Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 N 1.46503 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00282 * 293.75934 * 4 3 2 6 6 H 1.08001 * 120.00134 * 149.38613 * 5 4 3 7 7 C 1.38815 * 120.00116 * 329.39054 * 5 4 3 8 8 N 1.31621 * 119.99673 * 337.57766 * 7 5 4 9 9 Si 1.86791 * 120.00515 * 157.57774 * 7 5 4 10 10 H 1.48502 * 109.46923 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47226 * 119.99635 * 9 7 5 12 12 H 1.48498 * 109.47615 * 240.00423 * 9 7 5 13 13 S 1.65597 * 120.00004 * 113.76316 * 4 3 2 14 14 O 1.42105 * 106.40282 * 336.45841 * 13 4 3 15 15 O 1.42102 * 106.40308 * 203.53943 * 13 4 3 16 16 C 1.76205 * 107.22023 * 89.99796 * 13 4 3 17 17 C 1.38410 * 119.84253 * 90.00392 * 16 13 4 18 18 C 1.38123 * 120.18283 * 179.97438 * 17 16 13 19 19 C 1.38612 * 119.82709 * 0.02562 * 18 17 16 20 20 C 1.39464 * 120.03288 * 359.97438 * 19 18 17 21 21 C 1.38118 * 119.84074 * 270.24097 * 16 13 4 22 22 O 1.35559 * 107.27490 * 180.02562 * 20 19 18 23 23 C 1.34220 * 109.17947 * 359.97438 * 22 20 19 24 24 O 1.21599 * 125.27569 * 179.97438 * 23 22 20 25 25 N 1.34780 * 109.45452 * 0.02562 * 23 22 20 26 26 C 1.46500 * 126.25776 * 180.02562 * 25 23 22 27 27 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47691 * 299.99846 * 1 2 3 29 29 H 1.09001 * 109.47235 * 60.00307 * 1 2 3 30 30 H 1.08997 * 109.47691 * 240.00154 * 2 1 3 31 31 H 1.09001 * 109.47235 * 119.99693 * 2 1 3 32 32 H 1.09004 * 109.47445 * 59.99896 * 3 2 1 33 33 H 1.09000 * 109.47699 * 299.99886 * 3 2 1 34 34 H 0.96997 * 119.99994 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.91022 * 359.97438 * 17 16 13 36 36 H 1.08006 * 120.08690 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.04473 * 359.75932 * 21 16 13 38 38 H 1.09000 * 109.47271 * 269.95611 * 26 25 23 39 39 H 1.09000 * 109.46741 * 29.95735 * 26 25 23 40 40 H 1.09001 * 109.46654 * 149.95503 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 0.9650 1.0863 6 1 5.1563 0.5028 0.9545 7 6 3.6397 1.0748 2.3564 8 7 2.7221 1.9864 2.5998 9 14 4.2025 -0.0712 3.7199 10 1 5.2356 -0.9983 3.1923 11 1 4.7767 0.7276 4.8323 12 1 3.0433 -0.8535 4.2191 13 16 4.3334 2.0203 -1.3116 14 8 3.4522 1.9136 -2.4214 15 8 5.6164 1.4103 -1.2766 16 6 4.5940 3.7428 -1.0471 17 6 5.7354 4.1743 -0.3939 18 6 5.9470 5.5229 -0.1832 19 6 5.0124 6.4451 -0.6274 20 6 3.8620 6.0112 -1.2857 21 6 3.6559 4.6555 -1.4882 22 8 3.1394 7.1136 -1.6022 23 6 3.7890 8.2058 -1.1700 24 8 3.4016 9.3509 -1.3008 25 7 4.9377 7.8365 -0.5695 26 6 5.9266 8.7329 0.0345 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.3378 2.0629 3.4871 35 1 6.4626 3.4546 -0.0479 36 1 6.8381 5.8579 0.3271 37 1 2.7669 4.3139 -1.9974 38 1 6.6637 9.0191 -0.7158 39 1 5.4262 9.6250 0.4111 40 1 6.4257 8.2214 0.8575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180076186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -99.779316 kcal Electronic energy + Delta-G solvation = -28183.211623 eV Core-core repulsion = 24091.176196 eV Total energy + Delta-G solvation = -4092.035427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.50552 -39.82323 -38.69793 -38.11317 -37.70831 -37.13704 -36.29853 -34.23435 -32.80794 -31.96183 -31.08163 -28.93929 -27.69911 -25.51808 -24.76849 -24.29175 -22.94462 -22.13723 -20.62463 -19.86613 -19.07708 -18.78800 -18.73236 -18.25721 -17.98361 -16.89765 -16.58690 -16.37349 -16.12647 -15.67942 -15.41511 -15.27754 -15.21782 -15.01867 -14.66030 -14.49136 -14.23221 -13.56041 -13.53856 -13.45037 -13.29858 -13.16525 -12.85880 -12.74814 -12.60680 -12.53423 -12.43450 -12.24230 -12.16983 -12.00906 -11.91452 -11.70194 -11.58371 -11.27069 -11.10375 -10.00338 -9.73135 -9.49879 -8.31190 -5.95154 -0.43486 -0.06871 -0.01096 0.86798 1.11016 1.54298 1.56266 1.60939 1.71895 2.14238 2.35330 2.73438 2.95419 3.09094 3.29624 3.36222 3.74440 3.79561 4.09097 4.27878 4.31818 4.34543 4.36282 4.43823 4.46630 4.61875 4.63219 4.66894 4.73947 4.90992 4.99174 5.10960 5.13371 5.18192 5.31565 5.32997 5.34294 5.47346 5.72321 5.83364 5.91440 6.30622 6.47289 6.85679 7.32654 8.57575 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.004126 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.517785 B = 6784.791807 C = 7235.293291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.110 3.890 4 N -0.801 5.801 5 C -0.253 4.253 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.834 5.834 9 Si 0.977 3.023 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.272 1.272 13 S 2.524 3.476 14 O -1.022 7.022 15 O -1.004 7.004 16 C -0.654 4.654 17 C -0.012 4.012 18 C -0.104 4.104 19 C 0.101 3.899 20 C -0.011 4.011 21 C 0.000 4.000 22 O -0.250 6.250 23 C 0.627 3.373 24 O -0.518 6.518 25 N -0.537 5.537 26 C 0.087 3.913 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.282 0.718 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.339 4.915 2.701 7.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.015 4.015 4 N -0.624 5.624 5 C -0.403 4.403 6 H 0.126 0.874 7 C -0.197 4.197 8 N -0.472 5.472 9 Si 0.799 3.201 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.197 1.197 13 S 2.627 3.373 14 O -1.012 7.012 15 O -0.994 6.994 16 C -0.735 4.735 17 C -0.032 4.032 18 C -0.124 4.124 19 C 0.002 3.998 20 C -0.058 4.058 21 C -0.020 4.020 22 O -0.156 6.156 23 C 0.383 3.617 24 O -0.404 6.404 25 N -0.269 5.269 26 C -0.050 4.050 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.201 0.799 37 H 0.161 0.839 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.140 5.493 1.612 7.065 hybrid contribution -0.085 0.644 0.615 0.895 sum 4.055 6.137 2.227 7.686 Atomic orbital electron populations 1.21660 0.94187 1.02201 1.01806 1.21634 0.96372 0.96648 1.01321 1.21661 0.78858 0.98202 1.02826 1.54058 1.12818 1.60974 1.34547 1.20077 1.06392 1.28478 0.85393 0.87352 1.26386 0.96467 0.96974 0.99907 1.69968 1.24972 1.28745 1.23481 0.85099 0.78996 0.78549 0.77419 1.18270 1.19940 1.19688 1.11848 0.73389 0.74491 0.77558 1.93304 1.65732 1.87123 1.55028 1.93303 1.42644 1.75533 1.87942 1.32203 1.01758 1.29095 1.10396 1.21017 0.94602 0.95969 0.91591 1.20539 0.99588 0.90111 1.02199 1.18808 0.96857 0.83916 1.00234 1.19196 0.92564 0.88096 1.05935 1.19674 0.99169 0.86786 0.96388 1.84916 1.45878 1.14757 1.70004 1.18687 0.80094 0.84031 0.78874 1.91095 1.71749 1.14490 1.63070 1.45951 1.21542 1.05367 1.53993 1.22301 0.89744 0.93049 0.99918 0.91377 0.92684 0.92549 0.93467 0.92135 0.88503 0.92318 0.90769 0.82264 0.79872 0.83864 0.88721 0.88620 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.12 -4.42 5.98 30.59 0.18 -4.23 16 3 C 0.11 4.57 5.12 86.38 0.44 5.01 16 4 N -0.80 -35.52 2.98 -343.44 -1.02 -36.54 16 5 C -0.25 -11.27 8.67 84.03 0.73 -10.54 16 6 H 0.11 4.87 7.34 -2.91 -0.02 4.85 16 7 C 0.02 0.68 4.63 84.86 0.39 1.07 16 8 N -0.83 -36.21 11.06 21.65 0.24 -35.97 16 9 Si 0.98 33.57 29.61 68.60 2.03 35.60 16 10 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 11 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 12 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 13 S 2.52 112.39 5.62 -56.49 -0.32 112.07 16 14 O -1.02 -48.94 15.91 -128.00 -2.04 -50.98 16 15 O -1.00 -48.11 16.12 -128.00 -2.06 -50.18 16 16 C -0.65 -25.63 5.97 22.28 0.13 -25.50 16 17 C -0.01 -0.40 9.51 22.28 0.21 -0.18 16 18 C -0.10 -2.73 10.03 22.33 0.22 -2.51 16 19 C 0.10 3.00 6.84 38.31 0.26 3.26 16 20 C -0.01 -0.41 7.35 22.66 0.17 -0.24 16 21 C 0.00 -0.01 9.53 22.33 0.21 0.20 16 22 O -0.25 -9.14 10.72 8.62 0.09 -9.05 16 23 C 0.63 21.06 9.07 129.79 1.18 22.23 16 24 O -0.52 -19.08 17.81 19.19 0.34 -18.74 16 25 N -0.54 -14.20 3.21 -784.52 -2.52 -16.71 16 26 C 0.09 1.31 11.07 127.77 1.41 2.72 16 27 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.30 7.41 -2.39 -0.02 2.28 16 32 H 0.10 4.20 5.52 -2.38 -0.01 4.19 16 33 H 0.06 2.38 7.04 -2.39 -0.02 2.36 16 34 H 0.28 11.38 8.31 -92.71 -0.77 10.61 16 35 H 0.16 4.97 7.60 -2.91 -0.02 4.95 16 36 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.14 5.38 7.61 -2.91 -0.02 5.36 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.38 8.06 -2.39 -0.02 1.36 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -62.23 353.86 2.09 -60.14 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.08 Total: 22.48 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 6.26 Total: -12.13 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -3.30 Total: -89.23 kcal Atomic # 8 Polarization: -125.28 SS G_CDS: -3.67 Total: -128.94 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Atomic # 16 Polarization: 112.39 SS G_CDS: -0.32 Total: 112.07 kcal Total: -62.23 2.09 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180076186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.641 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds