Wall clock time and date at job start Sat Apr 11 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.53000 * 109.46915 * 269.99870 * 3 2 1 5 5 O 1.45207 * 109.47058 * 64.99546 * 4 3 2 6 6 C 1.34231 * 116.99764 * 179.97438 * 5 4 3 7 7 O 1.20828 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99873 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47146 * 180.02562 * 8 6 5 10 10 C 1.76200 * 99.99872 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00001 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99799 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00098 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46863 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47350 * 119.99805 * 14 12 10 17 17 H 1.48495 * 109.46682 * 240.00242 * 14 12 10 18 18 C 1.39685 * 119.99828 * 179.97438 * 2 1 3 19 19 C 1.38901 * 120.07549 * 0.02562 * 18 2 1 20 20 C 1.38110 * 119.92652 * 179.97438 * 19 18 2 21 21 C 1.38288 * 120.07099 * 0.02562 * 20 19 18 22 22 N 1.48006 * 119.92324 * 179.97438 * 21 20 19 23 23 O 1.21793 * 119.99877 * 0.02562 * 22 21 20 24 24 O 1.21799 * 119.99945 * 179.97438 * 22 21 20 25 25 C 1.38283 * 120.14964 * 0.25518 * 21 20 19 26 26 C 1.38104 * 120.07445 * 359.44998 * 25 21 20 27 27 H 1.09003 * 109.47269 * 269.99798 * 1 2 3 28 28 H 1.08994 * 109.47173 * 30.00617 * 1 2 3 29 29 H 1.09010 * 109.46989 * 150.00302 * 1 2 3 30 30 H 1.09005 * 109.47076 * 29.99633 * 3 2 1 31 31 H 1.08994 * 109.47209 * 150.00008 * 3 2 1 32 32 H 1.08997 * 109.47103 * 184.99816 * 4 3 2 33 33 H 1.09000 * 109.47581 * 305.00100 * 4 3 2 34 34 H 1.09001 * 109.47038 * 300.00517 * 8 6 5 35 35 H 1.08994 * 109.46913 * 60.00263 * 8 6 5 36 36 H 0.96999 * 119.99836 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.04370 * 359.95628 * 19 18 2 38 38 H 1.07991 * 119.96480 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.96071 * 179.71716 * 25 21 20 40 40 H 1.07999 * 120.04043 * 180.25516 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.1859 1.9979 -2.0918 6 6 1.2347 2.4015 -3.3710 7 8 2.3004 2.5104 -3.9300 8 6 -0.0397 2.7188 -4.1102 9 16 0.3547 3.2301 -5.8010 10 6 -1.2688 3.5300 -6.4166 11 1 -2.1252 3.3821 -5.7755 12 6 -1.4468 3.9574 -7.7251 13 7 -0.4030 4.1382 -8.5062 14 14 -3.1680 4.2760 -8.3775 15 1 -4.1615 3.9999 -7.3088 16 1 -3.2809 5.6937 -8.8047 17 1 -3.4299 3.3870 -9.5377 18 6 2.1634 -1.2097 0.0005 19 6 1.4704 -2.4135 0.0005 20 6 2.1640 -3.6078 0.0005 21 6 3.5469 -3.6060 0.0011 22 7 4.2869 -4.8878 0.0016 23 8 3.6779 -5.9425 0.0012 24 8 5.5049 -4.8878 0.0016 25 6 4.2399 -2.4093 0.0069 26 6 3.5525 -1.2115 0.0008 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.0732 2.6063 -1.4439 33 1 2.9642 0.9130 -1.9816 34 1 -0.6741 1.8328 -4.1375 35 1 -0.5647 3.5259 -3.5993 36 1 -0.5275 4.4365 -9.4208 37 1 0.3904 -2.4157 0.0008 38 1 1.6259 -4.5441 0.0001 39 1 5.3199 -2.4115 0.0120 40 1 4.0943 -0.2772 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064712492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:03 Heat of formation + Delta-G solvation = -72.184641 kcal Electronic energy + Delta-G solvation = -25753.561022 eV Core-core repulsion = 21662.722190 eV Total energy + Delta-G solvation = -4090.838832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.09403 -41.56542 -40.84410 -38.18649 -37.55382 -37.06611 -34.62558 -32.98522 -32.32247 -31.57922 -30.53897 -28.06525 -27.72536 -26.26177 -24.34518 -23.57976 -22.58994 -21.88305 -20.29464 -19.93292 -19.63457 -18.87580 -18.47245 -18.17622 -17.85162 -17.22409 -16.91174 -16.87341 -16.14717 -15.98232 -15.84412 -15.33580 -14.86541 -14.63052 -14.60834 -14.36520 -14.12221 -13.84307 -13.60601 -13.45188 -13.19850 -13.04277 -12.93746 -12.80143 -12.64996 -12.59810 -12.23479 -12.20168 -12.06797 -11.78247 -11.72637 -11.65238 -11.32908 -11.19175 -10.39214 -10.38109 -8.75278 -8.73515 -8.39230 -6.18806 -1.05011 0.07747 0.46527 0.59920 1.01944 1.13019 1.40569 1.41093 1.54936 1.78751 1.90692 2.22204 2.40109 2.96355 3.24921 3.42537 3.58745 3.67943 3.78982 3.86721 3.93196 3.97722 4.16184 4.23368 4.24195 4.31023 4.42509 4.48127 4.61233 4.68940 4.71694 4.75586 4.87955 4.90470 5.03566 5.20098 5.26185 5.39997 5.47173 5.92803 6.10449 6.16690 6.61031 6.69060 7.03082 8.70091 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002009 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.037264 B =13931.478370 C =14330.359685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.603 5.603 3 C 0.121 3.879 4 C 0.035 3.965 5 O -0.343 6.343 6 C 0.488 3.512 7 O -0.524 6.524 8 C -0.107 4.107 9 S -0.144 6.144 10 C -0.545 4.545 11 H 0.087 0.913 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.255 1.255 16 H -0.274 1.274 17 H -0.276 1.276 18 C 0.267 3.733 19 C -0.196 4.196 20 C -0.006 4.006 21 C -0.136 4.136 22 N 0.046 4.954 23 O -0.206 6.206 24 O -0.207 6.207 25 C -0.006 4.006 26 C -0.200 4.200 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.272 0.728 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -7.603 24.296 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.307 5.307 3 C -0.001 4.001 4 C -0.040 4.040 5 O -0.260 6.260 6 C 0.331 3.669 7 O -0.412 6.412 8 C -0.255 4.255 9 S 0.083 5.917 10 C -0.692 4.692 11 H 0.105 0.895 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.201 1.201 18 C 0.157 3.843 19 C -0.219 4.219 20 C -0.026 4.026 21 C -0.223 4.223 22 N 0.552 4.448 23 O -0.414 6.414 24 O -0.415 6.415 25 C -0.026 4.026 26 C -0.223 4.223 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.022 -6.657 23.501 24.510 hybrid contribution -1.291 -0.430 -0.382 1.414 sum 0.731 -7.086 23.120 24.192 Atomic orbital electron populations 1.22083 0.77058 1.04428 1.03058 1.47020 1.06870 1.02552 1.74213 1.21980 1.00730 0.85040 0.92371 1.23950 0.83626 1.01933 0.94516 1.86465 1.37064 1.77441 1.25023 1.22943 0.90584 0.72692 0.80674 1.90684 1.32739 1.49246 1.68556 1.23061 0.96411 1.06934 0.99121 1.85600 1.13943 1.87439 1.04760 1.23210 0.92276 1.52857 1.00894 0.89462 1.26122 1.02873 0.94085 0.95973 1.70168 1.32171 1.44337 1.07996 0.84897 0.76670 0.78018 0.78339 1.17833 1.19970 1.20103 1.18440 0.91729 0.86905 0.87184 1.20925 1.01881 0.88901 1.10162 1.20924 0.90330 1.00855 0.90517 1.21045 0.93107 0.82396 1.25756 1.43901 1.01013 1.03621 0.96264 1.94481 1.69930 1.21400 1.55593 1.94486 0.96671 1.94657 1.55650 1.20916 1.02036 0.89180 0.90467 1.20922 0.92101 0.98691 1.10567 0.90441 0.89989 0.90469 0.86417 0.84894 0.89184 0.92007 0.86222 0.85857 0.91899 0.81485 0.82526 0.82508 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.01 127.77 1.28 1.85 16 2 N -0.60 -5.69 2.97 -722.19 -2.15 -7.84 16 3 C 0.12 0.86 5.57 86.38 0.48 1.35 16 4 C 0.03 0.55 5.81 71.98 0.42 0.97 16 5 O -0.34 -7.74 9.03 -51.42 -0.46 -8.20 16 6 C 0.49 16.04 7.98 71.24 0.57 16.61 16 7 O -0.52 -21.23 15.61 21.96 0.34 -20.88 16 8 C -0.11 -3.84 6.27 71.24 0.45 -3.39 16 9 S -0.14 -7.48 20.57 -56.49 -1.16 -8.64 16 10 C -0.54 -29.36 9.50 67.95 0.65 -28.71 16 11 H 0.09 4.34 7.80 -2.91 -0.02 4.31 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -53.77 13.22 21.65 0.29 -53.48 16 14 Si 1.00 41.64 29.55 68.60 2.03 43.66 16 15 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 18 C 0.27 3.15 6.55 38.21 0.25 3.40 16 19 C -0.20 -2.34 9.21 22.40 0.21 -2.13 16 20 C -0.01 -0.09 9.55 22.25 0.21 0.12 16 21 C -0.14 -2.72 6.85 36.40 0.25 -2.47 16 22 N 0.05 1.21 4.45 -46.42 -0.21 1.00 16 23 O -0.21 -5.81 18.44 18.89 0.35 -5.46 16 24 O -0.21 -5.86 18.44 18.89 0.35 -5.51 16 25 C -0.01 -0.09 9.55 22.25 0.21 0.12 16 26 C -0.20 -2.32 9.21 22.40 0.21 -2.11 16 27 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.08 0.77 7.09 -2.39 -0.02 0.76 16 29 H 0.08 0.54 6.20 -2.38 -0.01 0.53 16 30 H 0.12 0.49 8.07 -2.38 -0.02 0.47 16 31 H 0.13 0.25 6.20 -2.39 -0.01 0.24 16 32 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 33 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 35 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.17 1.23 6.14 -2.91 -0.02 1.21 16 38 H 0.16 2.17 7.60 -2.92 -0.02 2.15 16 39 H 0.16 2.18 7.60 -2.91 -0.02 2.15 16 40 H 0.17 1.05 6.14 -2.91 -0.02 1.04 16 Total: -1.00 -77.15 367.02 6.10 -71.06 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.08 Total: 7.45 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.64 Total: -13.14 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -2.07 Total: -60.32 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: 0.58 Total: -40.06 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Total: -77.15 6.10 -71.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064712492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.129 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds