Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47083 * 2 1 4 4 C 1.34229 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99850 * 179.97438 * 4 3 2 7 7 N 1.46508 * 109.46862 * 179.97438 * 6 4 3 8 8 C 1.35941 * 119.61005 * 90.00238 * 7 6 4 9 9 C 1.35269 * 120.82401 * 179.97438 * 8 7 6 10 10 C 1.40193 * 120.03678 * 359.97296 * 9 8 7 11 11 C 1.36826 * 119.23362 * 0.02562 * 10 9 8 12 12 N 1.40149 * 120.40556 * 179.97438 * 11 10 9 13 13 C 1.34766 * 120.00249 * 121.53052 * 12 11 10 14 14 O 1.21301 * 120.00173 * 355.01289 * 13 12 11 15 15 C 1.50701 * 120.00317 * 174.73061 * 13 12 11 16 16 S 1.80994 * 109.47457 * 180.27553 * 15 13 12 17 17 C 1.76205 * 100.00048 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99921 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99890 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00141 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47218 * 119.99977 * 21 19 17 24 24 H 1.48500 * 109.47366 * 240.00087 * 21 19 17 25 25 C 1.34665 * 119.61566 * 270.24791 * 7 6 4 26 26 O 1.22061 * 120.03407 * 0.03662 * 25 7 6 27 27 H 1.08998 * 109.47473 * 300.00405 * 1 2 3 28 28 H 1.08999 * 109.46864 * 60.00752 * 1 2 3 29 29 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47473 * 239.99595 * 2 1 3 31 31 H 1.08999 * 109.46864 * 119.99248 * 2 1 3 32 32 H 1.08996 * 109.46914 * 60.00347 * 6 4 3 33 33 H 1.08998 * 109.47175 * 299.99822 * 6 4 3 34 34 H 1.08002 * 119.59181 * 359.95112 * 8 7 6 35 35 H 1.08004 * 119.98840 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.38760 * 180.02562 * 10 9 8 37 37 H 0.97003 * 119.99757 * 301.53782 * 12 11 10 38 38 H 1.09003 * 109.47063 * 300.28127 * 15 13 12 39 39 H 1.09004 * 109.46713 * 60.27513 * 15 13 12 40 40 H 0.96995 * 120.00001 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.0555 2.8248 -1.1799 9 6 7.4061 2.7545 -1.2073 10 6 8.1314 2.7184 -0.0081 11 6 7.4572 2.7546 1.1819 12 7 8.1576 2.7193 2.3954 13 6 8.0183 3.7235 3.2833 14 8 7.3591 4.7003 2.9958 15 6 8.6763 3.6301 4.6358 16 16 8.2993 5.1183 5.5944 17 6 9.1677 4.7517 7.0831 18 1 9.7132 3.8243 7.1755 19 6 9.1505 5.6548 8.1370 20 7 8.4859 6.7854 8.0241 21 14 10.0717 5.2664 9.7149 22 1 10.7349 3.9438 9.5881 23 1 11.0970 6.3123 9.9598 24 1 9.1160 5.2346 10.8511 25 6 6.0470 2.8218 1.1727 26 8 5.4298 2.8497 2.2254 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.5843 3.4701 0.8895 33 1 3.5851 3.4691 -0.8905 34 1 5.5041 2.8523 -2.1081 35 1 7.9261 2.7270 -2.1535 36 1 9.2099 2.6627 -0.0234 37 1 8.7427 1.9721 2.5960 38 1 8.3003 2.7533 5.1631 39 1 9.7555 3.5429 4.5096 40 1 8.4736 7.4163 8.7607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269987320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -139.296901 kcal Electronic energy + Delta-G solvation = -26366.548353 eV Core-core repulsion = 22272.799315 eV Total energy + Delta-G solvation = -4093.749038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.79727 -41.49702 -40.41472 -38.09096 -37.86490 -36.67982 -34.60887 -34.37405 -32.77219 -31.45379 -29.85042 -29.55060 -27.69099 -25.14768 -24.52369 -23.77689 -22.30052 -22.01626 -19.97321 -19.21042 -19.13157 -18.70180 -18.00976 -17.82716 -17.72244 -17.55023 -16.90408 -16.67630 -16.26003 -16.00634 -15.88202 -15.46173 -15.35059 -14.87574 -14.54590 -14.46956 -13.92315 -13.68916 -13.58760 -13.50009 -13.22943 -13.18710 -13.07571 -12.94251 -12.92158 -12.62733 -12.58487 -12.06662 -11.75876 -11.63624 -11.61133 -11.21745 -11.17426 -11.01443 -10.34970 -10.31093 -8.82715 -8.69106 -8.36374 -6.15235 -0.27912 0.88554 0.92097 1.06771 1.23881 1.40465 1.43042 1.51849 1.57947 1.82217 2.24786 2.28613 2.63922 2.97361 3.27920 3.43240 3.53816 3.77242 3.87906 3.94471 3.98352 4.00193 4.09108 4.16196 4.23523 4.27494 4.38677 4.43048 4.64888 4.76704 4.88055 5.03788 5.06816 5.16914 5.32308 5.39966 5.46809 5.66407 5.93477 6.18406 6.36865 6.46091 6.87247 7.04167 7.23870 8.73510 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002393 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.961582 B =11697.095945 C =12861.879406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.454 3.546 5 O -0.530 6.530 6 C 0.099 3.901 7 N -0.485 5.485 8 C 0.133 3.867 9 C -0.212 4.212 10 C -0.002 4.002 11 C -0.030 4.030 12 N -0.650 5.650 13 C 0.538 3.462 14 O -0.546 6.546 15 C -0.125 4.125 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.003 2.997 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.502 3.498 26 O -0.588 6.588 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.198 0.802 34 H 0.219 0.781 35 H 0.199 0.801 36 H 0.167 0.833 37 H 0.423 0.577 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 -14.861 -28.157 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.270 6.270 4 C 0.297 3.703 5 O -0.419 6.419 6 C -0.024 4.024 7 N -0.197 5.197 8 C 0.008 3.992 9 C -0.234 4.234 10 C -0.026 4.026 11 C -0.126 4.126 12 N -0.301 5.301 13 C 0.325 3.675 14 O -0.421 6.421 15 C -0.277 4.277 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.824 3.176 22 H -0.180 1.180 23 H -0.195 1.195 24 H -0.199 1.199 25 C 0.304 3.696 26 O -0.473 6.473 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.215 0.785 34 H 0.236 0.764 35 H 0.216 0.784 36 H 0.185 0.815 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.083 -13.396 -27.847 32.505 hybrid contribution 1.291 -1.658 1.951 2.868 sum -8.793 -15.054 -25.896 31.218 Atomic orbital electron populations 1.21836 0.90108 1.04497 1.03918 1.23333 0.97247 0.78769 1.02521 1.86486 1.22947 1.34145 1.83423 1.24137 0.81411 0.92914 0.71835 1.90700 1.61179 1.43841 1.46229 1.21626 0.78058 0.91596 1.11089 1.45113 1.07662 1.59659 1.07282 1.22960 0.94895 0.92190 0.89113 1.21094 0.92343 1.10279 0.99681 1.22002 1.02535 0.87950 0.90089 1.18269 0.89670 1.16757 0.87928 1.42748 1.47005 1.23958 1.16355 1.20211 0.79599 0.82225 0.85481 1.90659 1.40344 1.32807 1.78335 1.23319 1.04890 1.04194 0.95255 1.85607 1.69853 1.22974 1.13819 1.23239 1.36823 1.08563 1.00750 0.89887 1.26195 0.96339 0.94048 1.02781 1.70199 1.41132 1.09712 1.33790 0.84847 0.77723 0.78919 0.76062 1.18045 1.19546 1.19944 1.17585 0.89666 0.78983 0.83400 1.90974 1.70242 1.54312 1.31737 0.91854 0.90301 0.88159 0.90144 0.92611 0.85727 0.78541 0.76437 0.78366 0.81501 0.73721 0.88030 0.86284 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 71.98 0.74 -0.59 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.35 -6.51 10.22 -51.41 -0.53 -7.04 16 4 C 0.45 9.63 8.02 71.24 0.57 10.20 16 5 O -0.53 -14.73 16.18 21.96 0.36 -14.37 16 6 C 0.10 1.69 5.92 85.63 0.51 2.20 16 7 N -0.49 -10.70 2.08 -654.29 -1.36 -12.06 16 8 C 0.13 1.50 10.28 83.37 0.86 2.36 16 9 C -0.21 -2.25 10.00 22.06 0.22 -2.03 16 10 C 0.00 -0.04 10.01 22.41 0.22 0.19 16 11 C -0.03 -0.89 5.71 38.20 0.22 -0.68 16 12 N -0.65 -21.24 5.18 -303.05 -1.57 -22.81 16 13 C 0.54 23.53 7.17 87.66 0.63 24.16 16 14 O -0.55 -29.03 14.83 9.18 0.14 -28.90 16 15 C -0.13 -5.62 6.16 71.24 0.44 -5.18 16 16 S -0.15 -8.94 20.57 -56.49 -1.16 -10.10 16 17 C -0.55 -32.80 9.50 67.96 0.65 -32.15 16 18 H 0.08 4.64 7.80 -2.91 -0.02 4.62 16 19 C 0.01 0.65 5.49 84.86 0.47 1.11 16 20 N -0.91 -58.07 13.22 21.65 0.29 -57.79 16 21 Si 1.00 45.31 29.55 68.60 2.03 47.33 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.50 17.29 6.97 84.98 0.59 17.88 16 26 O -0.59 -26.88 15.16 6.76 0.10 -26.77 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.12 2.75 7.39 -2.39 -0.02 2.74 16 33 H 0.20 0.79 8.01 -2.39 -0.02 0.77 16 34 H 0.22 -0.09 8.04 -2.91 -0.02 -0.11 16 35 H 0.20 0.26 8.06 -2.91 -0.02 0.23 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.42 10.28 8.83 -92.71 -0.82 9.46 16 38 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 39 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 40 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -103.88 371.52 5.11 -98.77 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.27 Total: 14.98 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 6.56 Total: 18.75 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -2.64 Total: -92.65 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: 0.07 Total: -77.08 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.10 kcal Total: -103.88 5.11 -98.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269987320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.524 kcal (2) G-P(sol) polarization free energy of solvation -103.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds