Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00225 * 2 1 4 4 C 1.52998 * 109.47293 * 179.97438 * 3 2 1 5 5 S 1.81004 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.76199 * 99.99965 * 180.02562 * 5 4 3 7 7 C 1.39063 * 120.19337 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.06520 * 179.97438 * 7 6 5 9 9 C 1.38702 * 120.46065 * 359.97438 * 8 7 6 10 10 N 1.48020 * 119.80832 * 180.02562 * 9 8 7 11 11 O 1.31702 * 119.99584 * 359.97438 * 10 9 8 12 12 O 1.31696 * 120.00188 * 179.97438 * 10 9 8 13 13 C 1.37684 * 120.38889 * 359.75539 * 9 8 7 14 14 C 1.39857 * 119.91729 * 0.52091 * 13 9 8 15 15 C 1.47194 * 120.22109 * 179.73651 * 14 13 9 16 16 O 1.21546 * 119.99778 * 123.23156 * 15 14 13 17 17 N 1.34772 * 120.00246 * 303.50644 * 15 14 13 18 18 C 1.46504 * 120.00079 * 3.75095 * 17 15 14 19 19 C 1.33291 * 120.00215 * 183.74962 * 17 15 14 20 20 H 1.08003 * 120.00293 * 351.72011 * 19 17 15 21 21 C 1.46799 * 120.00336 * 171.71746 * 19 17 15 22 22 N 1.29310 * 119.99577 * 7.11973 * 21 19 17 23 23 Si 1.86800 * 120.00002 * 187.12349 * 21 19 17 24 24 H 1.48492 * 109.47246 * 90.00245 * 23 21 19 25 25 H 1.48501 * 109.46781 * 209.99912 * 23 21 19 26 26 H 1.48504 * 109.46996 * 329.99669 * 23 21 19 27 27 H 1.09003 * 109.46943 * 299.99873 * 1 2 3 28 28 H 1.08998 * 109.47016 * 60.00005 * 1 2 3 29 29 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47352 * 59.99334 * 3 2 1 31 31 H 1.09000 * 109.46956 * 300.00278 * 3 2 1 32 32 H 1.09006 * 109.47212 * 60.00133 * 4 3 2 33 33 H 1.08993 * 109.47370 * 299.99684 * 4 3 2 34 34 H 1.08001 * 119.96468 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.77129 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.03648 * 180.28048 * 13 9 8 37 37 H 1.08994 * 109.46706 * 356.62911 * 18 17 15 38 38 H 1.09002 * 109.47178 * 116.63518 * 18 17 15 39 39 H 1.09004 * 109.46889 * 236.63151 * 18 17 15 40 40 H 0.97003 * 120.00080 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2717 2.8381 -0.0001 6 6 5.9813 2.4118 0.0000 7 6 6.3691 1.0763 0.0001 8 6 7.7078 0.7457 -0.0004 9 6 8.6771 1.7378 -0.0014 10 7 10.1099 1.3666 -0.0024 11 8 10.4612 0.0973 -0.0019 12 8 11.0335 2.3055 -0.0039 13 6 8.3143 3.0660 -0.0071 14 6 6.9611 3.4195 -0.0008 15 6 6.5658 4.8374 -0.0009 16 8 5.8425 5.2665 -0.8785 17 7 7.0103 5.6610 0.9688 18 6 7.9521 5.1658 1.9758 19 6 6.5931 6.9263 1.0117 20 1 6.0075 7.3297 0.1988 21 6 6.9295 7.7715 2.1638 22 7 7.7428 7.3356 3.0698 23 14 6.1827 9.4764 2.3212 24 1 4.9052 9.3898 3.0732 25 1 7.1255 10.3646 3.0476 26 1 5.9240 10.0303 0.9678 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8892 33 1 3.8568 0.6439 0.8908 34 1 5.6210 0.2974 -0.0004 35 1 8.0036 -0.2930 -0.0008 36 1 9.0738 3.8339 -0.0124 37 1 8.1294 4.1024 1.8155 38 1 8.8937 5.7082 1.8905 39 1 7.5337 5.3185 2.9707 40 1 7.9655 7.8942 3.8309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162338555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = 2.573355 kcal Electronic energy + Delta-G solvation = -26823.856155 eV Core-core repulsion = 22736.259073 eV Total energy + Delta-G solvation = -4087.597082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.24751 -38.71440 -38.23524 -37.55481 -34.97038 -34.23797 -32.58784 -32.22973 -31.60853 -31.13095 -26.92367 -26.71472 -26.40498 -25.21426 -23.79736 -22.70442 -22.40411 -20.00033 -18.11710 -17.92612 -17.67448 -17.21119 -17.03293 -16.50447 -16.26383 -15.78657 -15.61507 -15.29934 -14.94804 -14.67340 -14.48143 -14.24516 -14.11777 -13.77890 -13.18593 -12.94467 -12.55475 -12.31591 -12.09364 -12.05200 -11.82849 -11.66069 -11.52660 -11.30024 -11.17545 -11.11236 -10.93944 -10.62567 -10.50916 -10.40493 -10.30443 -10.19670 -10.02840 -9.36937 -9.19332 -8.56714 -8.39013 -7.52423 -6.78354 -3.87173 -0.56811 0.87993 1.10309 1.18253 1.38321 2.16739 2.87624 3.04040 3.07514 3.12243 3.56625 3.69073 3.84388 4.34085 4.39550 4.53639 4.56211 4.64598 4.78124 4.91311 5.01753 5.02118 5.03358 5.05567 5.22577 5.33350 5.35475 5.40503 5.49380 5.63478 5.73744 5.86970 6.02184 6.08942 6.38163 6.74200 6.75179 6.88409 6.96137 7.13932 7.70077 8.13683 8.84977 9.10062 9.79204 10.13850 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.006921 B = 0.004657 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4044.496881 B = 6010.693038 C = 9573.122984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.079 3.921 4 C -0.158 4.158 5 S 0.023 5.977 6 C -0.029 4.029 7 C -0.139 4.139 8 C -0.043 4.043 9 C -0.020 4.020 10 N -0.008 5.008 11 O -0.190 6.190 12 O -0.178 6.178 13 C -0.013 4.013 14 C -0.062 4.062 15 C 0.419 3.581 16 O -0.583 6.583 17 N -0.387 5.387 18 C 0.088 3.912 19 C -0.330 4.330 20 H 0.118 0.882 21 C 0.041 3.959 22 N -0.830 5.830 23 Si 0.938 3.062 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.261 1.261 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -11.478 -0.680 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.001 3.999 4 C -0.306 4.306 5 S 0.273 5.727 6 C -0.146 4.146 7 C -0.164 4.164 8 C -0.065 4.065 9 C -0.110 4.110 10 N 0.468 4.532 11 O -0.380 6.380 12 O -0.370 6.370 13 C -0.036 4.036 14 C -0.073 4.073 15 C 0.210 3.790 16 O -0.472 6.472 17 N -0.098 5.098 18 C -0.056 4.056 19 C -0.459 4.459 20 H 0.135 0.865 21 C -0.172 4.172 22 N -0.464 5.464 23 Si 0.763 3.237 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.185 1.185 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.265 -10.061 -0.850 14.398 hybrid contribution 0.964 -0.458 0.345 1.121 sum -9.301 -10.520 -0.506 14.051 Atomic orbital electron populations 1.22770 0.80440 1.02917 1.00352 1.87852 1.20122 1.27385 1.95559 1.22054 0.90753 0.85183 1.01886 1.23903 0.98519 1.01124 1.07040 1.86789 0.93599 1.04409 1.87915 1.22438 0.98871 0.95307 0.98005 1.21084 0.95661 0.94644 1.05054 1.20809 0.91077 0.99623 0.94989 1.20172 0.77663 0.95347 1.17817 1.50443 1.04577 1.02602 0.95611 1.96227 1.89025 0.96372 1.56381 1.96287 1.44175 1.40797 1.55764 1.21287 0.96855 0.93987 0.91475 1.19897 0.90264 0.95996 1.01161 1.16975 0.90130 0.83779 0.88108 1.90637 1.43377 1.74717 1.38462 1.42639 1.34700 1.09543 1.22911 1.22251 0.94345 0.94778 0.94184 1.20820 1.33766 0.86269 1.05059 0.86471 1.27035 0.95077 1.00938 0.94122 1.69135 1.28478 1.38272 1.10478 0.85725 0.78993 0.79546 0.79478 1.19641 1.20416 1.18492 0.93792 0.93779 0.89411 0.91969 0.91889 0.88155 0.88253 0.83288 0.82846 0.82262 0.95148 0.91398 0.89164 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.99 10.70 -35.23 -0.38 -4.36 16 3 C 0.08 0.79 5.94 37.16 0.22 1.01 16 4 C -0.16 -1.68 4.54 37.16 0.17 -1.51 16 5 S 0.02 0.36 20.43 -107.50 -2.20 -1.84 16 6 C -0.03 -0.47 6.16 -38.40 -0.24 -0.71 16 7 C -0.14 -1.77 9.17 -39.40 -0.36 -2.14 16 8 C -0.04 -0.57 9.56 -39.54 -0.38 -0.95 16 9 C -0.02 -0.32 6.88 -79.98 -0.55 -0.87 16 10 N -0.01 -0.14 4.98 33.95 0.17 0.03 16 11 O -0.19 -3.29 19.13 -31.57 -0.60 -3.90 16 12 O -0.18 -3.36 19.13 -31.57 -0.60 -3.97 16 13 C -0.01 -0.23 6.95 -39.18 -0.27 -0.50 16 14 C -0.06 -1.18 4.81 -104.78 -0.50 -1.69 16 15 C 0.42 9.85 6.39 -12.63 -0.08 9.77 16 16 O -0.58 -15.41 15.72 5.33 0.08 -15.32 16 17 N -0.39 -9.37 2.93 -121.93 -0.36 -9.73 16 18 C 0.09 1.89 8.16 59.85 0.49 2.38 16 19 C -0.33 -8.48 9.75 -13.46 -0.13 -8.62 16 20 H 0.12 3.19 7.22 -52.48 -0.38 2.81 16 21 C 0.04 0.98 5.62 -15.15 -0.09 0.89 16 22 N -0.83 -19.39 9.59 56.00 0.54 -18.85 16 23 Si 0.94 18.57 29.65 -169.99 -5.04 13.53 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.98 7.54 -51.91 -0.39 0.59 16 33 H 0.10 0.96 7.54 -51.92 -0.39 0.57 16 34 H 0.15 1.41 5.50 -52.49 -0.29 1.13 16 35 H 0.15 1.67 7.56 -52.49 -0.40 1.27 16 36 H 0.16 2.88 7.04 -52.49 -0.37 2.51 16 37 H 0.03 0.58 4.61 -51.93 -0.24 0.34 16 38 H 0.07 1.51 7.59 -51.93 -0.39 1.11 16 39 H 0.09 2.04 6.48 -51.93 -0.34 1.70 16 40 H 0.28 6.10 8.26 -40.82 -0.34 5.76 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -29.37 358.58 -8.03 -37.40 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.43 Total: 3.20 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.61 Total: -1.59 kcal Atomic # 7 Polarization: -28.90 SS G_CDS: 0.35 Total: -28.55 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.50 Total: -27.55 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.04 Total: 13.53 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.20 Total: -1.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.37 -8.03 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162338555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.970 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds