Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00225 * 2 1 4 4 C 1.52998 * 109.47293 * 179.97438 * 3 2 1 5 5 S 1.81004 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.76199 * 99.99965 * 180.02562 * 5 4 3 7 7 C 1.39063 * 120.19337 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.06520 * 179.97438 * 7 6 5 9 9 C 1.38702 * 120.46065 * 359.97438 * 8 7 6 10 10 N 1.48020 * 119.80832 * 180.02562 * 9 8 7 11 11 O 1.31702 * 119.99584 * 359.97438 * 10 9 8 12 12 O 1.31696 * 120.00188 * 179.97438 * 10 9 8 13 13 C 1.37684 * 120.38889 * 359.75539 * 9 8 7 14 14 C 1.39857 * 119.91729 * 0.52091 * 13 9 8 15 15 C 1.47194 * 120.22109 * 179.73651 * 14 13 9 16 16 O 1.21546 * 119.99778 * 123.23156 * 15 14 13 17 17 N 1.34772 * 120.00246 * 303.50644 * 15 14 13 18 18 C 1.46504 * 120.00079 * 3.75095 * 17 15 14 19 19 C 1.33291 * 120.00215 * 183.74962 * 17 15 14 20 20 H 1.08003 * 120.00293 * 351.72011 * 19 17 15 21 21 C 1.46799 * 120.00336 * 171.71746 * 19 17 15 22 22 N 1.29310 * 119.99577 * 7.11973 * 21 19 17 23 23 Si 1.86800 * 120.00002 * 187.12349 * 21 19 17 24 24 H 1.48492 * 109.47246 * 90.00245 * 23 21 19 25 25 H 1.48501 * 109.46781 * 209.99912 * 23 21 19 26 26 H 1.48504 * 109.46996 * 329.99669 * 23 21 19 27 27 H 1.09003 * 109.46943 * 299.99873 * 1 2 3 28 28 H 1.08998 * 109.47016 * 60.00005 * 1 2 3 29 29 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47352 * 59.99334 * 3 2 1 31 31 H 1.09000 * 109.46956 * 300.00278 * 3 2 1 32 32 H 1.09006 * 109.47212 * 60.00133 * 4 3 2 33 33 H 1.08993 * 109.47370 * 299.99684 * 4 3 2 34 34 H 1.08001 * 119.96468 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.77129 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.03648 * 180.28048 * 13 9 8 37 37 H 1.08994 * 109.46706 * 356.62911 * 18 17 15 38 38 H 1.09002 * 109.47178 * 116.63518 * 18 17 15 39 39 H 1.09004 * 109.46889 * 236.63151 * 18 17 15 40 40 H 0.97003 * 120.00080 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2717 2.8381 -0.0001 6 6 5.9813 2.4118 0.0000 7 6 6.3691 1.0763 0.0001 8 6 7.7078 0.7457 -0.0004 9 6 8.6771 1.7378 -0.0014 10 7 10.1099 1.3666 -0.0024 11 8 10.4612 0.0973 -0.0019 12 8 11.0335 2.3055 -0.0039 13 6 8.3143 3.0660 -0.0071 14 6 6.9611 3.4195 -0.0008 15 6 6.5658 4.8374 -0.0009 16 8 5.8425 5.2665 -0.8785 17 7 7.0103 5.6610 0.9688 18 6 7.9521 5.1658 1.9758 19 6 6.5931 6.9263 1.0117 20 1 6.0075 7.3297 0.1988 21 6 6.9295 7.7715 2.1638 22 7 7.7428 7.3356 3.0698 23 14 6.1827 9.4764 2.3212 24 1 4.9052 9.3898 3.0732 25 1 7.1255 10.3646 3.0476 26 1 5.9240 10.0303 0.9678 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8892 33 1 3.8568 0.6439 0.8908 34 1 5.6210 0.2974 -0.0004 35 1 8.0036 -0.2930 -0.0008 36 1 9.0738 3.8339 -0.0124 37 1 8.1294 4.1024 1.8155 38 1 8.8937 5.7082 1.8905 39 1 7.5337 5.3185 2.9707 40 1 7.9655 7.8942 3.8309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162338555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -14.745242 kcal Electronic energy + Delta-G solvation = -26824.607146 eV Core-core repulsion = 22736.259073 eV Total energy + Delta-G solvation = -4088.348073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68619 -40.29914 -39.03872 -38.90783 -36.82517 -35.62392 -34.18994 -33.48354 -32.90903 -32.28413 -28.40083 -27.97968 -27.39073 -26.87483 -24.99922 -23.83779 -23.74842 -21.53822 -19.66290 -19.26694 -19.10375 -18.81210 -17.94482 -17.78639 -17.23368 -17.14745 -16.91075 -16.72298 -16.23109 -16.02726 -15.81066 -15.52507 -15.20677 -15.05336 -14.67990 -14.32497 -13.96918 -13.65038 -13.57212 -13.07312 -13.02035 -12.91044 -12.81140 -12.74637 -12.53961 -12.36186 -12.32754 -12.24475 -12.11351 -11.92194 -11.47072 -11.40406 -11.14538 -10.72214 -10.62731 -10.31590 -10.23447 -8.78263 -8.55593 -5.81741 -1.92839 -0.42258 -0.18722 -0.08987 0.15824 1.08311 1.28585 1.38992 1.49691 1.72019 2.07326 2.20624 2.77947 2.86891 2.91008 3.21003 3.33645 3.56314 3.67026 3.77719 3.81011 3.88395 4.17551 4.25103 4.31003 4.43514 4.48091 4.48319 4.48595 4.58373 4.62378 4.65716 4.69536 4.86396 4.95129 5.08750 5.11932 5.31193 5.56616 5.81643 6.06979 6.29519 7.01574 7.29935 7.97437 8.36249 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.006921 B = 0.004657 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4044.496881 B = 6010.693038 C = 9573.122984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.079 3.921 4 C -0.138 4.138 5 S -0.033 6.033 6 C -0.016 4.016 7 C -0.121 4.121 8 C -0.006 4.006 9 C -0.029 4.029 10 N -0.005 5.005 11 O -0.148 6.148 12 O -0.242 6.242 13 C -0.016 4.016 14 C -0.093 4.093 15 C 0.423 3.577 16 O -0.622 6.622 17 N -0.404 5.404 18 C 0.105 3.895 19 C -0.387 4.387 20 H 0.086 0.914 21 C 0.017 3.983 22 N -0.846 5.846 23 Si 0.998 3.002 24 H -0.264 1.264 25 H -0.263 1.263 26 H -0.271 1.271 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.198 0.802 35 H 0.196 0.804 36 H 0.142 0.858 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 -15.358 -0.228 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.001 3.999 4 C -0.286 4.286 5 S 0.218 5.782 6 C -0.133 4.133 7 C -0.146 4.146 8 C -0.028 4.028 9 C -0.120 4.120 10 N 0.468 4.532 11 O -0.352 6.352 12 O -0.418 6.418 13 C -0.039 4.039 14 C -0.104 4.104 15 C 0.214 3.786 16 O -0.513 6.513 17 N -0.116 5.116 18 C -0.037 4.037 19 C -0.516 4.516 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.479 5.479 23 Si 0.820 3.180 24 H -0.189 1.189 25 H -0.187 1.187 26 H -0.195 1.195 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.214 0.786 35 H 0.213 0.787 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.461 -13.799 -0.379 17.942 hybrid contribution 1.183 0.298 0.101 1.224 sum -10.278 -13.501 -0.278 16.971 Atomic orbital electron populations 1.22982 0.78953 1.04243 1.00992 1.87809 1.21733 1.27000 1.95670 1.22001 0.90413 0.85494 1.02029 1.23907 0.98518 0.97255 1.08906 1.87137 0.94180 1.09756 1.87134 1.22664 0.98407 0.96204 0.95993 1.21586 0.96464 0.93721 1.02820 1.21385 0.90243 1.00716 0.90455 1.20268 0.77519 0.95317 1.18883 1.50564 1.05014 1.02419 0.95219 1.96188 1.89209 0.96380 1.53422 1.96326 1.44672 1.40923 1.59906 1.21005 0.95881 0.94911 0.92137 1.19495 0.91662 0.94187 1.05038 1.17604 0.88804 0.85458 0.86729 1.90576 1.44604 1.76440 1.39690 1.42723 1.35698 1.09550 1.23614 1.22030 0.92977 0.95694 0.93026 1.20614 1.36759 0.88070 1.06147 0.89576 1.27704 0.94881 1.03701 0.93201 1.69168 1.28558 1.39491 1.10686 0.84873 0.78647 0.75567 0.78921 1.18905 1.18724 1.19520 0.93185 0.93175 0.87788 0.91934 0.91950 0.86226 0.86172 0.78559 0.78658 0.83989 0.92991 0.92967 0.90380 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.87 10.70 -148.98 -1.59 -8.47 16 3 C 0.08 1.35 5.94 71.98 0.43 1.78 16 4 C -0.14 -2.40 4.54 71.98 0.33 -2.07 16 5 S -0.03 -0.98 20.43 -56.49 -1.15 -2.13 16 6 C -0.02 -0.47 6.16 23.03 0.14 -0.33 16 7 C -0.12 -2.45 9.17 22.38 0.21 -2.24 16 8 C -0.01 -0.13 9.56 22.30 0.21 0.09 16 9 C -0.03 -0.87 6.88 36.35 0.25 -0.62 16 10 N -0.01 -0.18 4.98 -46.51 -0.23 -0.41 16 11 O -0.15 -4.54 19.13 3.51 0.07 -4.48 16 12 O -0.24 -9.36 19.13 3.52 0.07 -9.29 16 13 C -0.02 -0.58 6.95 22.53 0.16 -0.43 16 14 C -0.09 -3.60 4.81 -19.97 -0.10 -3.69 16 15 C 0.42 20.98 6.39 86.60 0.55 21.53 16 16 O -0.62 -34.97 15.72 -3.86 -0.06 -35.03 16 17 N -0.40 -20.91 2.93 -657.97 -1.93 -22.84 16 18 C 0.11 4.82 8.16 127.77 1.04 5.87 16 19 C -0.39 -21.45 9.75 86.71 0.85 -20.60 16 20 H 0.09 5.15 7.22 -2.91 -0.02 5.12 16 21 C 0.02 0.83 5.62 87.30 0.49 1.32 16 22 N -0.85 -40.98 9.59 23.26 0.22 -40.76 16 23 Si 1.00 39.39 29.65 68.60 2.03 41.42 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.69 7.54 -2.39 -0.02 1.67 16 33 H 0.12 1.66 7.54 -2.40 -0.02 1.64 16 34 H 0.20 2.23 5.50 -2.91 -0.02 2.21 16 35 H 0.20 2.68 7.56 -2.91 -0.02 2.66 16 36 H 0.14 5.50 7.04 -2.91 -0.02 5.47 16 37 H 0.05 2.08 4.61 -2.39 -0.01 2.07 16 38 H 0.05 2.48 7.59 -2.39 -0.02 2.46 16 39 H 0.08 3.71 6.48 -2.38 -0.02 3.69 16 40 H 0.29 12.77 8.26 -92.71 -0.77 12.01 16 Total: -1.00 -69.79 358.58 4.33 -65.46 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.10 Total: 14.40 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.81 Total: 2.12 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -1.93 Total: -64.01 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -1.52 Total: -57.26 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.15 Total: -2.13 kcal Total: -69.79 4.33 -65.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162338555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.717 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds