Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36951 * 119.99890 * 2 1 4 4 H 1.07997 * 119.99543 * 155.14118 * 3 2 1 5 5 C 1.38993 * 120.00110 * 335.14021 * 3 2 1 6 6 N 1.31393 * 119.99987 * 355.19101 * 5 3 2 7 7 Si 1.86804 * 119.99736 * 175.19185 * 5 3 2 8 8 H 1.48499 * 109.47105 * 59.99899 * 7 5 3 9 9 H 1.48499 * 109.46905 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47091 * 299.99993 * 7 5 3 11 11 C 1.34779 * 119.99693 * 179.97438 * 2 1 3 12 12 O 1.21627 * 119.99359 * 175.51204 * 11 2 1 13 13 C 1.47424 * 120.00200 * 355.79141 * 11 2 1 14 14 C 1.36683 * 125.77413 * 188.49881 * 13 11 2 15 15 N 1.35104 * 106.78235 * 179.97438 * 14 13 11 16 16 C 1.40221 * 126.61129 * 179.97438 * 15 14 13 17 17 C 1.38851 * 120.06373 * 359.72810 * 16 15 14 18 18 C 1.38104 * 119.92791 * 179.72392 * 17 16 15 19 19 C 1.38295 * 120.07171 * 0.55102 * 18 17 16 20 20 C 1.38259 * 120.12580 * 359.72190 * 19 18 17 21 21 C 1.38139 * 120.07000 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.03718 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47123 * 359.97438 * 22 21 20 24 24 F 1.39900 * 109.47162 * 119.97810 * 22 21 20 25 25 F 1.39901 * 109.47576 * 239.97779 * 22 21 20 26 26 N 1.40208 * 106.77706 * 0.02562 * 15 14 13 27 27 N 1.28750 * 108.40409 * 359.72446 * 26 15 14 28 28 H 1.08995 * 109.47197 * 216.07272 * 1 2 3 29 29 H 1.08998 * 109.47126 * 336.07425 * 1 2 3 30 30 H 1.08999 * 109.46927 * 96.06888 * 1 2 3 31 31 H 0.97003 * 120.00162 * 179.97438 * 6 5 3 32 32 H 1.08005 * 126.61078 * 0.02562 * 14 13 11 33 33 H 1.07999 * 120.03814 * 359.97207 * 17 16 15 34 34 H 1.08002 * 119.96371 * 180.25052 * 18 17 16 35 35 H 1.07995 * 119.93800 * 179.70293 * 19 18 17 36 36 H 1.08004 * 119.96791 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1547 1.2293 0.3932 5 6 1.5514 2.3340 -0.5060 6 7 0.3668 2.2633 -1.0701 7 14 2.4314 3.9773 -0.3841 8 1 3.7268 3.8998 -1.1061 9 1 1.5876 5.0369 -0.9926 10 1 2.6791 4.3014 1.0437 11 6 2.1389 -1.1673 0.0005 12 8 3.3523 -1.1688 -0.0819 13 6 1.4047 -2.4422 0.0948 14 6 1.9658 -3.6763 0.2693 15 7 0.9493 -4.5657 0.3026 16 6 1.0582 -5.9543 0.4645 17 6 2.3081 -6.5423 0.6053 18 6 2.4117 -7.9096 0.7703 19 6 1.2729 -8.6942 0.7839 20 6 0.0274 -8.1120 0.6383 21 6 -0.0830 -6.7444 0.4781 22 6 -1.4411 -6.1106 0.3200 23 9 -2.4268 -7.1022 0.3672 24 9 -1.6515 -5.1942 1.3560 25 9 -1.5058 -5.4470 -0.9099 26 7 -0.2352 -3.8328 0.1430 27 7 0.0698 -2.5871 0.0291 28 1 -0.3633 -0.8306 0.6051 29 1 -0.3633 0.9393 0.4168 30 1 -0.3633 -0.1086 -1.0219 31 1 -0.0510 3.0645 -1.4230 32 1 3.0187 -3.8977 0.3634 33 1 3.1981 -5.9308 0.5898 34 1 3.3834 -8.3671 0.8839 35 1 1.3568 -9.7637 0.9083 36 1 -0.8603 -8.7273 0.6489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -25.039240 kcal Electronic energy + Delta-G solvation = -29636.564020 eV Core-core repulsion = 24902.761625 eV Total energy + Delta-G solvation = -4733.802395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.13461 -48.69392 -48.55433 -43.54717 -40.67487 -39.98160 -36.78641 -35.85667 -33.69391 -33.37017 -31.95850 -31.07105 -28.34107 -27.25344 -26.85192 -25.34897 -24.47993 -22.99697 -22.66619 -21.27283 -19.93146 -19.44848 -19.40886 -19.00779 -18.68828 -17.61233 -17.32684 -16.84112 -16.47323 -16.26729 -16.11590 -15.87548 -15.76675 -15.42799 -15.40913 -14.99789 -14.99209 -14.86143 -14.75083 -14.59956 -14.29708 -13.85354 -13.75229 -13.55007 -13.17407 -13.12775 -12.80889 -12.69645 -12.58555 -12.38692 -12.31253 -12.11675 -11.74478 -11.01107 -10.71352 -10.58035 -10.44182 -9.77699 -9.72132 -8.35445 -6.05410 -0.83435 -0.11825 0.59763 0.67920 0.78509 1.41952 1.47169 1.54809 1.63628 2.23673 2.34072 2.38473 2.65452 2.79194 2.93085 3.11997 3.22057 3.27765 3.37860 3.67968 3.82455 3.89879 4.03959 4.08167 4.20478 4.32225 4.47237 4.62709 4.90136 4.98097 5.09689 5.12910 5.23322 5.34147 5.37378 5.42554 5.67704 6.02484 6.36916 6.76455 7.05256 7.32835 7.89175 8.64252 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.003109 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.457662 B = 9003.993306 C =10034.531867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.435 5.435 3 C -0.345 4.345 4 H 0.087 0.913 5 C -0.006 4.006 6 N -0.894 5.894 7 Si 1.004 2.996 8 H -0.270 1.270 9 H -0.271 1.271 10 H -0.262 1.262 11 C 0.505 3.495 12 O -0.618 6.618 13 C -0.082 4.082 14 C 0.099 3.901 15 N -0.322 5.322 16 C 0.152 3.848 17 C -0.127 4.127 18 C -0.049 4.049 19 C -0.101 4.101 20 C -0.055 4.055 21 C -0.199 4.199 22 C 0.508 3.492 23 F -0.175 7.175 24 F -0.181 7.181 25 F -0.182 7.182 26 N -0.083 5.083 27 N -0.214 5.214 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.276 0.724 32 H 0.243 0.757 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -26.331 4.898 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.150 5.150 3 C -0.473 4.473 4 H 0.105 0.895 5 C -0.208 4.208 6 N -0.531 5.531 7 Si 0.825 3.175 8 H -0.195 1.195 9 H -0.195 1.195 10 H -0.187 1.187 11 C 0.293 3.707 12 O -0.506 6.506 13 C -0.220 4.220 14 C -0.053 4.053 15 N -0.101 5.101 16 C 0.060 3.940 17 C -0.148 4.148 18 C -0.067 4.067 19 C -0.119 4.119 20 C -0.073 4.073 21 C -0.202 4.202 22 C 0.453 3.547 23 F -0.156 7.156 24 F -0.162 7.162 25 F -0.163 7.163 26 N -0.060 5.060 27 N -0.088 5.088 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.259 0.741 33 H 0.182 0.818 34 H 0.206 0.794 35 H 0.203 0.797 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.181 -26.134 4.662 26.547 hybrid contribution 0.461 1.505 -0.247 1.593 sum 0.280 -24.629 4.416 25.023 Atomic orbital electron populations 1.21670 0.79052 1.00787 1.00124 1.43710 1.07072 1.04596 1.59625 1.19826 1.00979 0.85535 1.40934 0.89508 1.26393 0.96879 1.03549 0.93972 1.70129 1.15767 1.31243 1.35998 0.84853 0.77862 0.75529 0.79213 1.19539 1.19507 1.18656 1.17005 0.86412 0.82253 0.85075 1.90562 1.13830 1.86953 1.59262 1.21712 0.89516 0.96114 1.14633 1.23642 0.97042 0.86885 0.97732 1.47811 1.06778 1.06880 1.48675 1.17785 0.96305 0.76856 1.03006 1.21456 0.93975 0.97868 1.01500 1.21827 1.01884 0.90739 0.92268 1.21863 0.90068 1.03086 0.96916 1.21361 1.01842 0.90060 0.94054 1.19883 0.89522 0.96873 1.13961 1.18250 0.86118 0.76123 0.74174 1.93143 1.65097 1.61164 1.96201 1.93216 1.95596 1.68424 1.58950 1.93220 1.96739 1.81860 1.44466 1.82111 1.04199 0.97127 1.22576 1.74871 1.13746 1.09278 1.10891 0.91498 0.91645 0.94993 0.91381 0.74140 0.81798 0.79440 0.79685 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.77 7.88 127.77 1.01 7.78 16 2 N -0.43 -24.84 3.01 -662.63 -2.00 -26.84 16 3 C -0.34 -20.35 9.23 84.07 0.78 -19.57 16 4 H 0.09 5.21 7.47 -2.91 -0.02 5.19 16 5 C -0.01 -0.30 5.20 84.94 0.44 0.14 16 6 N -0.89 -50.08 10.45 21.67 0.23 -49.85 16 7 Si 1.00 43.08 29.56 68.60 2.03 45.10 16 8 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 C 0.50 27.13 7.61 86.66 0.66 27.79 16 12 O -0.62 -35.20 16.63 -4.12 -0.07 -35.27 16 13 C -0.08 -3.67 6.68 40.80 0.27 -3.40 16 14 C 0.10 3.31 10.62 83.83 0.89 4.20 16 15 N -0.32 -10.25 3.77 -186.82 -0.71 -10.95 16 16 C 0.15 3.48 6.59 38.08 0.25 3.73 16 17 C -0.13 -1.67 9.47 22.38 0.21 -1.46 16 18 C -0.05 -0.27 10.04 22.25 0.22 -0.04 16 19 C -0.10 -0.51 10.04 22.29 0.22 -0.29 16 20 C -0.05 -0.65 9.43 22.25 0.21 -0.44 16 21 C -0.20 -4.29 5.38 -19.75 -0.11 -4.39 16 22 C 0.51 14.16 2.78 71.24 0.20 14.36 16 23 F -0.17 -4.11 15.97 44.97 0.72 -3.39 16 24 F -0.18 -5.98 14.90 44.97 0.67 -5.31 16 25 F -0.18 -6.10 14.89 44.97 0.67 -5.43 16 26 N -0.08 -3.27 7.70 37.02 0.28 -2.99 16 27 N -0.21 -9.66 8.82 -50.00 -0.44 -10.10 16 28 H 0.07 3.34 5.31 -2.39 -0.01 3.32 16 29 H 0.06 3.58 6.45 -2.39 -0.02 3.56 16 30 H 0.03 1.77 7.94 -2.39 -0.02 1.75 16 31 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.24 5.81 7.13 -2.91 -0.02 5.79 16 33 H 0.16 1.55 6.82 -2.91 -0.02 1.53 16 34 H 0.19 -0.45 8.06 -2.91 -0.02 -0.47 16 35 H 0.19 -0.53 8.06 -2.91 -0.02 -0.55 16 36 H 0.17 1.34 7.16 -2.91 -0.02 1.32 16 Total: -1.00 -80.53 320.68 7.82 -72.71 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.17 Total: 3.93 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.26 Total: 28.40 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -2.63 Total: -100.73 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.07 Total: -35.27 kcal Atomic # 9 Polarization: -16.19 SS G_CDS: 2.06 Total: -14.13 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -80.53 7.82 -72.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.669 kcal (2) G-P(sol) polarization free energy of solvation -80.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds