Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00076 * 2 1 4 4 O 1.20829 * 120.00105 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00041 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99452 * 270.00249 * 6 5 3 8 8 H 1.08009 * 119.99458 * 202.99979 * 7 6 5 9 9 C 1.38946 * 120.00391 * 23.00056 * 7 6 5 10 10 N 1.31406 * 119.99872 * 351.34704 * 9 7 6 11 11 Si 1.86802 * 119.99931 * 171.34859 * 9 7 6 12 12 H 1.48494 * 109.47321 * 90.00142 * 11 9 7 13 13 H 1.48501 * 109.46819 * 209.99872 * 11 9 7 14 14 H 1.48501 * 109.47335 * 329.99633 * 11 9 7 15 15 C 1.34771 * 120.00335 * 89.99485 * 6 5 3 16 16 O 1.21300 * 120.00079 * 5.36916 * 15 6 5 17 17 C 1.50695 * 120.00111 * 185.08342 * 15 6 5 18 18 C 1.50709 * 109.47017 * 175.00636 * 17 15 6 19 19 C 1.38218 * 120.01688 * 264.73003 * 18 17 15 20 20 C 1.38216 * 120.02235 * 179.72385 * 19 18 17 21 21 C 1.38262 * 120.05583 * 0.55026 * 20 19 18 22 22 N 1.48004 * 119.99128 * 179.70318 * 21 20 19 23 23 O 1.21799 * 120.00379 * 180.02562 * 22 21 20 24 24 O 1.21796 * 119.99870 * 0.02562 * 22 21 20 25 25 C 1.38174 * 120.02387 * 359.72871 * 21 20 19 26 26 C 1.38438 * 120.00680 * 85.00892 * 18 17 15 27 27 F 1.35098 * 120.02906 * 0.02562 * 26 18 17 28 28 H 1.08996 * 109.47112 * 59.99327 * 1 2 3 29 29 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46858 * 299.99304 * 1 2 3 31 31 H 1.08999 * 109.47005 * 60.00193 * 5 3 2 32 32 H 1.09004 * 109.47179 * 300.00669 * 5 3 2 33 33 H 0.97001 * 119.99816 * 185.01435 * 10 9 7 34 34 H 1.08999 * 109.47507 * 295.01057 * 17 15 6 35 35 H 1.09001 * 109.47141 * 55.01772 * 17 15 6 36 36 H 1.08002 * 119.98615 * 0.02562 * 19 18 17 37 37 H 1.08010 * 119.97238 * 180.27827 * 20 19 18 38 38 H 1.08000 * 120.01595 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1756 3.3377 -1.1869 8 1 4.8141 4.2081 -1.2238 9 6 3.5507 2.8850 -2.3423 10 7 2.9140 1.7355 -2.3377 11 14 3.6156 3.9105 -3.9024 12 1 4.8107 3.5283 -4.6966 13 1 2.3898 3.6687 -4.7050 14 1 3.6978 5.3497 -3.5457 15 6 4.1733 3.3252 1.1676 16 8 4.0971 2.7190 2.2155 17 6 4.4885 4.7989 1.1709 18 6 4.5340 5.2996 2.5917 19 6 3.4138 5.8796 3.1566 20 6 3.4537 6.3337 4.4614 21 6 4.6173 6.2188 5.1994 22 7 4.6604 6.7115 6.5943 23 8 5.6854 6.6108 7.2444 24 8 3.6708 7.2177 7.0922 25 6 5.7401 5.6446 4.6348 26 6 5.6997 5.1841 3.3294 27 9 6.7971 4.6229 2.7763 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9565 0.7804 0.8891 33 1 2.5403 1.3847 -3.1612 34 1 5.4554 4.9647 0.6960 35 1 3.7164 5.3368 0.6208 36 1 2.5055 5.9735 2.5799 37 1 2.5765 6.7827 4.9036 38 1 6.6488 5.5545 5.2115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155671708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -139.410384 kcal Electronic energy + Delta-G solvation = -29678.644090 eV Core-core repulsion = 25018.676954 eV Total energy + Delta-G solvation = -4659.967135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.21425 -43.34995 -41.43330 -40.70728 -39.80967 -37.76383 -37.36269 -36.51676 -34.52238 -33.50347 -32.13132 -31.01801 -29.60935 -27.91835 -26.98620 -25.98309 -24.38661 -23.29583 -22.05841 -21.17142 -20.68295 -19.93360 -19.09782 -18.72653 -18.50073 -18.17931 -17.83005 -17.55681 -17.26777 -17.05947 -16.87602 -16.78571 -16.07988 -15.84095 -15.65014 -15.20951 -14.68669 -14.56761 -14.23604 -14.19018 -13.77884 -13.43284 -13.33675 -13.09386 -13.00422 -12.90192 -12.84010 -12.69292 -12.59628 -12.41528 -12.35563 -12.28333 -12.12798 -11.58152 -11.48650 -10.93995 -10.87324 -10.43895 -10.19185 -9.93591 -8.35565 -6.05073 -1.37994 -0.29435 0.13033 0.19005 1.38934 1.48744 1.58304 1.67188 1.81144 1.97037 2.18785 2.33365 2.80248 2.87524 3.12119 3.22249 3.30986 3.46527 3.68448 3.95642 4.13925 4.26167 4.33184 4.35501 4.39090 4.43922 4.54234 4.57774 4.61249 4.70696 4.72345 4.94068 4.96636 5.03758 5.33031 5.40639 5.61876 5.72668 6.28672 6.43144 7.02992 7.20198 7.40042 7.79522 8.65337 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003335 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.604139 B = 8394.517247 C = 9352.671359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.493 3.507 4 O -0.546 6.546 5 C 0.151 3.849 6 N -0.439 5.439 7 C -0.346 4.346 8 H 0.123 0.877 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.995 3.005 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.255 1.255 15 C 0.464 3.536 16 O -0.627 6.627 17 C -0.087 4.087 18 C -0.038 4.038 19 C -0.078 4.078 20 C -0.050 4.050 21 C -0.036 4.036 22 N 0.034 4.966 23 O -0.180 6.180 24 O -0.156 6.156 25 C -0.090 4.090 26 C 0.107 3.893 27 F -0.127 7.127 28 H 0.045 0.955 29 H 0.131 0.869 30 H 0.052 0.948 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.272 0.728 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 5.528 3.903 6.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.337 3.663 4 O -0.435 6.435 5 C 0.025 3.975 6 N -0.157 5.157 7 C -0.472 4.472 8 H 0.140 0.860 9 C -0.198 4.198 10 N -0.544 5.544 11 Si 0.819 3.181 12 H -0.195 1.195 13 H -0.221 1.221 14 H -0.179 1.179 15 C 0.255 3.745 16 O -0.515 6.515 17 C -0.126 4.126 18 C -0.040 4.040 19 C -0.096 4.096 20 C -0.068 4.068 21 C -0.120 4.120 22 N 0.551 4.449 23 O -0.391 6.391 24 O -0.374 6.374 25 C -0.110 4.110 26 C 0.086 3.914 27 F -0.105 7.105 28 H 0.064 0.936 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.195 0.805 37 H 0.201 0.799 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.107 5.161 3.581 6.283 hybrid contribution -0.054 0.002 -0.722 0.724 sum 0.054 5.163 2.859 5.902 Atomic orbital electron populations 1.23281 0.76262 1.04787 1.01189 1.86432 1.24013 1.33952 1.84948 1.23958 0.92500 0.80700 0.69153 1.90452 1.67422 1.37498 1.48097 1.20644 0.87125 0.85886 1.03814 1.43509 1.57701 1.08566 1.05902 1.20114 1.28323 1.13758 0.85004 0.85997 1.26122 0.93660 0.96970 1.03006 1.69698 1.36515 1.19039 1.29113 0.84869 0.77278 0.79132 0.76789 1.19451 1.22068 1.17890 1.20521 0.81480 0.89651 0.82879 1.90558 1.59159 1.69446 1.32372 1.20520 1.06671 0.92886 0.92552 1.20229 0.92694 0.94473 0.96597 1.21255 0.98456 0.95842 0.94042 1.21322 0.96798 0.95611 0.93116 1.20773 0.98476 1.09998 0.82716 1.43625 1.00011 0.98119 1.03098 1.94539 1.21443 1.61465 1.61696 1.94516 1.25881 1.43957 1.73073 1.20837 0.99821 0.96496 0.93863 1.17145 0.84218 0.98539 0.91454 1.91542 1.51239 1.82629 1.85083 0.93604 0.85068 0.92966 0.84895 0.90389 0.91733 0.86577 0.85582 0.80524 0.79898 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.56 113.37 1.20 2.43 16 2 O -0.38 -15.59 10.57 -51.39 -0.54 -16.14 16 3 C 0.49 23.42 5.91 71.24 0.42 23.85 16 4 O -0.55 -28.45 15.94 21.95 0.35 -28.10 16 5 C 0.15 7.00 5.29 85.63 0.45 7.46 16 6 N -0.44 -20.27 2.11 -639.60 -1.35 -21.62 16 7 C -0.35 -15.42 9.00 84.04 0.76 -14.66 16 8 H 0.12 4.82 6.72 -2.91 -0.02 4.80 16 9 C 0.00 0.16 5.41 84.93 0.46 0.62 16 10 N -0.90 -43.42 8.21 21.66 0.18 -43.24 16 11 Si 1.00 36.27 29.57 68.60 2.03 38.30 16 12 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 13 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 15 C 0.46 20.15 7.61 87.66 0.67 20.82 16 16 O -0.63 -30.40 15.58 -3.09 -0.05 -30.44 16 17 C -0.09 -2.84 4.16 29.10 0.12 -2.72 16 18 C -0.04 -1.11 4.39 -19.82 -0.09 -1.20 16 19 C -0.08 -1.84 9.68 22.26 0.22 -1.63 16 20 C -0.05 -1.08 9.55 22.27 0.21 -0.87 16 21 C -0.04 -0.92 6.85 36.37 0.25 -0.67 16 22 N 0.03 0.93 4.45 -46.49 -0.21 0.72 16 23 O -0.18 -5.20 18.45 18.89 0.35 -4.85 16 24 O -0.16 -4.29 18.45 18.89 0.35 -3.94 16 25 C -0.09 -2.32 9.53 22.31 0.21 -2.11 16 26 C 0.11 3.08 7.22 22.38 0.16 3.25 16 27 F -0.13 -3.94 16.57 44.97 0.75 -3.19 16 28 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.13 6.28 6.29 -2.39 -0.02 6.27 16 32 H 0.08 3.53 7.35 -2.39 -0.02 3.51 16 33 H 0.27 12.70 8.32 -92.71 -0.77 11.93 16 34 H 0.12 3.45 7.38 -2.39 -0.02 3.43 16 35 H 0.13 3.75 7.95 -2.39 -0.02 3.73 16 36 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.18 3.03 7.61 -2.91 -0.02 3.01 16 38 H 0.17 3.92 7.61 -2.91 -0.02 3.89 16 Total: -1.00 -63.19 348.07 8.02 -55.17 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.14 Total: 22.80 kcal Atomic # 6 Polarization: 29.51 SS G_CDS: 5.04 Total: 34.55 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -1.38 Total: -64.14 kcal Atomic # 8 Polarization: -83.94 SS G_CDS: 0.46 Total: -83.48 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.75 Total: -3.19 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -63.19 8.02 -55.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155671708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.243 kcal (2) G-P(sol) polarization free energy of solvation -63.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds