Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00076 * 2 1 4 4 O 1.20829 * 120.00105 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00041 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99452 * 270.00249 * 6 5 3 8 8 H 1.08009 * 119.99458 * 202.99979 * 7 6 5 9 9 C 1.38946 * 120.00391 * 23.00056 * 7 6 5 10 10 N 1.31406 * 119.99872 * 351.34704 * 9 7 6 11 11 Si 1.86802 * 119.99931 * 171.34859 * 9 7 6 12 12 H 1.48494 * 109.47321 * 90.00142 * 11 9 7 13 13 H 1.48501 * 109.46819 * 209.99872 * 11 9 7 14 14 H 1.48501 * 109.47335 * 329.99633 * 11 9 7 15 15 C 1.34771 * 120.00335 * 89.99485 * 6 5 3 16 16 O 1.21300 * 120.00079 * 5.36916 * 15 6 5 17 17 C 1.50695 * 120.00111 * 185.08342 * 15 6 5 18 18 C 1.50709 * 109.47017 * 175.00636 * 17 15 6 19 19 C 1.38218 * 120.01688 * 264.73003 * 18 17 15 20 20 C 1.38216 * 120.02235 * 179.72385 * 19 18 17 21 21 C 1.38262 * 120.05583 * 0.55026 * 20 19 18 22 22 N 1.48004 * 119.99128 * 179.70318 * 21 20 19 23 23 O 1.21799 * 120.00379 * 180.02562 * 22 21 20 24 24 O 1.21796 * 119.99870 * 0.02562 * 22 21 20 25 25 C 1.38174 * 120.02387 * 359.72871 * 21 20 19 26 26 C 1.38438 * 120.00680 * 85.00892 * 18 17 15 27 27 F 1.35098 * 120.02906 * 0.02562 * 26 18 17 28 28 H 1.08996 * 109.47112 * 59.99327 * 1 2 3 29 29 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46858 * 299.99304 * 1 2 3 31 31 H 1.08999 * 109.47005 * 60.00193 * 5 3 2 32 32 H 1.09004 * 109.47179 * 300.00669 * 5 3 2 33 33 H 0.97001 * 119.99816 * 185.01435 * 10 9 7 34 34 H 1.08999 * 109.47507 * 295.01057 * 17 15 6 35 35 H 1.09001 * 109.47141 * 55.01772 * 17 15 6 36 36 H 1.08002 * 119.98615 * 0.02562 * 19 18 17 37 37 H 1.08010 * 119.97238 * 180.27827 * 20 19 18 38 38 H 1.08000 * 120.01595 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1756 3.3377 -1.1869 8 1 4.8141 4.2081 -1.2238 9 6 3.5507 2.8850 -2.3423 10 7 2.9140 1.7355 -2.3377 11 14 3.6156 3.9105 -3.9024 12 1 4.8107 3.5283 -4.6966 13 1 2.3898 3.6687 -4.7050 14 1 3.6978 5.3497 -3.5457 15 6 4.1733 3.3252 1.1676 16 8 4.0971 2.7190 2.2155 17 6 4.4885 4.7989 1.1709 18 6 4.5340 5.2996 2.5917 19 6 3.4138 5.8796 3.1566 20 6 3.4537 6.3337 4.4614 21 6 4.6173 6.2188 5.1994 22 7 4.6604 6.7115 6.5943 23 8 5.6854 6.6108 7.2444 24 8 3.6708 7.2177 7.0922 25 6 5.7401 5.6446 4.6348 26 6 5.6997 5.1841 3.3294 27 9 6.7971 4.6229 2.7763 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9565 0.7804 0.8891 33 1 2.5403 1.3847 -3.1612 34 1 5.4554 4.9647 0.6960 35 1 3.7164 5.3368 0.6208 36 1 2.5055 5.9735 2.5799 37 1 2.5765 6.7827 4.9036 38 1 6.6488 5.5545 5.2115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155671708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -125.080565 kcal Electronic energy + Delta-G solvation = -29678.022702 eV Core-core repulsion = 25018.676954 eV Total energy + Delta-G solvation = -4659.345748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -49.04319 -42.22228 -39.82792 -39.31610 -38.27840 -36.61988 -35.64987 -34.74134 -33.28574 -31.76400 -31.07331 -29.54781 -28.18178 -26.46166 -25.52623 -24.47882 -23.32587 -22.08423 -20.40847 -19.57443 -19.46690 -18.79982 -17.60862 -17.46098 -16.79868 -16.68675 -16.51637 -16.43336 -15.69296 -15.63800 -15.54610 -15.27190 -14.50061 -14.35753 -14.18339 -13.99933 -13.41841 -13.11823 -12.70411 -12.66667 -12.52367 -12.24161 -11.91990 -11.67110 -11.63637 -11.48249 -11.34758 -11.27378 -11.19704 -11.16610 -11.00189 -10.73404 -10.59184 -9.93819 -9.71357 -9.59765 -9.16713 -9.16285 -8.81810 -8.16902 -6.63806 -4.28727 -0.25597 0.75445 1.26296 1.29826 2.93898 3.03196 3.07082 3.08763 3.31385 3.58746 3.79412 3.89876 3.93888 4.24947 4.32379 4.45862 4.66384 4.74928 4.83222 5.00156 5.37307 5.48749 5.61387 5.64896 5.67779 5.68587 5.79392 5.85747 5.92361 6.10566 6.13860 6.18892 6.36298 6.44226 6.74376 7.10983 7.32286 7.45729 7.59082 8.02541 8.76276 8.97639 9.11083 9.50335 10.37116 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003335 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.604139 B = 8394.517247 C = 9352.671359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.492 3.508 4 O -0.516 6.516 5 C 0.153 3.847 6 N -0.425 5.425 7 C -0.335 4.335 8 H 0.104 0.896 9 C 0.046 3.954 10 N -0.879 5.879 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.474 3.526 16 O -0.598 6.598 17 C -0.096 4.096 18 C -0.023 4.023 19 C -0.081 4.081 20 C -0.062 4.062 21 C -0.031 4.031 22 N 0.034 4.966 23 O -0.164 6.164 24 O -0.160 6.160 25 C -0.094 4.094 26 C 0.120 3.880 27 F -0.117 7.117 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.276 0.724 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 4.384 4.013 6.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.289 6.289 3 C 0.334 3.666 4 O -0.402 6.402 5 C 0.028 3.972 6 N -0.143 5.143 7 C -0.462 4.462 8 H 0.122 0.878 9 C -0.158 4.158 10 N -0.519 5.519 11 Si 0.760 3.240 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.262 3.738 16 O -0.484 6.484 17 C -0.135 4.135 18 C -0.025 4.025 19 C -0.100 4.100 20 C -0.082 4.082 21 C -0.114 4.114 22 N 0.553 4.447 23 O -0.379 6.379 24 O -0.376 6.376 25 C -0.114 4.114 26 C 0.100 3.900 27 F -0.095 7.095 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.572 4.028 3.675 5.482 hybrid contribution -0.137 0.430 -0.820 0.936 sum 0.436 4.458 2.854 5.311 Atomic orbital electron populations 1.22933 0.78759 1.01896 1.01501 1.86464 1.21568 1.35363 1.85528 1.23897 0.92277 0.80468 0.69948 1.90491 1.66751 1.36473 1.46493 1.20676 0.87063 0.85206 1.04266 1.43263 1.57460 1.08474 1.05149 1.19677 1.28082 1.13350 0.85063 0.87843 1.25321 0.93917 0.96226 1.00328 1.69597 1.35614 1.17800 1.28846 0.85807 0.77944 0.79936 0.80290 1.20131 1.20655 1.19225 1.19726 0.82546 0.87758 0.83741 1.90591 1.58102 1.68238 1.31509 1.20602 1.05716 0.96385 0.90844 1.20215 0.91743 0.93321 0.97205 1.21023 0.98546 0.96717 0.93714 1.21038 0.96511 0.96902 0.93702 1.20635 0.97869 1.09740 0.83134 1.43510 1.00144 0.98254 1.02811 1.94534 1.21268 1.60796 1.61289 1.94527 1.25980 1.44220 1.72882 1.20753 0.99177 0.97151 0.94355 1.17022 0.84333 0.97791 0.90871 1.91570 1.50782 1.82304 1.84877 0.92739 0.89529 0.93196 0.84259 0.90359 0.91307 0.87785 0.86857 0.82451 0.82490 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.37 -7.73 10.57 -39.25 -0.41 -8.15 16 3 C 0.49 11.57 5.91 36.00 0.21 11.78 16 4 O -0.52 -13.35 15.94 -18.75 -0.30 -13.65 16 5 C 0.15 3.49 5.29 -5.19 -0.03 3.46 16 6 N -0.43 -9.80 2.11 -116.09 -0.25 -10.05 16 7 C -0.33 -7.58 9.00 -14.93 -0.13 -7.71 16 8 H 0.10 2.13 6.72 -52.48 -0.35 1.77 16 9 C 0.05 1.06 5.41 -17.47 -0.09 0.97 16 10 N -0.88 -20.98 8.21 55.50 0.46 -20.53 16 11 Si 0.93 18.06 29.57 -169.99 -5.03 13.04 16 12 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 15 C 0.47 10.33 7.61 -10.99 -0.08 10.25 16 16 O -0.60 -14.42 15.58 5.54 0.09 -14.34 16 17 C -0.10 -1.62 4.16 -29.03 -0.12 -1.74 16 18 C -0.02 -0.35 4.39 -104.55 -0.46 -0.81 16 19 C -0.08 -1.06 9.68 -39.60 -0.38 -1.44 16 20 C -0.06 -0.76 9.55 -39.58 -0.38 -1.14 16 21 C -0.03 -0.42 6.85 -79.97 -0.55 -0.97 16 22 N 0.03 0.49 4.45 33.95 0.15 0.64 16 23 O -0.16 -2.46 18.45 -29.46 -0.54 -3.01 16 24 O -0.16 -2.36 18.45 -29.46 -0.54 -2.91 16 25 C -0.09 -1.27 9.53 -39.51 -0.38 -1.65 16 26 C 0.12 1.79 7.22 -39.42 -0.28 1.51 16 27 F -0.12 -1.84 16.57 2.25 0.04 -1.81 16 28 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.14 3.20 6.29 -51.93 -0.33 2.87 16 32 H 0.08 1.72 7.35 -51.93 -0.38 1.34 16 33 H 0.28 6.36 8.32 -40.82 -0.34 6.02 16 34 H 0.10 1.61 7.38 -51.93 -0.38 1.23 16 35 H 0.11 1.79 7.95 -51.93 -0.41 1.37 16 36 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.16 1.57 7.61 -52.48 -0.40 1.17 16 38 H 0.16 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -29.54 348.07 -6.19 -35.72 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.48 Total: 5.49 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -1.61 Total: 14.29 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.36 Total: -29.93 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.71 Total: -42.05 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.54 -6.19 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155671708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.358 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds