Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46421 * 2 1 4 4 C 1.50692 * 109.47047 * 119.99680 * 2 1 3 5 5 H 1.08000 * 119.99974 * 120.00119 * 4 2 1 6 6 C 1.37873 * 120.00553 * 300.00329 * 4 2 1 7 7 N 1.31511 * 120.00291 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99796 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.46939 * 89.99996 * 8 6 4 10 10 H 1.48496 * 109.46998 * 210.00086 * 8 6 4 11 11 H 1.48496 * 109.46935 * 329.99906 * 8 6 4 12 12 N 1.46499 * 109.46982 * 240.00276 * 2 1 3 13 13 S 1.65593 * 120.00181 * 94.99966 * 12 2 1 14 14 O 1.42095 * 106.40554 * 311.45729 * 13 12 2 15 15 O 1.42101 * 106.40409 * 178.53278 * 13 12 2 16 16 C 1.76201 * 107.22046 * 64.99722 * 13 12 2 17 17 C 1.38279 * 119.93126 * 89.99502 * 16 13 12 18 18 C 1.38116 * 120.06823 * 179.72322 * 17 16 13 19 19 C 1.38866 * 119.93108 * 0.26158 * 18 17 16 20 20 N 1.39957 * 120.06857 * 180.02562 * 19 18 17 21 21 C 1.47090 * 125.55930 * 179.71615 * 20 19 18 22 22 C 1.54083 * 103.77947 * 179.90085 * 21 20 19 23 23 O 1.45699 * 104.01025 * 0.34780 * 22 21 20 24 24 C 1.33784 * 109.47634 * 359.77008 * 23 22 21 25 25 O 1.21513 * 123.07713 * 180.02562 * 24 23 22 26 26 C 1.38859 * 119.85838 * 359.97438 * 19 18 17 27 27 C 1.38108 * 119.93305 * 0.02562 * 26 19 18 28 28 H 1.09002 * 109.47438 * 60.00158 * 1 2 3 29 29 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47761 * 299.99989 * 1 2 3 31 31 H 0.97007 * 120.00245 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99866 * 274.99090 * 12 2 1 33 33 H 1.08002 * 119.96731 * 0.02562 * 17 16 13 34 34 H 1.07999 * 120.03368 * 180.27810 * 18 17 16 35 35 H 1.08999 * 110.56298 * 298.59684 * 21 20 19 36 36 H 1.09006 * 110.56041 * 61.44809 * 21 20 19 37 37 H 1.08995 * 110.71881 * 241.61933 * 22 21 20 38 38 H 1.09004 * 110.44759 * 118.93751 * 22 21 20 39 39 H 1.08007 * 120.03212 * 180.02562 * 26 19 18 40 40 H 1.08008 * 119.96539 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9757 1.9951 3.9067 11 1 0.8468 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 16 2.4121 0.1772 -2.5505 14 8 1.3246 1.0593 -2.7922 15 8 2.8777 -0.7634 -3.5085 16 6 3.7927 1.1911 -2.1372 17 6 5.0779 0.7141 -2.3187 18 6 6.1621 1.5086 -2.0011 19 6 5.9605 2.7855 -1.4938 20 7 7.0571 3.5932 -1.1715 21 6 6.9839 4.9606 -0.6345 22 6 8.4602 5.3679 -0.4650 23 8 9.2029 4.2028 -0.9274 24 6 8.3451 3.2489 -1.3072 25 8 8.7013 2.1690 -1.7355 26 6 4.6687 3.2596 -1.3082 27 6 3.5886 2.4604 -1.6277 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9031 -0.5280 4.4376 32 1 2.1110 -1.6561 -1.1949 33 1 5.2340 -0.2788 -2.7138 34 1 7.1656 1.1372 -2.1473 35 1 6.4807 5.6223 -1.3396 36 1 6.4738 4.9668 0.3288 37 1 8.6856 5.5742 0.5812 38 1 8.6889 6.2365 -1.0826 39 1 4.5087 4.2525 -0.9142 40 1 2.5836 2.8288 -1.4839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265889889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -123.849003 kcal Electronic energy + Delta-G solvation = -27728.820157 eV Core-core repulsion = 23635.740990 eV Total energy + Delta-G solvation = -4093.079167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.10698 -40.33357 -38.66766 -38.34713 -37.40919 -36.92102 -36.76094 -34.23105 -32.28443 -32.00654 -30.92036 -30.27409 -27.09243 -25.52766 -25.30037 -23.29127 -22.82320 -22.36329 -20.63600 -19.43704 -19.41004 -18.64263 -18.60585 -18.14048 -17.92072 -17.49819 -16.86149 -16.27327 -15.95967 -15.76320 -15.30866 -15.26990 -15.24136 -15.14584 -14.94361 -14.63235 -14.33963 -14.16678 -13.91869 -13.86161 -13.55975 -13.33673 -13.17772 -13.10094 -12.93555 -12.76727 -12.46152 -12.10597 -12.05061 -12.03997 -11.54235 -11.49020 -11.42115 -11.19664 -10.82488 -10.25132 -10.18164 -9.49508 -8.28445 -6.35153 -0.58520 -0.31128 0.19233 0.98720 1.32231 1.38063 1.39912 1.50997 2.07990 2.31630 2.33964 2.43800 2.82221 3.06606 3.14108 3.25315 3.38454 3.75086 3.88573 3.93359 4.13428 4.19971 4.28547 4.35308 4.46903 4.52034 4.59167 4.64045 4.71707 4.76093 4.89355 4.92976 5.02998 5.07778 5.16189 5.25024 5.49625 5.53284 5.73029 6.04476 6.25395 6.32558 6.56667 6.71705 7.30206 8.87509 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.004111 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.200841 B = 6809.452154 C = 8159.269006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.249 3.751 3 H 0.050 0.950 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.933 3.067 9 H -0.265 1.265 10 H -0.296 1.296 11 H -0.232 1.232 12 N -1.096 6.096 13 S 2.710 3.290 14 O -0.977 6.977 15 O -0.991 6.991 16 C -0.704 4.704 17 C 0.003 3.997 18 C -0.195 4.195 19 C 0.230 3.770 20 N -0.570 5.570 21 C 0.046 3.954 22 C 0.039 3.961 23 O -0.332 6.332 24 C 0.641 3.359 25 O -0.544 6.544 26 C -0.163 4.163 27 C 0.000 4.000 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.267 0.733 32 H 0.419 0.581 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.180 0.820 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 18.761 -7.866 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.142 3.858 3 H 0.068 0.932 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.582 5.582 8 Si 0.759 3.241 9 H -0.191 1.191 10 H -0.223 1.223 11 H -0.155 1.155 12 N -0.856 5.856 13 S 2.801 3.199 14 O -0.968 6.968 15 O -0.981 6.981 16 C -0.794 4.794 17 C -0.017 4.017 18 C -0.216 4.216 19 C 0.135 3.865 20 N -0.305 5.305 21 C -0.074 4.074 22 C -0.034 4.034 23 O -0.242 6.242 24 C 0.397 3.603 25 O -0.431 6.431 26 C -0.184 4.184 27 C -0.020 4.020 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.197 0.803 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.555 18.453 -8.681 21.748 hybrid contribution 0.311 -0.261 1.074 1.148 sum 7.866 18.192 -7.608 21.230 Atomic orbital electron populations 1.22612 0.97776 1.02322 1.00628 1.18727 0.91348 0.92808 0.82906 0.93225 1.21349 1.31715 1.13432 0.90107 0.93471 1.25737 0.96997 0.99958 0.95196 1.70027 1.47158 1.42315 0.98697 0.86093 0.79415 0.80364 0.78221 1.19131 1.22325 1.15544 1.55255 1.81216 1.19276 1.29814 1.01086 0.73664 0.72934 0.72183 1.93523 1.51834 1.67056 1.84343 1.93516 1.82655 1.62491 1.59450 1.30796 1.16098 1.11936 1.20558 1.20878 0.90206 0.99350 0.91256 1.21672 1.01386 0.94193 1.04307 1.17749 0.86019 0.89502 0.93263 1.45617 1.04032 1.17869 1.62989 1.23605 0.99613 0.80021 1.04128 1.24934 0.86607 0.86334 1.05568 1.87322 1.32893 1.26995 1.76956 1.18685 0.80505 0.84052 0.77085 1.90933 1.80680 1.21437 1.50059 1.21118 0.88630 1.03028 1.05609 1.21068 1.00936 0.90638 0.89354 0.91492 0.92022 0.93558 0.92354 0.74619 0.83532 0.83073 0.84689 0.85654 0.84359 0.83702 0.80310 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.93 9.00 71.98 0.65 -6.28 16 2 C 0.25 10.59 2.35 44.24 0.10 10.70 16 3 H 0.05 2.01 6.27 -2.39 -0.01 2.00 16 4 C -0.53 -27.56 9.34 25.60 0.24 -27.32 16 5 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 6 C 0.02 1.07 5.45 84.65 0.46 1.53 16 7 N -0.94 -55.58 13.96 21.45 0.30 -55.28 16 8 Si 0.93 40.25 24.37 68.60 1.67 41.92 16 9 H -0.27 -11.04 6.87 99.48 0.68 -10.36 16 10 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.23 -8.77 6.53 99.48 0.65 -8.12 16 12 N -1.10 -41.10 5.46 -172.53 -0.94 -42.04 16 13 S 2.71 94.09 5.65 -56.49 -0.32 93.77 16 14 O -0.98 -35.91 16.54 -128.00 -2.12 -38.03 16 15 O -0.99 -37.37 17.27 -128.00 -2.21 -39.59 16 16 C -0.70 -22.60 5.82 22.29 0.13 -22.47 16 17 C 0.00 0.10 9.51 22.25 0.21 0.31 16 18 C -0.19 -6.03 9.31 22.39 0.21 -5.82 16 19 C 0.23 5.87 6.63 38.14 0.25 6.12 16 20 N -0.57 -11.41 3.16 -759.80 -2.40 -13.81 16 21 C 0.05 0.31 6.49 86.63 0.56 0.87 16 22 C 0.04 0.18 8.23 72.35 0.60 0.78 16 23 O -0.33 -6.17 11.09 -47.43 -0.53 -6.70 16 24 C 0.64 16.25 8.77 129.91 1.14 17.39 16 25 O -0.54 -18.65 14.75 19.64 0.29 -18.36 16 26 C -0.16 -3.58 9.49 22.39 0.21 -3.37 16 27 C 0.00 0.00 8.87 22.25 0.20 0.20 16 28 H 0.07 2.39 7.64 -2.39 -0.02 2.38 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.84 3.27 -2.39 -0.01 1.83 16 31 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 32 H 0.42 14.89 8.83 -96.75 -0.85 14.03 16 33 H 0.15 4.42 7.61 -2.91 -0.02 4.40 16 34 H 0.15 5.03 5.24 -2.91 -0.02 5.02 16 35 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.18 2.19 7.31 -2.91 -0.02 2.17 16 40 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 Total: -1.00 -79.88 342.88 -1.12 -81.01 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.17 Total: 24.48 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 4.96 Total: -27.37 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.05 Total: -111.13 kcal Atomic # 8 Polarization: -98.10 SS G_CDS: -4.56 Total: -102.67 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.67 Total: 41.92 kcal Atomic # 16 Polarization: 94.09 SS G_CDS: -0.32 Total: 93.77 kcal Total: -79.88 -1.12 -81.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265889889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.841 kcal (2) G-P(sol) polarization free energy of solvation -79.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds