Wall clock time and date at job start Sat Apr 11 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.53000 * 109.46915 * 269.99870 * 3 2 1 5 5 O 1.45207 * 109.47058 * 64.99546 * 4 3 2 6 6 C 1.34231 * 116.99764 * 179.97438 * 5 4 3 7 7 O 1.20828 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99873 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47146 * 180.02562 * 8 6 5 10 10 C 1.76200 * 99.99872 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00001 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99799 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00098 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46863 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47350 * 119.99805 * 14 12 10 17 17 H 1.48495 * 109.46682 * 240.00242 * 14 12 10 18 18 C 1.39685 * 119.99828 * 179.97438 * 2 1 3 19 19 C 1.38901 * 120.07549 * 0.02562 * 18 2 1 20 20 C 1.38110 * 119.92652 * 179.97438 * 19 18 2 21 21 C 1.38288 * 120.07099 * 0.02562 * 20 19 18 22 22 N 1.48006 * 119.92324 * 179.97438 * 21 20 19 23 23 O 1.21793 * 119.99877 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99945 * 179.97438 * 22 21 20 25 25 C 1.38283 * 120.14964 * 0.25518 * 21 20 19 26 26 C 1.38104 * 120.07445 * 359.44998 * 25 21 20 27 27 H 1.09003 * 109.47269 * 269.99798 * 1 2 3 28 28 H 1.08994 * 109.47173 * 30.00617 * 1 2 3 29 29 H 1.09010 * 109.46989 * 150.00302 * 1 2 3 30 30 H 1.09005 * 109.47076 * 29.99633 * 3 2 1 31 31 H 1.08994 * 109.47209 * 150.00008 * 3 2 1 32 32 H 1.08997 * 109.47103 * 184.99816 * 4 3 2 33 33 H 1.09000 * 109.47581 * 305.00100 * 4 3 2 34 34 H 1.09001 * 109.47038 * 300.00517 * 8 6 5 35 35 H 1.08994 * 109.46913 * 60.00263 * 8 6 5 36 36 H 0.96999 * 119.99836 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.04370 * 359.95628 * 19 18 2 38 38 H 1.07991 * 119.96480 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.96071 * 179.71716 * 25 21 20 40 40 H 1.07999 * 120.04043 * 180.25516 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.1859 1.9979 -2.0918 6 6 1.2347 2.4015 -3.3710 7 8 2.3004 2.5104 -3.9300 8 6 -0.0397 2.7188 -4.1102 9 16 0.3547 3.2301 -5.8010 10 6 -1.2688 3.5300 -6.4166 11 1 -2.1252 3.3821 -5.7755 12 6 -1.4468 3.9574 -7.7251 13 7 -0.4030 4.1382 -8.5062 14 14 -3.1680 4.2760 -8.3775 15 1 -4.1615 3.9999 -7.3088 16 1 -3.2809 5.6937 -8.8047 17 1 -3.4299 3.3870 -9.5377 18 6 2.1634 -1.2097 0.0005 19 6 1.4704 -2.4135 0.0005 20 6 2.1640 -3.6078 0.0005 21 6 3.5469 -3.6060 0.0011 22 7 4.2869 -4.8878 0.0016 23 8 3.6779 -5.9425 0.0012 24 8 5.5049 -4.8878 0.0016 25 6 4.2399 -2.4093 0.0069 26 6 3.5525 -1.2115 0.0008 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0732 2.6063 -1.4439 33 1 2.9642 0.9130 -1.9816 34 1 -0.6741 1.8328 -4.1375 35 1 -0.5647 3.5259 -3.5993 36 1 -0.5275 4.4365 -9.4208 37 1 0.3904 -2.4157 0.0008 38 1 1.6259 -4.5441 0.0001 39 1 5.3199 -2.4115 0.0120 40 1 4.0943 -0.2772 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064712492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:04 Heat of formation + Delta-G solvation = -53.066087 kcal Electronic energy + Delta-G solvation = -25752.731979 eV Core-core repulsion = 21662.722190 eV Total energy + Delta-G solvation = -4090.009789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.21021 -40.55187 -39.99051 -37.36588 -36.60554 -36.04550 -32.57259 -32.32221 -31.64186 -30.60787 -29.47953 -27.37877 -25.71964 -25.45334 -23.65524 -22.93672 -21.51495 -21.05772 -19.54605 -18.72339 -18.13851 -17.85245 -17.56555 -17.15191 -16.92840 -16.22034 -15.91590 -15.48975 -15.08604 -14.92896 -14.61813 -14.36773 -14.20318 -13.69454 -13.60040 -13.37439 -13.10506 -12.93441 -12.69969 -12.62601 -12.23422 -12.00424 -11.64944 -11.51426 -11.26370 -11.21871 -11.17343 -11.16713 -10.91533 -10.81103 -10.67744 -10.17699 -9.98065 -9.79906 -9.20819 -8.46450 -8.17061 -6.70785 -6.35995 -4.09668 -0.20410 0.65006 1.25801 1.38962 2.30739 2.46996 2.49500 3.01607 3.13274 3.16107 3.22515 3.37945 3.99627 4.06011 4.14011 4.31534 4.39316 4.48493 4.53524 4.68401 4.77347 4.84791 4.97123 5.00192 5.05212 5.11784 5.24678 5.28190 5.28869 5.38120 5.45316 5.48820 5.53349 5.62543 5.83529 5.92582 6.30290 6.43248 6.47311 6.66707 7.46783 7.59242 7.98660 8.21493 9.09654 10.71529 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002009 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.037264 B =13931.478370 C =14330.359685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.117 3.883 4 C 0.042 3.958 5 O -0.360 6.360 6 C 0.479 3.521 7 O -0.485 6.485 8 C -0.128 4.128 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.866 5.866 14 Si 0.922 3.078 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.268 3.732 19 C -0.198 4.198 20 C -0.002 4.002 21 C -0.113 4.113 22 N 0.043 4.957 23 O -0.180 6.180 24 O -0.179 6.179 25 C -0.001 4.001 26 C -0.203 4.203 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.270 0.730 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -8.643 22.416 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.310 5.310 3 C -0.006 4.006 4 C -0.034 4.034 5 O -0.278 6.278 6 C 0.320 3.680 7 O -0.370 6.370 8 C -0.276 4.276 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.095 0.905 12 C -0.135 4.135 13 N -0.501 5.501 14 Si 0.748 3.252 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.204 1.204 18 C 0.160 3.840 19 C -0.221 4.221 20 C -0.022 4.022 21 C -0.200 4.200 22 N 0.556 4.444 23 O -0.392 6.392 24 O -0.392 6.392 25 C -0.021 4.021 26 C -0.226 4.226 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.112 -7.659 21.580 23.265 hybrid contribution -1.921 -0.194 0.053 1.932 sum 2.191 -7.852 21.633 23.118 Atomic orbital electron populations 1.21940 0.77769 1.04566 1.01760 1.46827 1.06281 1.02581 1.75345 1.21793 0.98761 0.85110 0.94900 1.23531 0.85069 1.01797 0.92954 1.86488 1.35125 1.78588 1.27597 1.23347 0.91952 0.73243 0.79474 1.90685 1.31657 1.47380 1.67321 1.23292 0.95097 1.05630 1.03560 1.85472 1.12516 1.86649 0.98581 1.22860 0.91996 1.53258 1.00376 0.90541 1.25017 0.98371 0.94511 0.95643 1.70012 1.29515 1.43039 1.07542 0.86060 0.82096 0.78171 0.78853 1.19511 1.20448 1.20444 1.18259 0.91445 0.86446 0.87884 1.20692 1.00865 0.89512 1.11075 1.20752 0.90944 0.99876 0.90639 1.20791 0.92428 0.83377 1.23369 1.43524 1.01089 1.02848 0.96891 1.94512 1.70038 1.20139 1.54496 1.94516 0.95822 1.94342 1.54479 1.20737 1.01507 0.89311 0.90570 1.20676 0.91994 0.98385 1.11563 0.92453 0.89330 0.90816 0.88438 0.87890 0.89887 0.90834 0.88062 0.87957 0.92031 0.83565 0.83150 0.83120 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.01 59.85 0.60 1.07 16 2 N -0.61 -4.04 2.97 -179.62 -0.53 -4.57 16 3 C 0.12 0.67 5.57 -4.04 -0.02 0.65 16 4 C 0.04 0.40 5.81 37.16 0.22 0.61 16 5 O -0.36 -4.57 9.03 -39.26 -0.35 -4.92 16 6 C 0.48 8.23 7.98 36.01 0.29 8.51 16 7 O -0.49 -9.91 15.61 -18.75 -0.29 -10.20 16 8 C -0.13 -2.40 6.27 36.01 0.23 -2.17 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.54 -14.56 9.50 30.94 0.29 -14.27 16 11 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -25.18 13.22 55.49 0.73 -24.44 16 14 Si 0.92 20.58 29.55 -169.99 -5.02 15.55 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 18 C 0.27 1.99 6.55 -83.79 -0.55 1.45 16 19 C -0.20 -1.43 9.21 -39.38 -0.36 -1.79 16 20 C 0.00 -0.02 9.55 -39.61 -0.38 -0.39 16 21 C -0.11 -1.15 6.85 -79.92 -0.55 -1.70 16 22 N 0.04 0.54 4.45 33.98 0.15 0.69 16 23 O -0.18 -2.42 18.44 -29.46 -0.54 -2.96 16 24 O -0.18 -2.42 18.44 -29.46 -0.54 -2.96 16 25 C 0.00 -0.01 9.55 -39.61 -0.38 -0.39 16 26 C -0.20 -1.45 9.21 -39.38 -0.36 -1.81 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.58 7.09 -51.93 -0.37 0.22 16 29 H 0.07 0.39 6.20 -51.92 -0.32 0.07 16 30 H 0.10 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.10 0.36 6.20 -51.93 -0.32 0.03 16 32 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.15 0.77 6.14 -52.48 -0.32 0.45 16 38 H 0.15 1.08 7.60 -52.49 -0.40 0.68 16 39 H 0.15 1.09 7.60 -52.49 -0.40 0.69 16 40 H 0.14 0.72 6.14 -52.49 -0.32 0.40 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -34.30 367.02 -8.69 -43.00 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.53 Total: -2.70 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.07 Total: -8.29 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.35 Total: -28.32 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.73 Total: -21.05 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.30 -8.69 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064712492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.068 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds