Wall clock time and date at job start Sat Apr 11 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46503 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00282 * 293.75934 * 4 3 2 6 6 H 1.08001 * 120.00134 * 149.38613 * 5 4 3 7 7 C 1.38815 * 120.00116 * 329.39054 * 5 4 3 8 8 N 1.31621 * 119.99673 * 337.57766 * 7 5 4 9 9 Si 1.86791 * 120.00515 * 157.57774 * 7 5 4 10 10 H 1.48502 * 109.46923 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47226 * 119.99635 * 9 7 5 12 12 H 1.48498 * 109.47615 * 240.00423 * 9 7 5 13 13 S 1.65597 * 120.00004 * 113.76316 * 4 3 2 14 14 O 1.42105 * 106.40282 * 336.45841 * 13 4 3 15 15 O 1.42102 * 106.40308 * 203.53943 * 13 4 3 16 16 C 1.76205 * 107.22023 * 89.99796 * 13 4 3 17 17 C 1.38410 * 119.84253 * 90.00392 * 16 13 4 18 18 C 1.38123 * 120.18283 * 179.97438 * 17 16 13 19 19 C 1.38612 * 119.82709 * 0.02562 * 18 17 16 20 20 C 1.39464 * 120.03288 * 359.97438 * 19 18 17 21 21 C 1.38118 * 119.84074 * 270.24097 * 16 13 4 22 22 O 1.35559 * 107.27490 * 180.02562 * 20 19 18 23 23 C 1.34220 * 109.17947 * 359.97438 * 22 20 19 24 24 O 1.21599 * 125.27569 * 179.97438 * 23 22 20 25 25 N 1.34780 * 109.45452 * 0.02562 * 23 22 20 26 26 C 1.46500 * 126.25776 * 180.02562 * 25 23 22 27 27 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47691 * 299.99846 * 1 2 3 29 29 H 1.09001 * 109.47235 * 60.00307 * 1 2 3 30 30 H 1.08997 * 109.47691 * 240.00154 * 2 1 3 31 31 H 1.09001 * 109.47235 * 119.99693 * 2 1 3 32 32 H 1.09004 * 109.47445 * 59.99896 * 3 2 1 33 33 H 1.09000 * 109.47699 * 299.99886 * 3 2 1 34 34 H 0.96997 * 119.99994 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.91022 * 359.97438 * 17 16 13 36 36 H 1.08006 * 120.08690 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.04473 * 359.75932 * 21 16 13 38 38 H 1.09000 * 109.47271 * 269.95611 * 26 25 23 39 39 H 1.09000 * 109.46741 * 29.95735 * 26 25 23 40 40 H 1.09001 * 109.46654 * 149.95503 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 0.9650 1.0863 6 1 5.1563 0.5028 0.9545 7 6 3.6397 1.0748 2.3564 8 7 2.7221 1.9864 2.5998 9 14 4.2025 -0.0712 3.7199 10 1 5.2356 -0.9983 3.1923 11 1 4.7767 0.7276 4.8323 12 1 3.0433 -0.8535 4.2191 13 16 4.3334 2.0203 -1.3116 14 8 3.4522 1.9136 -2.4214 15 8 5.6164 1.4103 -1.2766 16 6 4.5940 3.7428 -1.0471 17 6 5.7354 4.1743 -0.3939 18 6 5.9470 5.5229 -0.1832 19 6 5.0124 6.4451 -0.6274 20 6 3.8620 6.0112 -1.2857 21 6 3.6559 4.6555 -1.4882 22 8 3.1394 7.1136 -1.6022 23 6 3.7890 8.2058 -1.1700 24 8 3.4016 9.3509 -1.3008 25 7 4.9377 7.8365 -0.5695 26 6 5.9266 8.7329 0.0345 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.3378 2.0629 3.4871 35 1 6.4626 3.4546 -0.0479 36 1 6.8381 5.8579 0.3271 37 1 2.7669 4.3139 -1.9974 38 1 6.6637 9.0191 -0.7158 39 1 5.4262 9.6250 0.4111 40 1 6.4257 8.2214 0.8575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180076186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:44 Heat of formation + Delta-G solvation = -82.616638 kcal Electronic energy + Delta-G solvation = -28182.467394 eV Core-core repulsion = 24091.176196 eV Total energy + Delta-G solvation = -4091.291197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.17781 -38.45293 -37.34920 -36.50379 -35.92488 -35.88203 -34.49611 -32.70773 -31.23270 -30.62720 -29.82165 -27.89495 -26.13420 -23.96258 -23.40318 -22.91697 -21.73554 -20.64327 -19.12940 -18.30030 -17.78088 -17.46703 -17.12382 -16.69762 -16.38490 -15.44653 -15.14036 -14.89594 -14.65445 -14.31216 -14.23945 -13.97676 -13.88164 -13.39858 -13.27868 -13.15728 -12.85444 -12.66255 -12.14584 -11.96916 -11.93462 -11.63295 -11.34470 -11.16930 -11.08234 -11.06192 -10.78508 -10.74691 -10.67067 -10.63825 -10.49674 -10.16894 -10.00998 -9.73657 -9.50406 -8.67676 -8.23673 -8.02074 -6.69283 -4.25447 0.97060 1.29205 1.64319 2.06054 2.44639 2.89578 2.98821 3.08008 3.14317 3.53992 3.86340 4.34923 4.38000 4.44729 4.59427 4.95290 4.97922 5.01083 5.19018 5.25388 5.34766 5.51210 5.66941 5.76062 5.78351 5.84311 5.93987 6.00931 6.18695 6.22540 6.26767 6.49574 6.52841 6.57320 6.67409 6.72296 6.85102 7.06411 7.24304 7.25425 7.45472 7.59414 8.13692 8.51240 8.98557 10.18429 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.004126 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.517785 B = 6784.791807 C = 7235.293291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.112 3.888 4 N -0.793 5.793 5 C -0.233 4.233 6 H 0.116 0.884 7 C 0.038 3.962 8 N -0.814 5.814 9 Si 0.922 3.078 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.274 1.274 13 S 2.515 3.485 14 O -0.999 6.999 15 O -0.982 6.982 16 C -0.635 4.635 17 C -0.002 4.002 18 C -0.125 4.125 19 C 0.092 3.908 20 C 0.007 3.993 21 C 0.012 3.988 22 O -0.235 6.235 23 C 0.634 3.366 24 O -0.497 6.497 25 N -0.551 5.551 26 C 0.101 3.899 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.277 0.723 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 4.218 1.187 5.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.014 4.014 4 N -0.616 5.616 5 C -0.384 4.384 6 H 0.134 0.866 7 C -0.177 4.177 8 N -0.451 5.451 9 Si 0.747 3.253 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.200 1.200 13 S 2.614 3.386 14 O -0.989 6.989 15 O -0.971 6.971 16 C -0.712 4.712 17 C -0.022 4.022 18 C -0.146 4.146 19 C -0.006 4.006 20 C -0.039 4.039 21 C -0.008 4.008 22 O -0.140 6.140 23 C 0.390 3.610 24 O -0.382 6.382 25 N -0.283 5.283 26 C -0.039 4.039 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.169 0.831 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.878 4.817 0.093 5.612 hybrid contribution 0.272 0.723 1.122 1.362 sum 3.150 5.541 1.215 6.488 Atomic orbital electron populations 1.21699 0.96683 1.00662 1.01402 1.21644 0.94168 0.98197 1.02086 1.21590 0.79389 0.96970 1.03413 1.54102 1.12421 1.60359 1.34669 1.20007 1.06134 1.27445 0.84798 0.86643 1.25829 0.96730 0.96341 0.98785 1.69914 1.24459 1.27945 1.22830 0.85911 0.79433 0.80182 0.79810 1.18270 1.20288 1.19957 1.12449 0.74102 0.74030 0.77989 1.93347 1.65218 1.86385 1.53959 1.93348 1.41710 1.74398 1.87666 1.32620 1.00003 1.30368 1.08188 1.20774 0.95220 0.94339 0.91839 1.20167 0.98804 0.91726 1.03900 1.18636 0.97626 0.83017 1.01354 1.19129 0.91425 0.88383 1.04989 1.19724 0.99134 0.86129 0.95765 1.84966 1.45062 1.14287 1.69683 1.18547 0.79414 0.84505 0.78555 1.91117 1.71099 1.13895 1.62091 1.45730 1.21868 1.05638 1.55095 1.21786 0.90321 0.93287 0.98479 0.93480 0.92848 0.93190 0.92873 0.91285 0.87596 0.92206 0.91229 0.83122 0.84789 0.83434 0.90898 0.89215 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.15 0.37 -1.85 16 2 C -0.12 -2.22 5.98 -26.73 -0.16 -2.38 16 3 C 0.11 2.28 5.12 -4.04 -0.02 2.26 16 4 N -0.79 -17.22 2.98 -59.90 -0.18 -17.40 16 5 C -0.23 -5.14 8.67 -15.06 -0.13 -5.27 16 6 H 0.12 2.55 7.34 -52.49 -0.39 2.17 16 7 C 0.04 0.81 4.63 -17.43 -0.08 0.73 16 8 N -0.81 -17.78 11.06 55.49 0.61 -17.17 16 9 Si 0.92 16.76 29.61 -169.99 -5.03 11.73 16 10 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 11 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 12 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 13 S 2.51 54.66 5.62 -107.50 -0.60 54.06 16 14 O -1.00 -23.18 15.91 -57.17 -0.91 -24.09 16 15 O -0.98 -23.10 16.12 -57.17 -0.92 -24.02 16 16 C -0.64 -12.37 5.97 -39.56 -0.24 -12.60 16 17 C 0.00 -0.03 9.51 -39.56 -0.38 -0.41 16 18 C -0.12 -1.85 10.03 -39.49 -0.40 -2.25 16 19 C 0.09 1.47 6.84 -83.79 -0.57 0.90 16 20 C 0.01 0.13 7.35 -38.98 -0.29 -0.16 16 21 C 0.01 0.23 9.53 -39.49 -0.38 -0.15 16 22 O -0.23 -4.28 10.72 -21.96 -0.24 -4.52 16 23 C 0.63 10.96 9.07 54.06 0.49 11.45 16 24 O -0.50 -9.35 17.81 -19.00 -0.34 -9.69 16 25 N -0.55 -8.01 3.21 -126.43 -0.41 -8.42 16 26 C 0.10 0.96 11.07 59.85 0.66 1.62 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.31 7.41 -51.93 -0.38 0.92 16 32 H 0.11 2.25 5.52 -51.93 -0.29 1.97 16 33 H 0.06 1.17 7.04 -51.93 -0.37 0.80 16 34 H 0.28 5.68 8.31 -40.82 -0.34 5.34 16 35 H 0.15 2.46 7.60 -52.49 -0.40 2.06 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.15 2.63 7.61 -52.49 -0.40 2.23 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.79 8.06 -51.93 -0.42 0.38 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -28.57 353.86 -8.53 -37.10 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.73 Total: 5.18 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.12 Total: -8.11 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.03 Total: -42.98 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -2.41 Total: -62.32 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.60 Total: 54.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.57 -8.53 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180076186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.512 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds