Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46686 * 2 1 4 4 C 1.34877 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.21639 * 120.00337 * 359.97438 * 4 3 2 6 6 C 1.46476 * 120.00148 * 180.02562 * 4 3 2 7 7 C 1.44617 * 123.60895 * 0.17511 * 6 4 3 8 8 C 1.32584 * 113.17076 * 180.24946 * 7 6 4 9 9 S 1.75458 * 110.83490 * 359.77430 * 8 7 6 10 10 C 1.37265 * 123.61180 * 180.02562 * 6 4 3 11 11 N 1.38355 * 124.66388 * 0.03006 * 10 6 4 12 12 C 1.34777 * 120.00370 * 179.45222 * 11 10 6 13 13 O 1.21389 * 119.99589 * 359.97438 * 12 11 10 14 14 C 1.49296 * 120.00421 * 180.02562 * 12 11 10 15 15 O 1.21370 * 119.99421 * 359.97438 * 14 12 11 16 16 N 1.34773 * 120.00048 * 179.97438 * 14 12 11 17 17 C 1.46506 * 119.99969 * 179.97438 * 16 14 12 18 18 C 1.52992 * 109.47162 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47273 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99501 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.00073 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00644 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47145 * 59.99804 * 23 21 19 25 25 H 1.48499 * 109.47655 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47229 * 299.99995 * 23 21 19 27 27 H 1.09001 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47323 * 299.99352 * 1 2 3 29 29 H 1.08999 * 109.47618 * 60.00601 * 1 2 3 30 30 H 1.09003 * 109.47611 * 240.00309 * 2 1 3 31 31 H 1.08999 * 109.47618 * 119.99399 * 2 1 3 32 32 H 1.08000 * 123.41459 * 0.02562 * 7 6 4 33 33 H 1.07994 * 124.58502 * 179.80297 * 8 7 6 34 34 H 0.97005 * 119.99783 * 359.72550 * 11 10 6 35 35 H 0.96998 * 120.00530 * 0.02562 * 16 14 12 36 36 H 1.09004 * 109.46924 * 300.00447 * 17 16 14 37 37 H 1.09006 * 109.46718 * 60.00131 * 17 16 14 38 38 H 1.08995 * 109.47596 * 300.00255 * 18 17 16 39 39 H 1.09001 * 109.46880 * 60.00503 * 18 17 16 40 40 H 0.96995 * 120.00556 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3510 1.5458 -0.0005 5 8 4.0921 0.5813 -0.0005 6 6 3.9108 2.8994 0.0000 7 6 3.1037 4.0994 0.0048 8 6 3.8240 5.2125 -0.0010 9 16 5.5398 4.8456 -0.0061 10 6 5.2576 3.1647 -0.0010 11 7 6.2496 2.2003 -0.0032 12 6 7.5464 2.5673 -0.0152 13 8 7.8439 3.7441 -0.0245 14 6 8.6168 1.5266 -0.0182 15 8 8.3192 0.3500 -0.0093 16 7 9.9135 1.8937 -0.0307 17 6 10.9640 0.8724 -0.0330 18 6 12.3350 1.5511 -0.0473 19 6 13.4156 0.5006 -0.0504 20 1 13.1508 -0.5464 -0.0433 21 6 14.7421 0.8761 -0.0622 22 7 15.0646 2.1511 -0.0713 23 14 16.0814 -0.4260 -0.0653 24 1 15.9394 -1.2794 -1.2722 25 1 17.4123 0.2327 -0.0793 26 1 15.9574 -1.2665 1.1526 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.0238 4.0898 0.0087 33 1 3.4106 6.2102 -0.0018 34 1 6.0117 1.2598 -0.0002 35 1 10.1514 2.8340 -0.0374 36 1 10.8733 0.2560 0.8614 37 1 10.8592 0.2455 -0.9186 38 1 12.4259 2.1679 -0.9414 39 1 12.4395 2.1777 0.8385 40 1 15.9979 2.4153 -0.0800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273080564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -130.977078 kcal Electronic energy + Delta-G solvation = -25834.653811 eV Core-core repulsion = 21741.265547 eV Total energy + Delta-G solvation = -4093.388264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27807 -40.54111 -38.84519 -37.83557 -36.61285 -35.59698 -34.71054 -32.92896 -32.05949 -30.01407 -29.47592 -26.68466 -25.37290 -23.82634 -23.14630 -21.99424 -21.45103 -21.02112 -20.23780 -18.76312 -18.31073 -17.39088 -16.86473 -16.84473 -16.46539 -16.29376 -16.08389 -15.22448 -15.00438 -14.86018 -14.58053 -14.48521 -14.41151 -13.74890 -13.56834 -13.43215 -13.17429 -12.97520 -12.58705 -12.35814 -12.28324 -12.16290 -11.93533 -11.32674 -11.31956 -11.11536 -11.08874 -10.85449 -10.74234 -10.67215 -10.46248 -9.92499 -9.59914 -9.33498 -8.85132 -8.80918 -8.55312 -8.46167 -6.13766 -4.17822 0.17369 0.87395 1.35607 1.55584 1.60900 2.13704 2.48033 2.77815 3.12206 3.28644 3.32949 3.35375 3.55956 4.34875 4.40629 4.49369 4.57435 4.61337 4.64005 4.81428 4.91854 5.23174 5.26436 5.36734 5.39532 5.56312 5.57439 5.76863 5.88669 6.06603 6.10424 6.15283 6.41948 6.58482 6.60520 7.14771 7.41559 7.49754 7.51186 7.61353 7.82281 8.04093 8.22366 8.87290 9.47374 10.97548 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002104 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.444920 B =13305.704954 C =14758.041926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.350 6.350 4 C 0.538 3.462 5 O -0.521 6.521 6 C -0.227 4.227 7 C -0.064 4.064 8 C -0.293 4.293 9 S 0.318 5.682 10 C 0.085 3.915 11 N -0.601 5.601 12 C 0.499 3.501 13 O -0.481 6.481 14 C 0.505 3.495 15 O -0.517 6.517 16 N -0.679 5.679 17 C 0.117 3.883 18 C 0.011 3.989 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.443 0.557 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.228 5.228 0.161 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.384 3.616 5 O -0.412 6.412 6 C -0.246 4.246 7 C -0.092 4.092 8 C -0.429 4.429 9 S 0.579 5.421 10 C -0.136 4.136 11 N -0.251 5.251 12 C 0.281 3.719 13 O -0.355 6.355 14 C 0.283 3.717 15 O -0.394 6.394 16 N -0.330 5.330 17 C -0.004 4.004 18 C -0.026 4.026 19 C -0.564 4.564 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.290 0.710 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.502 5.822 0.154 28.111 hybrid contribution -0.608 -1.768 0.003 1.870 sum -28.109 4.054 0.158 28.400 Atomic orbital electron populations 1.21806 0.92498 1.03070 1.03520 1.23069 0.95335 0.79903 1.02930 1.86564 1.23319 1.32410 1.84389 1.20133 0.80701 0.88474 0.72334 1.90781 1.59994 1.42367 1.48022 1.18953 0.89873 0.92458 1.23269 1.20834 1.00573 0.88821 0.98927 1.25962 0.99963 1.03170 1.13769 1.84411 1.00815 0.89370 1.67472 1.22271 0.90728 0.98738 1.01887 1.43030 1.03302 1.11877 1.66900 1.21176 0.83796 0.90141 0.76779 1.90687 1.81170 1.18167 1.45459 1.19304 0.84036 0.87884 0.80471 1.90816 1.82229 1.17398 1.48928 1.46235 1.04377 1.13008 1.69406 1.22039 0.86808 0.89831 1.01686 1.19362 0.88161 0.96748 0.98341 1.20954 0.90540 0.92845 1.52038 0.92170 1.24994 0.98867 0.95509 0.94852 1.69941 1.18205 1.15023 1.49837 0.86543 0.80584 0.81443 0.78787 1.20090 1.21210 1.20084 0.90129 0.91448 0.91441 0.91014 0.91015 0.82855 0.81087 0.71010 0.75193 0.91533 0.91526 0.95566 0.95564 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.35 -3.58 9.95 -40.97 -0.41 -3.99 16 4 C 0.54 6.64 7.91 34.05 0.27 6.91 16 5 O -0.52 -7.60 14.24 -19.37 -0.28 -7.88 16 6 C -0.23 -2.61 6.00 -104.42 -0.63 -3.24 16 7 C -0.06 -0.55 10.13 -38.97 -0.39 -0.95 16 8 C -0.29 -2.28 11.09 28.83 0.32 -1.96 16 9 S 0.32 3.23 19.95 -107.50 -2.14 1.09 16 10 C 0.08 1.05 6.97 -14.96 -0.10 0.95 16 11 N -0.60 -8.38 5.31 -12.08 -0.06 -8.44 16 12 C 0.50 7.39 7.84 -11.66 -0.09 7.30 16 13 O -0.48 -7.10 13.89 5.46 0.08 -7.02 16 14 C 0.50 8.54 7.88 -11.66 -0.09 8.44 16 15 O -0.52 -9.95 16.48 5.48 0.09 -9.86 16 16 N -0.68 -11.74 5.55 -60.78 -0.34 -12.08 16 17 C 0.12 2.37 5.61 -4.04 -0.02 2.35 16 18 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 19 C -0.53 -14.17 9.11 -34.44 -0.31 -14.49 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 23 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.44 6.55 5.64 -40.82 -0.23 6.32 16 35 H 0.41 6.56 7.94 -40.82 -0.32 6.24 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -31.19 368.12 -7.23 -38.41 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.75 Total: 5.79 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.68 Total: 7.33 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.33 Total: -45.45 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.52 Total: -28.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.14 Total: 1.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.19 -7.23 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273080564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.562 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds