Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47221 * 2 1 4 4 C 1.46491 * 119.99896 * 274.99971 * 3 2 1 5 5 C 1.50701 * 109.47207 * 274.99651 * 4 3 2 6 6 H 1.08002 * 119.99838 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99800 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00105 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 89.99708 * 9 7 5 11 11 H 1.48504 * 109.47276 * 209.99884 * 9 7 5 12 12 H 1.48504 * 109.47201 * 329.99675 * 9 7 5 13 13 S 1.65603 * 119.99994 * 94.99631 * 3 2 1 14 14 O 1.42101 * 106.40171 * 336.46432 * 13 3 2 15 15 O 1.42095 * 106.40405 * 203.54117 * 13 3 2 16 16 C 1.76200 * 107.21722 * 89.99886 * 13 3 2 17 17 C 1.38416 * 119.84037 * 89.99987 * 16 13 3 18 18 C 1.38125 * 120.18678 * 180.02562 * 17 16 13 19 19 C 1.38616 * 119.82449 * 359.97438 * 18 17 16 20 20 C 1.39465 * 120.03184 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.84836 * 270.24256 * 16 13 3 22 22 O 1.35561 * 107.27829 * 179.97438 * 20 19 18 23 23 C 1.34225 * 109.17259 * 359.97438 * 22 20 19 24 24 O 1.21607 * 125.27001 * 179.97438 * 23 22 20 25 25 N 1.34776 * 109.45808 * 359.97438 * 23 22 20 26 26 C 1.46497 * 126.25758 * 180.02562 * 25 23 22 27 27 H 1.09003 * 109.46876 * 60.00257 * 1 2 3 28 28 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47310 * 299.99934 * 1 2 3 30 30 H 1.09002 * 109.47310 * 240.00066 * 2 1 3 31 31 H 1.09003 * 109.46876 * 119.99743 * 2 1 3 32 32 H 1.08996 * 109.47627 * 34.99636 * 4 3 2 33 33 H 1.09005 * 109.47096 * 155.00012 * 4 3 2 34 34 H 0.97006 * 119.99895 * 180.02562 * 8 7 5 35 35 H 1.07999 * 119.90984 * 359.97438 * 17 16 13 36 36 H 1.08000 * 120.09382 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.03752 * 359.75880 * 21 16 13 38 38 H 1.08995 * 109.47635 * 269.96258 * 26 25 23 39 39 H 1.08997 * 109.47097 * 29.97150 * 26 25 23 40 40 H 1.09004 * 109.46857 * 149.96271 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1086 -1.2638 5 6 3.4948 1.7888 -1.8822 6 1 4.1721 1.1111 -1.3838 7 6 3.8526 2.3606 -3.0848 8 7 5.0192 2.0818 -3.6242 9 14 2.6809 3.5322 -3.9472 10 1 2.9452 4.9207 -3.4921 11 1 2.8853 3.4451 -5.4155 12 1 1.2805 3.1620 -3.6196 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1999 16 6 4.1169 1.7941 1.7321 17 6 5.0806 2.6643 1.2527 18 6 6.4191 2.4153 1.4859 19 6 6.7963 1.2904 2.2027 20 6 5.8260 0.4130 2.6862 21 6 4.4856 0.6686 2.4429 22 8 6.4735 -0.5831 3.3392 23 6 7.7960 -0.3618 3.2806 24 8 8.6498 -1.0750 3.7717 25 7 8.0313 0.7734 2.5933 26 6 9.3442 1.3580 2.3092 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3619 1.8097 -1.9453 33 1 2.0922 3.1803 -1.0755 34 1 5.2711 2.4843 -4.4701 35 1 4.7853 3.5401 0.6939 36 1 7.1698 3.0951 1.1107 37 1 3.7300 -0.0074 2.8149 38 1 9.6184 2.0428 3.1116 39 1 10.0878 0.5642 2.2389 40 1 9.3032 1.9019 1.3655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264058916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -97.739180 kcal Electronic energy + Delta-G solvation = -28235.852341 eV Core-core repulsion = 24143.905381 eV Total energy + Delta-G solvation = -4091.946960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56954 -39.93218 -38.77358 -38.34707 -37.74056 -37.23033 -36.89615 -34.59329 -32.11640 -31.76325 -31.24251 -29.03179 -28.88175 -24.92835 -24.56578 -24.44489 -23.11186 -23.00127 -20.73040 -19.39675 -19.12890 -18.93254 -18.82461 -18.43874 -18.22593 -17.22197 -16.94035 -16.39023 -16.14029 -15.90109 -15.40376 -15.33242 -15.29377 -14.84820 -14.65241 -14.61521 -14.43420 -14.08424 -13.66490 -13.56616 -13.48924 -13.39390 -13.19107 -13.05639 -12.78598 -12.71756 -12.54729 -12.52061 -12.22563 -12.07157 -12.00867 -11.95590 -11.62652 -11.52711 -10.69024 -10.08616 -9.80788 -9.60056 -8.20961 -6.24871 -0.71694 -0.43860 -0.14185 0.80190 1.08043 1.44680 1.48519 1.49952 1.54750 1.87968 2.22954 2.42045 2.75713 3.00421 3.14511 3.22976 3.39561 3.67982 3.90811 3.98299 4.05413 4.25575 4.34021 4.38460 4.47962 4.52272 4.61135 4.63438 4.77101 4.77695 4.84371 4.96799 5.02359 5.07014 5.12107 5.22976 5.47558 5.49022 5.54551 5.82559 5.83683 6.26334 6.37763 6.81176 7.39729 8.93664 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004654 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.565524 B = 6015.051070 C = 7353.150418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.978 5.978 4 C 0.216 3.784 5 C -0.532 4.532 6 H 0.053 0.947 7 C 0.027 3.973 8 N -0.937 5.937 9 Si 0.918 3.082 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.242 1.242 13 S 2.706 3.294 14 O -0.970 6.970 15 O -0.977 6.977 16 C -0.668 4.668 17 C 0.011 3.989 18 C -0.109 4.109 19 C 0.119 3.881 20 C -0.010 4.010 21 C 0.021 3.979 22 O -0.242 6.242 23 C 0.631 3.369 24 O -0.513 6.513 25 N -0.539 5.539 26 C 0.085 3.915 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 0.616 9.194 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.817 5.817 4 C 0.092 3.908 5 C -0.572 4.572 6 H 0.072 0.928 7 C -0.172 4.172 8 N -0.577 5.577 9 Si 0.742 3.258 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.165 1.165 13 S 2.796 3.204 14 O -0.960 6.960 15 O -0.967 6.967 16 C -0.754 4.754 17 C -0.009 4.009 18 C -0.131 4.131 19 C 0.019 3.981 20 C -0.057 4.057 21 C 0.002 3.998 22 O -0.147 6.147 23 C 0.387 3.613 24 O -0.399 6.399 25 N -0.270 5.270 26 C -0.052 4.052 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.188 0.812 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.883 0.514 9.968 10.020 hybrid contribution 0.861 0.000 -0.919 1.259 sum 1.744 0.514 9.049 9.230 Atomic orbital electron populations 1.22211 0.94938 1.03502 1.02103 1.21399 0.95235 0.80789 1.03713 1.57187 1.78309 1.24492 1.21669 1.19468 0.96741 0.92599 0.82028 1.21615 1.01771 1.27721 1.06047 0.92842 1.25542 0.96205 0.97706 0.97731 1.70020 1.22544 1.45573 1.19551 0.86153 0.81477 0.80346 0.77838 1.19231 1.21460 1.16504 1.01450 0.73479 0.73046 0.72446 1.93530 1.70025 1.75677 1.56805 1.93518 1.86427 1.31178 1.85627 1.30972 1.26757 1.04605 1.13115 1.20986 0.91529 0.97198 0.91220 1.20445 0.97185 0.95864 0.99560 1.18900 0.84320 0.96555 0.98332 1.19045 0.94395 0.89532 1.02704 1.19761 0.91943 0.94929 0.93216 1.84939 1.19065 1.44581 1.66142 1.18639 0.81001 0.81761 0.79947 1.91119 1.43545 1.52285 1.52919 1.46028 1.08138 1.22718 1.50107 1.22311 0.77745 1.00370 1.04789 0.92473 0.89294 0.92684 0.90097 0.89440 0.93042 0.93642 0.92604 0.82388 0.80675 0.81171 0.88302 0.88505 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.11 3.30 6.06 86.38 0.52 3.83 16 3 N -0.98 -34.25 2.77 -519.85 -1.44 -35.69 16 4 C 0.22 8.82 4.50 85.64 0.39 9.20 16 5 C -0.53 -25.79 9.94 25.60 0.25 -25.54 16 6 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 7 C 0.03 1.40 5.47 84.65 0.46 1.86 16 8 N -0.94 -52.06 13.96 21.45 0.30 -51.76 16 9 Si 0.92 38.96 27.47 68.60 1.88 40.84 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 13 S 2.71 92.16 5.64 -56.49 -0.32 91.84 16 14 O -0.97 -32.90 16.24 -128.00 -2.08 -34.98 16 15 O -0.98 -37.63 15.82 -128.00 -2.02 -39.65 16 16 C -0.67 -21.13 5.97 22.28 0.13 -21.00 16 17 C 0.01 0.33 9.51 22.29 0.21 0.54 16 18 C -0.11 -2.83 10.04 22.33 0.22 -2.61 16 19 C 0.12 3.25 6.84 38.31 0.26 3.51 16 20 C -0.01 -0.30 7.35 22.66 0.17 -0.13 16 21 C 0.02 0.62 9.53 22.33 0.21 0.84 16 22 O -0.24 -7.60 10.72 8.54 0.09 -7.51 16 23 C 0.63 19.30 9.07 129.79 1.18 20.48 16 24 O -0.51 -17.66 17.81 19.17 0.34 -17.32 16 25 N -0.54 -13.41 3.21 -784.52 -2.52 -15.93 16 26 C 0.09 1.30 11.07 127.77 1.41 2.71 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 31 H 0.09 2.19 7.61 -2.39 -0.02 2.18 16 32 H 0.05 2.02 7.17 -2.39 -0.02 2.00 16 33 H 0.05 1.89 6.34 -2.38 -0.02 1.87 16 34 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 35 H 0.16 4.85 7.60 -2.91 -0.02 4.83 16 36 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.17 4.25 7.61 -2.91 -0.02 4.23 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.42 8.06 -2.39 -0.02 1.40 16 40 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -67.07 357.61 1.42 -65.64 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.02 Total: 14.26 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.17 Total: -9.75 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.65 Total: -103.38 kcal Atomic # 8 Polarization: -95.78 SS G_CDS: -3.67 Total: -99.45 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.88 Total: 40.84 kcal Atomic # 16 Polarization: 92.16 SS G_CDS: -0.32 Total: 91.84 kcal Total: -67.07 1.42 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264058916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.095 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds