Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 S 1.65605 * 119.99928 * 264.99900 * 12 2 1 14 14 O 1.42100 * 106.39989 * 178.54255 * 13 12 2 15 15 O 1.42093 * 106.40417 * 311.46301 * 13 12 2 16 16 C 1.76199 * 107.21621 * 65.00239 * 13 12 2 17 17 C 1.38279 * 119.93401 * 269.72398 * 16 13 12 18 18 C 1.38112 * 120.07397 * 179.76865 * 17 16 13 19 19 C 1.38868 * 119.92623 * 0.52386 * 18 17 16 20 20 N 1.39954 * 120.06680 * 179.70242 * 19 18 17 21 21 C 1.47090 * 125.56028 * 359.74302 * 20 19 18 22 22 C 1.54088 * 103.77788 * 179.97438 * 21 20 19 23 23 O 1.45705 * 104.01044 * 0.32163 * 22 21 20 24 24 C 1.33785 * 109.47142 * 359.79260 * 23 22 21 25 25 O 1.21518 * 123.06834 * 180.02562 * 24 23 22 26 26 C 1.38866 * 119.86089 * 359.73503 * 19 18 17 27 27 C 1.38109 * 119.93149 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00201 * 85.00286 * 12 2 1 33 33 H 1.08001 * 119.96004 * 0.02562 * 17 16 13 34 34 H 1.07995 * 120.03976 * 180.23718 * 18 17 16 35 35 H 1.09001 * 110.56195 * 298.60754 * 21 20 19 36 36 H 1.08998 * 110.56034 * 61.46443 * 21 20 19 37 37 H 1.08999 * 110.70004 * 241.60314 * 22 21 20 38 38 H 1.08998 * 110.46063 * 118.92171 * 22 21 20 39 39 H 1.08004 * 120.03063 * 179.97438 * 26 19 18 40 40 H 1.08001 * 119.96638 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2436 1.2442 2.1157 16 6 0.9275 0.9146 3.1474 17 6 0.5557 2.1715 2.7067 18 6 -0.6099 2.7503 3.1691 19 6 -1.4033 2.0732 4.0858 20 7 -2.5819 2.6596 4.5610 21 6 -3.0929 3.9846 4.1779 22 6 -4.3983 4.1219 4.9851 23 8 -4.4810 2.8763 5.7365 24 6 -3.4253 2.1083 5.4444 25 8 -3.2478 1.0108 5.9350 26 6 -1.0245 0.8134 4.5305 27 6 0.1392 0.2375 4.0598 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.1110 -1.6562 1.1948 33 1 1.1755 2.6993 1.9970 34 1 -0.9017 3.7303 2.8216 35 1 -2.3844 4.7639 4.4585 36 1 -3.2997 4.0205 3.1083 37 1 -5.2546 4.2236 4.3184 38 1 -4.3394 4.9737 5.6626 39 1 -1.6393 0.2845 5.2438 40 1 0.4341 -0.7424 4.4050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265889890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -129.845173 kcal Electronic energy + Delta-G solvation = -27605.509654 eV Core-core repulsion = 23512.170473 eV Total energy + Delta-G solvation = -4093.339180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09395 -40.33675 -38.65057 -38.27941 -37.24608 -36.89496 -36.73347 -34.09048 -32.26933 -31.99277 -30.28993 -30.04873 -27.20691 -25.49644 -25.28104 -23.21950 -22.78614 -22.33374 -20.52412 -19.41793 -19.22685 -18.75723 -18.59204 -18.12278 -17.72772 -17.17870 -16.74586 -16.29156 -15.93436 -15.73215 -15.29237 -15.25616 -15.23903 -15.13651 -14.64836 -14.49523 -14.22145 -14.00883 -13.87728 -13.47880 -13.32170 -13.16329 -13.08938 -12.97528 -12.79486 -12.73169 -12.44583 -12.21038 -12.05497 -12.00708 -11.94496 -11.49512 -11.45839 -11.07758 -10.56694 -10.17019 -10.06915 -9.47045 -8.11957 -6.24504 -0.54384 -0.29211 0.21132 1.00106 1.33763 1.46551 1.48541 1.57760 2.15694 2.32758 2.44780 2.50806 2.86963 3.15304 3.18097 3.27286 3.43386 3.77049 3.89717 3.96856 4.15199 4.22116 4.38132 4.49127 4.57496 4.60358 4.65201 4.74343 4.91638 4.94693 5.05783 5.06288 5.10608 5.17937 5.18504 5.62418 5.74341 5.80654 6.05785 6.06510 6.15787 6.44468 6.58074 6.84849 7.44199 8.93308 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.003302 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.525427 B = 8477.074170 C = 9578.880208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.029 0.971 4 C -0.544 4.544 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.273 1.273 12 N -1.101 6.101 13 S 2.705 3.295 14 O -0.994 6.994 15 O -0.993 6.993 16 C -0.697 4.697 17 C 0.005 3.995 18 C -0.160 4.160 19 C 0.232 3.768 20 N -0.570 5.570 21 C 0.046 3.954 22 C 0.039 3.961 23 O -0.332 6.332 24 C 0.642 3.358 25 O -0.544 6.544 26 C -0.191 4.191 27 C 0.006 3.994 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.416 0.584 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 11.114 12.163 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.168 3.832 3 H 0.047 0.953 4 C -0.583 4.583 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.862 5.862 13 S 2.798 3.202 14 O -0.984 6.984 15 O -0.984 6.984 16 C -0.788 4.788 17 C -0.015 4.015 18 C -0.182 4.182 19 C 0.137 3.863 20 N -0.305 5.305 21 C -0.074 4.074 22 C -0.034 4.034 23 O -0.242 6.242 24 C 0.398 3.602 25 O -0.431 6.431 26 C -0.212 4.212 27 C -0.014 4.014 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.165 0.835 34 H 0.193 0.807 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.254 10.983 12.838 20.300 hybrid contribution -0.284 -0.799 -0.947 1.271 sum -11.538 10.184 11.890 19.448 Atomic orbital electron populations 1.22117 0.97591 1.00005 1.00901 1.18345 0.91388 0.91934 0.81515 0.95296 1.21603 1.32076 1.13410 0.91219 0.91936 1.25596 0.95106 0.95704 1.01542 1.69951 1.36967 1.23457 1.24479 0.85556 0.78752 0.78324 0.78971 1.20015 1.20805 1.19744 1.55360 1.83982 1.19531 1.27293 1.01071 0.74222 0.72864 0.72082 1.93497 1.82242 1.62483 1.60185 1.93517 1.65361 1.57434 1.82041 1.30680 1.25052 1.08390 1.14635 1.20938 0.94838 0.91666 0.94076 1.21045 0.94949 1.02732 0.99432 1.17704 0.83850 0.91968 0.92791 1.45608 1.21499 1.20599 1.42759 1.23596 0.96959 0.82821 1.04046 1.24924 0.98764 0.83888 0.95789 1.87324 1.40785 1.32066 1.63976 1.18661 0.79118 0.83967 0.78470 1.90931 1.75519 1.19075 1.57532 1.21660 0.99031 0.95874 1.04662 1.20867 0.91159 0.98789 0.90556 0.94788 0.94415 0.90982 0.92501 0.74900 0.83469 0.80702 0.85015 0.85543 0.84235 0.83882 0.82816 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 9.29 71.98 0.67 -5.77 16 2 C 0.27 12.88 2.89 44.25 0.13 13.00 16 3 H 0.03 1.50 7.50 -2.39 -0.02 1.48 16 4 C -0.54 -28.32 8.76 25.60 0.22 -28.09 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.02 1.10 5.30 84.66 0.45 1.54 16 7 N -0.91 -48.51 11.32 21.45 0.24 -48.26 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 N -1.10 -44.30 5.46 -172.52 -0.94 -45.24 16 13 S 2.71 102.67 5.72 -56.49 -0.32 102.35 16 14 O -0.99 -39.47 17.28 -128.00 -2.21 -41.68 16 15 O -0.99 -43.41 16.61 -128.00 -2.13 -45.54 16 16 C -0.70 -22.72 5.06 22.29 0.11 -22.61 16 17 C 0.00 0.14 8.59 22.25 0.19 0.33 16 18 C -0.16 -3.57 9.49 22.39 0.21 -3.36 16 19 C 0.23 5.64 6.63 38.15 0.25 5.89 16 20 N -0.57 -10.72 3.16 -759.80 -2.40 -13.12 16 21 C 0.05 0.28 6.49 86.64 0.56 0.84 16 22 C 0.04 0.15 8.23 72.35 0.60 0.75 16 23 O -0.33 -5.75 11.09 -47.44 -0.53 -6.28 16 24 C 0.64 15.28 8.77 129.91 1.14 16.42 16 25 O -0.54 -17.61 14.75 19.63 0.29 -17.32 16 26 C -0.19 -5.55 9.31 22.39 0.21 -5.35 16 27 C 0.01 0.19 9.51 22.25 0.21 0.40 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.43 6.18 -2.39 -0.01 1.42 16 30 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 31 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 32 H 0.42 15.30 8.83 -96.74 -0.85 14.44 16 33 H 0.15 4.30 7.60 -2.91 -0.02 4.27 16 34 H 0.18 2.34 7.31 -2.91 -0.02 2.32 16 35 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.15 4.75 5.24 -2.91 -0.02 4.74 16 40 H 0.15 4.22 7.61 -2.91 -0.02 4.20 16 Total: -1.00 -76.42 347.76 -0.77 -77.19 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.25 Total: 20.25 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.96 Total: -25.99 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.10 Total: -106.63 kcal Atomic # 8 Polarization: -106.24 SS G_CDS: -4.57 Total: -110.81 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 102.67 SS G_CDS: -0.32 Total: 102.35 kcal Total: -76.42 -0.77 -77.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265889890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.656 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds