01 0.29 6.22 16 5 O -0.50 -7.76 16.18 -18.75 -0.30 -8.06 16 6 O -0.33 -5.09 9.75 -45.89 -0.45 -5.53 16 7 C 0.05 0.77 5.94 36.01 0.21 0.98 16 8 C 0.50 10.06 7.91 -10.98 -0.09 9.97 16 9 O -0.53 -13.03 16.50 -14.10 -0.23 -13.27 16 10 N -0.71 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 12 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.60 7.08 7.64 -12.90 -0.10 6.98 16 21 O -0.52 -7.97 16.43 5.20 0.09 -7.89 16 22 C -0.27 -2.58 6.23 -36.79 -0.23 -2.81 16 23 C -0.05 -0.44 10.02 -40.44 -0.41 -0.84 16 24 C -0.15 -1.03 10.15 -41.41 -0.42 -1.45 16 25 C -0.26 -1.47 10.92 29.18 0.32 -1.15 16 26 S 0.23 1.32 17.90 -107.50 -1.92 -0.61 16 27 H 0.07 0.25 7.77 -51.93 -0.40 -0.16 16 28 H 0.09 0.43 8.02 -51.92 -0.42 0.01 16 29 H 0.08 0.47 4.61 -23.25 -0.11 0.36 16 30 H 0.13 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.13 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 33 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -37.38 367.56 -7.27 -44.64 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.56 Total: 2.47 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -0.36 Total: 13.21 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.04 Total: -46.20 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.90 Total: -34.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.92 Total: -0.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.38 -7.27 -44.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047784374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.405 kcal (2) G-P(sol) polarization free energy of solvation -37.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds