Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 S 1.65605 * 119.99928 * 264.99900 * 12 2 1 14 14 O 1.42100 * 106.39989 * 178.54255 * 13 12 2 15 15 O 1.42093 * 106.40417 * 311.46301 * 13 12 2 16 16 C 1.76199 * 107.21621 * 65.00239 * 13 12 2 17 17 C 1.38279 * 119.93401 * 269.72398 * 16 13 12 18 18 C 1.38112 * 120.07397 * 179.76865 * 17 16 13 19 19 C 1.38868 * 119.92623 * 0.52386 * 18 17 16 20 20 N 1.39954 * 120.06680 * 179.70242 * 19 18 17 21 21 C 1.47090 * 125.56028 * 359.74302 * 20 19 18 22 22 C 1.54088 * 103.77788 * 179.97438 * 21 20 19 23 23 O 1.45705 * 104.01044 * 0.32163 * 22 21 20 24 24 C 1.33785 * 109.47142 * 359.79260 * 23 22 21 25 25 O 1.21518 * 123.06834 * 180.02562 * 24 23 22 26 26 C 1.38866 * 119.86089 * 359.73503 * 19 18 17 27 27 C 1.38109 * 119.93149 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00201 * 85.00286 * 12 2 1 33 33 H 1.08001 * 119.96004 * 0.02562 * 17 16 13 34 34 H 1.07995 * 120.03976 * 180.23718 * 18 17 16 35 35 H 1.09001 * 110.56195 * 298.60754 * 21 20 19 36 36 H 1.08998 * 110.56034 * 61.46443 * 21 20 19 37 37 H 1.08999 * 110.70004 * 241.60314 * 22 21 20 38 38 H 1.08998 * 110.46063 * 118.92171 * 22 21 20 39 39 H 1.08004 * 120.03063 * 179.97438 * 26 19 18 40 40 H 1.08001 * 119.96638 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2436 1.2442 2.1157 16 6 0.9275 0.9146 3.1474 17 6 0.5557 2.1715 2.7067 18 6 -0.6099 2.7503 3.1691 19 6 -1.4033 2.0732 4.0858 20 7 -2.5819 2.6596 4.5610 21 6 -3.0929 3.9846 4.1779 22 6 -4.3983 4.1219 4.9851 23 8 -4.4810 2.8763 5.7365 24 6 -3.4253 2.1083 5.4444 25 8 -3.2478 1.0108 5.9350 26 6 -1.0245 0.8134 4.5305 27 6 0.1392 0.2375 4.0598 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.1110 -1.6562 1.1948 33 1 1.1755 2.6993 1.9970 34 1 -0.9017 3.7303 2.8216 35 1 -2.3844 4.7639 4.4585 36 1 -3.2997 4.0205 3.1083 37 1 -5.2546 4.2236 4.3184 38 1 -4.3394 4.9737 5.6626 39 1 -1.6393 0.2845 5.2438 40 1 0.4341 -0.7424 4.4050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265889890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -104.126106 kcal Electronic energy + Delta-G solvation = -27604.394391 eV Core-core repulsion = 23512.170473 eV Total energy + Delta-G solvation = -4092.223918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32000 -39.30243 -37.70837 -36.69408 -35.94461 -35.42429 -35.27372 -32.19885 -31.30551 -31.02772 -29.50234 -28.30338 -25.27285 -24.79752 -24.27922 -22.27400 -21.40562 -20.95164 -19.05641 -18.52610 -17.93940 -17.71075 -17.31267 -17.21304 -16.06583 -15.80146 -15.22657 -15.17406 -14.86576 -14.67673 -14.43370 -14.39117 -14.23017 -13.65799 -13.55412 -13.08072 -12.90809 -12.86152 -12.67127 -12.20089 -11.74883 -11.69207 -11.54917 -11.43213 -11.29691 -11.20209 -11.00310 -10.85251 -10.75676 -10.57629 -10.37469 -10.30840 -10.10347 -9.23018 -9.04207 -8.66844 -8.49481 -8.27304 -6.15271 -4.21686 0.71484 1.09076 1.33108 1.80604 2.27341 2.87010 3.25105 3.32004 3.35696 3.44729 3.52534 3.83000 4.04619 4.11720 4.31728 4.36193 4.63031 4.68414 4.74879 4.87631 4.88938 5.15475 5.18855 5.23976 5.31400 5.58267 5.79246 6.01962 6.11235 6.21736 6.24374 6.33376 6.75305 6.78753 6.81685 6.90169 6.98580 7.48621 7.55082 7.64766 7.84798 7.98565 8.24990 8.80976 9.44211 10.90973 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.003302 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.525427 B = 8477.074170 C = 9578.880208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.268 3.732 3 H 0.051 0.949 4 C -0.520 4.520 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.099 6.099 13 S 2.691 3.309 14 O -0.982 6.982 15 O -0.962 6.962 16 C -0.687 4.687 17 C 0.019 3.981 18 C -0.175 4.175 19 C 0.224 3.776 20 N -0.571 5.571 21 C 0.056 3.944 22 C 0.042 3.958 23 O -0.320 6.320 24 C 0.645 3.355 25 O -0.496 6.496 26 C -0.178 4.178 27 C 0.012 3.988 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.410 0.590 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.161 0.839 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 9.306 12.277 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.860 5.860 13 S 2.779 3.221 14 O -0.972 6.972 15 O -0.952 6.952 16 C -0.774 4.774 17 C -0.001 4.001 18 C -0.197 4.197 19 C 0.131 3.869 20 N -0.307 5.307 21 C -0.067 4.067 22 C -0.032 4.032 23 O -0.230 6.230 24 C 0.400 3.600 25 O -0.380 6.380 26 C -0.199 4.199 27 C -0.008 4.008 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.179 0.821 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.708 9.156 12.970 18.609 hybrid contribution -0.637 -0.373 -1.080 1.308 sum -10.345 8.783 11.890 18.043 Atomic orbital electron populations 1.22307 0.98614 1.00093 1.00891 1.18615 0.90717 0.93100 0.81143 0.93105 1.21235 1.31787 1.13128 0.89815 0.91691 1.24899 0.94878 0.95011 0.99061 1.69855 1.36413 1.22644 1.23879 0.86445 0.79307 0.79263 0.82099 1.20634 1.21108 1.19746 1.55523 1.83833 1.19140 1.27492 1.01822 0.73887 0.73628 0.72775 1.93522 1.81421 1.61932 1.60298 1.93564 1.63393 1.56681 1.81555 1.31209 1.25785 1.07351 1.13016 1.20769 0.93643 0.91977 0.93672 1.20753 0.96627 1.01506 1.00775 1.17624 0.83156 0.92562 0.93533 1.45497 1.22724 1.18871 1.43567 1.23070 0.96005 0.85089 1.02523 1.24388 0.98272 0.85432 0.95156 1.87340 1.42157 1.30222 1.63284 1.18463 0.78593 0.84215 0.78702 1.90975 1.74282 1.16826 1.55880 1.21616 0.99217 0.94715 1.04347 1.20791 0.90956 0.98407 0.90648 0.94736 0.96693 0.88883 0.92642 0.75632 0.83338 0.84859 0.87742 0.87553 0.86873 0.86979 0.82146 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.29 37.16 0.35 -3.17 16 2 C 0.27 6.25 2.89 -69.08 -0.20 6.05 16 3 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 4 C -0.52 -13.43 8.76 -34.44 -0.30 -13.73 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.69 11.32 55.43 0.63 -23.06 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 N -1.10 -21.77 5.46 -5.88 -0.03 -21.80 16 13 S 2.69 50.25 5.72 -107.50 -0.61 49.64 16 14 O -0.98 -19.24 17.28 -57.17 -0.99 -20.22 16 15 O -0.96 -20.57 16.61 -57.17 -0.95 -21.52 16 16 C -0.69 -11.28 5.06 -39.55 -0.20 -11.48 16 17 C 0.02 0.29 8.59 -39.61 -0.34 -0.05 16 18 C -0.18 -2.20 9.49 -39.39 -0.37 -2.57 16 19 C 0.22 2.96 6.63 -83.68 -0.56 2.41 16 20 N -0.57 -6.12 3.16 -118.27 -0.37 -6.50 16 21 C 0.06 0.29 6.49 -3.15 -0.02 0.27 16 22 C 0.04 0.17 8.23 37.73 0.31 0.48 16 23 O -0.32 -3.13 11.09 -37.87 -0.42 -3.55 16 24 C 0.65 8.11 8.77 53.71 0.47 8.58 16 25 O -0.50 -7.96 14.75 -19.12 -0.28 -8.25 16 26 C -0.18 -2.63 9.31 -39.40 -0.37 -2.99 16 27 C 0.01 0.18 9.51 -39.61 -0.38 -0.20 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.28 6.18 -51.93 -0.32 -0.04 16 30 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.41 7.40 8.83 -34.47 -0.30 7.09 16 33 H 0.15 2.21 7.60 -52.49 -0.40 1.81 16 34 H 0.13 1.21 7.31 -52.49 -0.38 0.83 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.16 2.43 5.24 -52.48 -0.28 2.16 16 40 H 0.14 2.00 7.61 -52.49 -0.40 1.60 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -34.57 347.76 -8.96 -43.53 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.45 Total: 5.97 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.70 Total: -14.83 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.22 Total: -51.36 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -2.64 Total: -53.54 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.61 Total: 49.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.57 -8.96 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265889890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.597 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds