Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36063 * 117.00388 * 2 1 4 4 C 1.38562 * 119.99744 * 0.02562 * 3 2 1 5 5 C 1.38183 * 120.06591 * 179.97438 * 4 3 2 6 6 C 1.38843 * 120.07413 * 0.02562 * 5 4 3 7 7 N 1.40099 * 119.99636 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00151 * 33.33806 * 7 6 5 9 9 O 1.21295 * 119.99727 * 5.27434 * 8 7 6 10 10 C 1.50695 * 120.00206 * 185.27638 * 8 7 6 11 11 S 1.80996 * 109.47184 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00245 * 179.97438 * 11 10 8 13 13 H 1.07994 * 119.99935 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99863 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00472 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47349 * 59.99331 * 16 14 12 18 18 H 1.48501 * 109.47459 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47301 * 299.99751 * 16 14 12 20 20 C 1.38817 * 120.00803 * 359.74703 * 6 5 4 21 21 C 1.38497 * 119.92910 * 0.50361 * 20 6 5 22 22 O 1.35995 * 120.03540 * 179.77157 * 21 20 6 23 23 C 1.42892 * 117.00024 * 359.72502 * 22 21 20 24 24 C 1.50701 * 109.47202 * 180.02562 * 23 22 21 25 25 N 1.34773 * 120.00054 * 180.02562 * 24 23 22 26 26 O 1.21277 * 119.99851 * 359.72014 * 24 23 22 27 27 H 1.09000 * 109.46988 * 60.00286 * 1 2 3 28 28 H 1.09002 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47285 * 299.99923 * 1 2 3 30 30 H 1.07996 * 119.96447 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.96199 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00303 * 213.33708 * 7 6 5 33 33 H 1.09001 * 109.46974 * 299.99352 * 10 8 7 34 34 H 1.08995 * 109.47600 * 59.99680 * 10 8 7 35 35 H 0.97000 * 120.00515 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.03111 * 180.25141 * 20 6 5 37 37 H 1.08997 * 109.47577 * 59.99837 * 23 22 21 38 38 H 1.08998 * 109.47237 * 299.99935 * 23 22 21 39 39 H 0.96999 * 119.99965 * 359.97438 * 25 24 23 40 40 H 0.96999 * 119.99669 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2921 2.3744 0.0005 5 6 1.9181 3.6063 0.0011 6 6 3.3044 3.6823 0.0005 7 7 3.9374 4.9322 0.0005 8 6 3.3721 5.9739 0.6425 9 8 2.3662 5.8077 1.2996 10 6 3.9898 7.3448 0.5437 11 16 3.0065 8.5204 1.5066 12 6 3.9284 9.9950 1.2231 13 1 4.8134 9.9680 0.6048 14 6 3.5177 11.1910 1.7953 15 7 2.4393 11.2238 2.5494 16 14 4.4946 12.7544 1.4942 17 1 4.5266 13.0455 0.0383 18 1 3.8521 13.8854 2.2107 19 1 5.8816 12.5754 1.9937 20 6 4.0635 2.5201 0.0048 21 6 3.4364 1.2852 -0.0010 22 8 4.1779 0.1452 -0.0016 23 6 5.5989 0.2956 -0.0021 24 6 6.2480 -1.0645 -0.0033 25 7 7.5916 -1.1699 -0.0035 26 8 5.5613 -2.0641 0.0014 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2137 2.3172 0.0014 31 1 1.3283 4.5110 0.0019 32 1 4.7824 5.0480 -0.4614 33 1 5.0065 7.3144 0.9357 34 1 4.0120 7.6592 -0.4996 35 1 2.1521 12.0597 2.9490 36 1 5.1419 2.5788 0.0085 37 1 5.9065 0.8446 0.8878 38 1 5.9058 0.8450 -0.8921 39 1 8.1408 -0.3704 -0.0032 40 1 8.0093 -2.0453 -0.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048386365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = -111.012734 kcal Electronic energy + Delta-G solvation = -25802.710816 eV Core-core repulsion = 21710.188272 eV Total energy + Delta-G solvation = -4092.522545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00895 -39.99763 -39.44416 -38.32896 -36.84986 -34.19384 -34.14288 -32.49481 -30.62026 -30.39379 -29.02739 -28.10392 -26.81706 -25.53870 -23.05642 -22.60508 -21.09310 -20.47286 -18.92820 -18.24235 -18.01126 -17.64319 -16.91980 -16.81565 -16.74814 -16.03814 -15.97217 -15.71714 -15.15084 -14.86295 -14.74559 -14.56806 -14.46833 -14.16562 -13.70037 -13.46414 -13.08537 -12.83019 -12.73457 -12.53074 -12.19974 -11.97740 -11.52402 -11.40127 -11.19984 -11.10996 -11.08566 -10.83335 -10.37493 -10.20475 -9.90824 -9.86364 -9.51689 -9.12108 -8.76019 -8.34298 -7.59096 -6.58783 -6.27988 -3.99875 1.09536 1.30299 2.12971 2.32985 2.83464 2.84630 3.17438 3.19091 3.23292 3.25714 3.44755 3.54686 3.65871 4.13621 4.29476 4.52403 4.60831 4.62076 4.86082 4.92135 5.02271 5.06038 5.07379 5.12493 5.19212 5.34171 5.38428 5.49276 5.67785 5.74250 6.00299 6.19244 6.21528 6.24820 6.33574 6.66155 6.77387 6.87293 7.40838 7.44892 7.53021 7.76064 8.28273 8.34451 9.17243 10.79318 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002161 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.248873 B =12954.376763 C =14491.433463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.084 3.916 4 C -0.148 4.148 5 C -0.114 4.114 6 C 0.163 3.837 7 N -0.679 5.679 8 C 0.531 3.469 9 O -0.494 6.494 10 C -0.154 4.154 11 S -0.056 6.056 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.274 1.274 20 C -0.205 4.205 21 C 0.114 3.886 22 O -0.278 6.278 23 C 0.037 3.963 24 C 0.520 3.480 25 N -0.852 5.852 26 O -0.515 6.515 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.409 0.591 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -21.870 -8.253 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.038 3.962 4 C -0.168 4.168 5 C -0.134 4.134 6 C 0.068 3.932 7 N -0.326 5.326 8 C 0.319 3.681 9 O -0.366 6.366 10 C -0.304 4.304 11 S 0.170 5.830 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.226 4.226 21 C 0.068 3.932 22 O -0.190 6.190 23 C -0.042 4.042 24 C 0.303 3.697 25 N -0.419 5.419 26 O -0.389 6.389 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.244 0.756 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.232 0.768 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.248 -22.883 -7.032 24.508 hybrid contribution 2.719 1.741 -1.125 3.419 sum 7.967 -21.143 -8.156 24.021 Atomic orbital electron populations 1.23061 0.78714 1.03836 1.01301 1.86202 1.20856 1.25646 1.89261 1.18146 0.88809 0.85372 1.03911 1.20978 1.00135 0.90737 1.04925 1.20997 0.93076 0.98373 1.00966 1.17355 0.91668 0.84370 0.99815 1.43674 1.26071 1.07944 1.54935 1.20542 0.84385 0.85530 0.77674 1.90728 1.24055 1.84056 1.37751 1.23542 1.05061 0.95249 1.06587 1.85433 1.35300 0.99590 1.62656 1.22807 1.14579 0.94162 1.37051 0.90884 1.24994 0.95293 0.98811 0.94436 1.69995 1.22427 1.27608 1.30154 0.86213 0.79705 0.80947 0.78571 1.19904 1.20780 1.19914 1.20658 0.99909 0.90080 1.11979 1.17804 0.88052 0.84905 1.02391 1.86256 1.15693 1.27764 1.89315 1.22434 0.81874 0.95874 1.04038 1.20073 0.82760 0.90729 0.76121 1.43658 1.06527 1.12895 1.78811 1.90824 1.62621 1.38401 1.47052 0.92739 0.88352 0.92627 0.84256 0.83787 0.75557 0.88876 0.88718 0.92035 0.84567 0.88760 0.88865 0.76836 0.76020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.04 10.28 -34.54 -0.36 -4.39 16 3 C 0.08 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.15 -1.86 9.03 -39.48 -0.36 -2.21 16 5 C -0.11 -1.61 8.65 -39.38 -0.34 -1.95 16 6 C 0.16 2.13 6.28 -83.64 -0.53 1.61 16 7 N -0.68 -8.59 5.35 -9.84 -0.05 -8.65 16 8 C 0.53 9.18 7.59 -10.99 -0.08 9.10 16 9 O -0.49 -10.41 13.55 5.54 0.08 -10.34 16 10 C -0.15 -2.85 6.16 36.00 0.22 -2.63 16 11 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 12 C -0.54 -14.76 9.50 30.94 0.29 -14.47 16 13 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 16 Si 0.92 20.80 29.55 -169.99 -5.02 15.77 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.20 -2.23 8.95 -39.27 -0.35 -2.58 16 21 C 0.11 1.45 6.70 -39.15 -0.26 1.19 16 22 O -0.28 -3.53 9.45 -47.38 -0.45 -3.98 16 23 C 0.04 0.28 5.22 36.01 0.19 0.47 16 24 C 0.52 4.59 8.18 -10.99 -0.09 4.50 16 25 N -0.85 -3.33 8.87 31.22 0.28 -3.06 16 26 O -0.52 -7.39 17.34 -14.35 -0.25 -7.63 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.14 1.42 6.29 -52.49 -0.33 1.09 16 31 H 0.14 2.28 6.41 -52.49 -0.34 1.94 16 32 H 0.41 3.60 8.82 -40.82 -0.36 3.24 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 37 H 0.09 0.52 7.65 -51.93 -0.40 0.12 16 38 H 0.09 0.44 7.67 -51.93 -0.40 0.05 16 39 H 0.40 0.21 8.83 -40.82 -0.36 -0.15 16 40 H 0.41 1.29 8.93 -40.82 -0.36 0.93 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -39.41 364.50 -6.92 -46.33 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.48 Total: 1.86 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.67 Total: -2.96 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.96 Total: -36.48 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.98 Total: -26.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.41 -6.92 -46.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048386365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.687 kcal (2) G-P(sol) polarization free energy of solvation -39.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds