Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47083 * 2 1 4 4 C 1.34229 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99850 * 179.97438 * 4 3 2 7 7 N 1.46508 * 109.46862 * 179.97438 * 6 4 3 8 8 C 1.35941 * 119.61005 * 90.00238 * 7 6 4 9 9 C 1.35269 * 120.82401 * 179.97438 * 8 7 6 10 10 C 1.40193 * 120.03678 * 359.97296 * 9 8 7 11 11 C 1.36826 * 119.23362 * 0.02562 * 10 9 8 12 12 N 1.40149 * 120.40556 * 179.97438 * 11 10 9 13 13 C 1.34766 * 120.00249 * 121.53052 * 12 11 10 14 14 O 1.21301 * 120.00173 * 355.01289 * 13 12 11 15 15 C 1.50701 * 120.00317 * 174.73061 * 13 12 11 16 16 S 1.80994 * 109.47457 * 180.27553 * 15 13 12 17 17 C 1.76205 * 100.00048 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99921 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99890 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00141 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47218 * 119.99977 * 21 19 17 24 24 H 1.48500 * 109.47366 * 240.00087 * 21 19 17 25 25 C 1.34665 * 119.61566 * 270.24791 * 7 6 4 26 26 O 1.22061 * 120.03407 * 0.03662 * 25 7 6 27 27 H 1.08998 * 109.47473 * 300.00405 * 1 2 3 28 28 H 1.08999 * 109.46864 * 60.00752 * 1 2 3 29 29 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47473 * 239.99595 * 2 1 3 31 31 H 1.08999 * 109.46864 * 119.99248 * 2 1 3 32 32 H 1.08996 * 109.46914 * 60.00347 * 6 4 3 33 33 H 1.08998 * 109.47175 * 299.99822 * 6 4 3 34 34 H 1.08002 * 119.59181 * 359.95112 * 8 7 6 35 35 H 1.08004 * 119.98840 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.38760 * 180.02562 * 10 9 8 37 37 H 0.97003 * 119.99757 * 301.53782 * 12 11 10 38 38 H 1.09003 * 109.47063 * 300.28127 * 15 13 12 39 39 H 1.09004 * 109.46713 * 60.27513 * 15 13 12 40 40 H 0.96995 * 120.00001 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.0555 2.8248 -1.1799 9 6 7.4061 2.7545 -1.2073 10 6 8.1314 2.7184 -0.0081 11 6 7.4572 2.7546 1.1819 12 7 8.1576 2.7193 2.3954 13 6 8.0183 3.7235 3.2833 14 8 7.3591 4.7003 2.9958 15 6 8.6763 3.6301 4.6358 16 16 8.2993 5.1183 5.5944 17 6 9.1677 4.7517 7.0831 18 1 9.7132 3.8243 7.1755 19 6 9.1505 5.6548 8.1370 20 7 8.4859 6.7854 8.0241 21 14 10.0717 5.2664 9.7149 22 1 10.7349 3.9438 9.5881 23 1 11.0970 6.3123 9.9598 24 1 9.1160 5.2346 10.8511 25 6 6.0470 2.8218 1.1727 26 8 5.4298 2.8497 2.2254 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.5843 3.4701 0.8895 33 1 3.5851 3.4691 -0.8905 34 1 5.5041 2.8523 -2.1081 35 1 7.9261 2.7270 -2.1535 36 1 9.2099 2.6627 -0.0234 37 1 8.7427 1.9721 2.5960 38 1 8.3003 2.7533 5.1631 39 1 9.7555 3.5429 4.5096 40 1 8.4736 7.4163 8.7607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269987320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -107.986346 kcal Electronic energy + Delta-G solvation = -26365.190625 eV Core-core repulsion = 22272.799315 eV Total energy + Delta-G solvation = -4092.391311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85337 -40.58875 -39.01847 -37.09058 -36.92346 -35.51417 -33.28116 -32.37903 -32.17826 -30.08524 -29.03993 -28.29422 -25.45004 -24.35354 -23.57057 -23.02195 -21.48823 -20.59987 -18.39735 -18.29371 -17.83582 -17.63076 -17.00779 -16.88852 -16.76523 -16.23250 -15.61019 -14.98264 -14.79092 -14.76122 -14.69298 -14.47415 -14.01492 -13.67466 -13.23047 -13.19132 -13.09953 -12.80731 -12.56862 -12.48682 -12.25683 -12.10967 -12.00882 -11.89372 -11.12806 -11.03148 -10.96862 -10.96078 -10.73404 -10.51698 -10.16209 -9.76246 -9.41076 -9.18466 -9.02273 -8.16980 -7.83710 -6.43560 -6.16793 -3.86494 0.58642 1.73970 1.79603 1.86126 2.47447 3.07635 3.16566 3.25206 3.31679 3.36777 3.57914 3.74584 4.16823 4.24758 4.27012 4.30774 4.50298 4.54838 4.61712 4.82998 4.84098 4.92101 5.07097 5.18248 5.19208 5.23502 5.34747 5.46132 5.54379 5.70816 5.82783 5.92139 5.99036 5.99899 6.19568 6.23973 6.68824 6.88737 7.27987 7.63523 7.65532 7.93122 8.40533 8.67137 9.28437 10.90753 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002393 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.961582 B =11697.095945 C =12861.879406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.355 6.355 4 C 0.451 3.549 5 O -0.494 6.494 6 C 0.103 3.897 7 N -0.487 5.487 8 C 0.120 3.880 9 C -0.207 4.207 10 C -0.044 4.044 11 C 0.048 3.952 12 N -0.672 5.672 13 C 0.538 3.462 14 O -0.494 6.494 15 C -0.150 4.150 16 S -0.057 6.057 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.523 3.477 26 O -0.515 6.515 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.408 0.592 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -13.322 -25.100 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.292 3.708 5 O -0.381 6.381 6 C -0.021 4.021 7 N -0.201 5.201 8 C -0.005 4.005 9 C -0.231 4.231 10 C -0.068 4.068 11 C -0.050 4.050 12 N -0.324 5.324 13 C 0.326 3.674 14 O -0.365 6.365 15 C -0.300 4.300 16 S 0.169 5.831 17 C -0.682 4.682 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.321 3.679 26 O -0.392 6.392 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.245 0.755 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.041 -11.807 -24.699 29.519 hybrid contribution 1.663 -2.037 1.344 2.953 sum -9.378 -13.844 -23.355 28.724 Atomic orbital electron populations 1.21818 0.92262 1.03168 1.03743 1.23091 0.95561 0.79631 1.02816 1.86476 1.23668 1.33030 1.83927 1.23858 0.81250 0.92744 0.72990 1.90720 1.60409 1.42626 1.44307 1.21285 0.79336 0.92256 1.09184 1.45011 1.06462 1.61437 1.07216 1.21835 0.93995 0.95830 0.88834 1.20433 0.92207 1.11412 0.99003 1.21487 1.00914 0.93569 0.90848 1.18058 0.89824 1.09806 0.87326 1.43229 1.47514 1.25151 1.16467 1.20410 0.80165 0.81686 0.85180 1.90697 1.37970 1.30502 1.77362 1.23495 1.03077 1.08065 0.95389 1.85426 1.68605 1.17519 1.11524 1.22920 1.36712 1.07985 1.00580 0.90844 1.25000 0.95539 0.94495 0.98649 1.70033 1.39550 1.08412 1.32329 0.86108 0.79211 0.78420 0.81692 1.19617 1.20596 1.20587 1.17185 0.88794 0.79089 0.82871 1.91033 1.68977 1.50021 1.29196 0.91179 0.91392 0.90060 0.91114 0.90973 0.83732 0.84523 0.82157 0.83242 0.84319 0.75484 0.88942 0.89066 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.35 -3.36 10.22 -39.26 -0.40 -3.76 16 4 C 0.45 4.89 8.02 36.00 0.29 5.18 16 5 O -0.49 -6.89 16.18 -18.75 -0.30 -7.19 16 6 C 0.10 0.94 5.92 -5.19 -0.03 0.91 16 7 N -0.49 -5.69 2.08 -120.82 -0.25 -5.95 16 8 C 0.12 0.95 10.28 -16.79 -0.17 0.77 16 9 C -0.21 -1.62 10.00 -39.91 -0.40 -2.02 16 10 C -0.04 -0.47 10.01 -39.36 -0.39 -0.86 16 11 C 0.05 0.72 5.71 -83.45 -0.48 0.24 16 12 N -0.67 -10.78 5.18 -9.72 -0.05 -10.83 16 13 C 0.54 11.28 7.17 -10.99 -0.08 11.20 16 14 O -0.49 -12.35 14.83 -7.30 -0.11 -12.46 16 15 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.53 -15.68 9.50 30.94 0.29 -15.39 16 18 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.81 13.22 55.49 0.73 -26.08 16 21 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.52 8.72 6.97 -15.19 -0.11 8.62 16 26 O -0.51 -10.86 15.16 -7.98 -0.12 -10.98 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.15 1.50 7.39 -51.93 -0.38 1.11 16 33 H 0.14 0.54 8.01 -51.93 -0.42 0.12 16 34 H 0.16 0.54 8.04 -52.49 -0.42 0.11 16 35 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.41 4.98 8.83 -40.82 -0.36 4.62 16 38 H 0.09 1.91 8.14 -51.91 -0.42 1.49 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -42.76 371.52 -7.41 -50.17 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.93 Total: 0.43 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.34 Total: 7.96 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.43 Total: -42.85 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.93 Total: -34.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -42.76 -7.41 -50.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269987320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.817 kcal (2) G-P(sol) polarization free energy of solvation -42.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds