Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36951 * 119.99890 * 2 1 4 4 H 1.07997 * 119.99543 * 155.14118 * 3 2 1 5 5 C 1.38993 * 120.00110 * 335.14021 * 3 2 1 6 6 N 1.31393 * 119.99987 * 355.19101 * 5 3 2 7 7 Si 1.86804 * 119.99736 * 175.19185 * 5 3 2 8 8 H 1.48499 * 109.47105 * 59.99899 * 7 5 3 9 9 H 1.48499 * 109.46905 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47091 * 299.99993 * 7 5 3 11 11 C 1.34779 * 119.99693 * 179.97438 * 2 1 3 12 12 O 1.21627 * 119.99359 * 175.51204 * 11 2 1 13 13 C 1.47424 * 120.00200 * 355.79141 * 11 2 1 14 14 C 1.36683 * 125.77413 * 188.49881 * 13 11 2 15 15 N 1.35104 * 106.78235 * 179.97438 * 14 13 11 16 16 C 1.40221 * 126.61129 * 179.97438 * 15 14 13 17 17 C 1.38851 * 120.06373 * 359.72810 * 16 15 14 18 18 C 1.38104 * 119.92791 * 179.72392 * 17 16 15 19 19 C 1.38295 * 120.07171 * 0.55102 * 18 17 16 20 20 C 1.38259 * 120.12580 * 359.72190 * 19 18 17 21 21 C 1.38139 * 120.07000 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.03718 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47123 * 359.97438 * 22 21 20 24 24 F 1.39900 * 109.47162 * 119.97810 * 22 21 20 25 25 F 1.39901 * 109.47576 * 239.97779 * 22 21 20 26 26 N 1.40208 * 106.77706 * 0.02562 * 15 14 13 27 27 N 1.28750 * 108.40409 * 359.72446 * 26 15 14 28 28 H 1.08995 * 109.47197 * 216.07272 * 1 2 3 29 29 H 1.08998 * 109.47126 * 336.07425 * 1 2 3 30 30 H 1.08999 * 109.46927 * 96.06888 * 1 2 3 31 31 H 0.97003 * 120.00162 * 179.97438 * 6 5 3 32 32 H 1.08005 * 126.61078 * 0.02562 * 14 13 11 33 33 H 1.07999 * 120.03814 * 359.97207 * 17 16 15 34 34 H 1.08002 * 119.96371 * 180.25052 * 18 17 16 35 35 H 1.07995 * 119.93800 * 179.70293 * 19 18 17 36 36 H 1.08004 * 119.96791 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1547 1.2293 0.3932 5 6 1.5514 2.3340 -0.5060 6 7 0.3668 2.2633 -1.0701 7 14 2.4314 3.9773 -0.3841 8 1 3.7268 3.8998 -1.1061 9 1 1.5876 5.0369 -0.9926 10 1 2.6791 4.3014 1.0437 11 6 2.1389 -1.1673 0.0005 12 8 3.3523 -1.1688 -0.0819 13 6 1.4047 -2.4422 0.0948 14 6 1.9658 -3.6763 0.2693 15 7 0.9493 -4.5657 0.3026 16 6 1.0582 -5.9543 0.4645 17 6 2.3081 -6.5423 0.6053 18 6 2.4117 -7.9096 0.7703 19 6 1.2729 -8.6942 0.7839 20 6 0.0274 -8.1120 0.6383 21 6 -0.0830 -6.7444 0.4781 22 6 -1.4411 -6.1106 0.3200 23 9 -2.4268 -7.1022 0.3672 24 9 -1.6515 -5.1942 1.3560 25 9 -1.5058 -5.4470 -0.9099 26 7 -0.2352 -3.8328 0.1430 27 7 0.0698 -2.5871 0.0291 28 1 -0.3633 -0.8306 0.6051 29 1 -0.3633 0.9393 0.4168 30 1 -0.3633 -0.1086 -1.0219 31 1 -0.0510 3.0645 -1.4230 32 1 3.0187 -3.8977 0.3634 33 1 3.1981 -5.9308 0.5898 34 1 3.3834 -8.3671 0.8839 35 1 1.3568 -9.7637 0.9083 36 1 -0.8603 -8.7273 0.6489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -3.295007 kcal Electronic energy + Delta-G solvation = -29635.621119 eV Core-core repulsion = 24902.761625 eV Total energy + Delta-G solvation = -4732.859494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.03558 -47.62013 -47.37008 -42.15321 -39.82291 -38.08536 -34.83082 -34.62602 -32.59600 -31.68854 -30.64205 -29.97106 -26.47949 -26.21780 -25.01058 -24.14210 -23.11849 -21.79478 -21.60323 -19.81258 -18.76684 -18.32177 -18.19845 -17.79768 -16.84743 -16.07791 -15.91922 -15.60814 -15.43950 -15.25185 -14.68698 -14.37657 -14.35905 -14.14387 -13.96344 -13.84456 -13.82863 -13.70322 -13.57521 -13.25298 -13.10761 -12.73661 -12.17103 -11.94629 -11.82242 -11.60071 -11.45953 -11.28953 -11.16621 -10.97421 -10.52582 -10.38680 -9.96445 -9.81189 -9.28358 -8.99683 -8.69848 -8.62423 -7.69510 -6.34676 -3.92196 0.10673 0.51260 1.68731 1.94608 2.32013 2.60875 3.02252 3.20902 3.23211 3.26814 3.63460 3.85514 4.01583 4.13410 4.26550 4.41327 4.46746 4.46980 4.59002 4.74786 4.75864 4.89220 5.15590 5.16993 5.21315 5.26714 5.55264 5.60556 5.76650 5.80375 6.02564 6.21507 6.62105 6.89606 7.12840 7.45175 7.52409 8.06775 8.21048 8.46619 9.10386 9.34609 9.92203 10.64840 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.003109 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.457662 B = 9003.993306 C =10034.531867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.412 5.412 3 C -0.303 4.303 4 H 0.102 0.898 5 C 0.032 3.968 6 N -0.868 5.868 7 Si 0.934 3.066 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.272 1.272 11 C 0.502 3.498 12 O -0.593 6.593 13 C -0.041 4.041 14 C 0.064 3.936 15 N -0.340 5.340 16 C 0.207 3.793 17 C -0.136 4.136 18 C -0.062 4.062 19 C -0.129 4.129 20 C -0.052 4.052 21 C -0.186 4.186 22 C 0.517 3.483 23 F -0.184 7.184 24 F -0.162 7.162 25 F -0.161 7.161 26 N -0.068 5.068 27 N -0.183 5.183 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.271 0.729 32 H 0.204 0.796 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -22.725 4.187 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.126 5.126 3 C -0.431 4.431 4 H 0.120 0.880 5 C -0.173 4.173 6 N -0.506 5.506 7 Si 0.760 3.240 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.288 3.712 12 O -0.479 6.479 13 C -0.176 4.176 14 C -0.086 4.086 15 N -0.121 5.121 16 C 0.112 3.888 17 C -0.157 4.157 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.070 4.070 21 C -0.190 4.190 22 C 0.463 3.537 23 F -0.165 7.165 24 F -0.143 7.143 25 F -0.142 7.142 26 N -0.046 5.046 27 N -0.057 5.057 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.947 -22.454 3.943 22.880 hybrid contribution 1.000 0.873 -0.062 1.329 sum -0.947 -21.581 3.881 21.947 Atomic orbital electron populations 1.21949 0.79651 1.01138 1.01315 1.43521 1.06594 1.04172 1.58337 1.19723 1.00843 0.84059 1.38500 0.88050 1.25500 0.96255 1.00405 0.95109 1.70030 1.14717 1.30094 1.35756 0.85877 0.79166 0.80139 0.78807 1.19562 1.20772 1.19681 1.16517 0.86438 0.81210 0.86985 1.90621 1.12690 1.86009 1.58594 1.22187 0.88938 0.96373 1.10123 1.23224 0.95607 0.88416 1.01333 1.47673 1.08107 1.05248 1.51068 1.17248 0.94225 0.78962 0.98318 1.21050 0.95192 0.96236 1.03179 1.21263 0.99774 0.92233 0.94759 1.21270 0.91510 1.00981 1.01000 1.21001 0.99673 0.91743 0.94615 1.19837 0.91465 0.95392 1.12327 1.17805 0.84345 0.76245 0.75347 1.93140 1.65139 1.61901 1.96322 1.93260 1.95331 1.67454 1.58241 1.93267 1.96524 1.81228 1.43220 1.82203 1.02787 0.97767 1.21812 1.74985 1.13484 1.07792 1.09481 0.92872 0.90223 0.93035 0.91825 0.77959 0.83473 0.83753 0.84045 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.58 7.88 59.85 0.47 3.05 16 2 N -0.41 -11.17 3.01 -123.42 -0.37 -11.54 16 3 C -0.30 -8.54 9.23 -14.98 -0.14 -8.67 16 4 H 0.10 2.89 7.47 -52.49 -0.39 2.50 16 5 C 0.03 0.86 5.20 -17.46 -0.09 0.77 16 6 N -0.87 -23.50 10.45 55.50 0.58 -22.92 16 7 Si 0.93 20.63 29.56 -169.99 -5.02 15.61 16 8 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 C 0.50 12.95 7.61 -12.52 -0.10 12.86 16 12 O -0.59 -16.39 16.63 5.25 0.09 -16.31 16 13 C -0.04 -0.88 6.68 -83.55 -0.56 -1.43 16 14 C 0.06 1.10 10.62 -16.67 -0.18 0.92 16 15 N -0.34 -5.51 3.77 -10.40 -0.04 -5.54 16 16 C 0.21 2.57 6.59 -83.58 -0.55 2.02 16 17 C -0.14 -1.18 9.47 -39.40 -0.37 -1.55 16 18 C -0.06 -0.36 10.04 -39.61 -0.40 -0.76 16 19 C -0.13 -0.73 10.04 -39.55 -0.40 -1.12 16 20 C -0.05 -0.41 9.43 -39.61 -0.37 -0.78 16 21 C -0.19 -2.17 5.38 -104.45 -0.56 -2.73 16 22 C 0.52 7.18 2.78 36.00 0.10 7.28 16 23 F -0.18 -2.20 15.97 2.25 0.04 -2.17 16 24 F -0.16 -2.59 14.90 2.25 0.03 -2.56 16 25 F -0.16 -2.62 14.89 2.25 0.03 -2.58 16 26 N -0.07 -1.31 7.70 60.35 0.46 -0.85 16 27 N -0.18 -3.94 8.82 32.85 0.29 -3.65 16 28 H 0.05 1.24 5.31 -51.93 -0.28 0.97 16 29 H 0.08 2.05 6.45 -51.93 -0.33 1.72 16 30 H 0.05 1.34 7.94 -51.93 -0.41 0.93 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.20 2.69 7.13 -52.48 -0.37 2.32 16 33 H 0.15 1.04 6.82 -52.49 -0.36 0.69 16 34 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 35 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.15 0.89 7.16 -52.48 -0.38 0.51 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -33.72 320.68 -4.72 -38.44 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -2.50 Total: -0.60 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -3.14 Total: 9.84 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.92 Total: -44.51 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.31 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.10 Total: -7.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.72 -4.72 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.146 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds