Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35924 * 116.99755 * 2 1 4 4 C 1.38547 * 120.09850 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.02803 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.22342 * 0.04128 * 5 4 3 7 7 S 1.76201 * 119.90077 * 179.97438 * 6 5 4 8 8 O 1.42093 * 106.40642 * 336.45783 * 7 6 5 9 9 O 1.42102 * 106.40208 * 203.53518 * 7 6 5 10 10 N 1.65600 * 107.22090 * 90.00004 * 7 6 5 11 11 C 1.46504 * 120.00252 * 64.71919 * 10 7 6 12 12 C 1.52999 * 117.50203 * 213.75121 * 11 10 7 13 13 C 1.52995 * 117.49789 * 145.08715 * 11 10 7 14 14 C 1.38090 * 120.19733 * 0.22864 * 6 5 4 15 15 C 1.38932 * 119.96829 * 359.47825 * 14 6 5 16 16 N 1.39572 * 120.11279 * 180.24831 * 15 14 6 17 17 C 1.34771 * 120.00392 * 325.30112 * 16 15 14 18 18 O 1.21777 * 119.99601 * 4.47721 * 17 16 15 19 19 C 1.41814 * 120.00517 * 184.48383 * 17 16 15 20 20 H 1.07997 * 119.99892 * 359.97438 * 19 17 16 21 21 C 1.40134 * 120.00186 * 179.97438 * 19 17 16 22 22 N 1.30637 * 119.99938 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99991 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46676 * 60.00278 * 23 21 19 25 25 H 1.48503 * 109.46748 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47120 * 300.00020 * 23 21 19 27 27 H 1.09011 * 109.46715 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47229 * 299.99505 * 1 2 3 29 29 H 1.09000 * 109.47653 * 60.00224 * 1 2 3 30 30 H 1.08003 * 119.98115 * 359.96948 * 4 3 2 31 31 H 1.07999 * 119.88406 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99814 * 245.00104 * 10 7 6 33 33 H 1.08999 * 115.54677 * 359.42512 * 11 10 7 34 34 H 1.09001 * 117.49609 * 359.97438 * 12 11 10 35 35 H 1.09001 * 117.49839 * 145.02432 * 12 11 10 36 36 H 1.09001 * 117.50019 * 214.97822 * 13 11 10 37 37 H 1.08998 * 117.50227 * 359.97438 * 13 11 10 38 38 H 1.08005 * 120.01739 * 179.74265 * 14 6 5 39 39 H 0.97003 * 120.00119 * 145.29558 * 16 15 14 40 40 H 0.97000 * 119.99643 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2934 2.3743 0.0005 5 6 1.9224 3.6054 0.0011 6 6 3.3042 3.6815 0.0002 7 16 4.0972 5.2551 0.0002 8 8 3.1615 6.1760 -0.5433 9 8 5.3935 5.0511 -0.5450 10 7 4.3188 5.6923 1.5820 11 6 5.2085 4.9073 2.4413 12 6 4.8359 4.7852 3.9202 13 6 6.0173 5.6623 3.4980 14 6 4.0634 2.5281 -0.0059 15 6 3.4397 1.2867 -0.0003 16 7 4.2041 0.1189 -0.0013 17 6 5.3730 0.0791 -0.6710 18 8 5.8021 1.0849 -1.2070 19 6 6.1031 -1.1339 -0.7518 20 1 5.7227 -2.0258 -0.2762 21 6 7.3182 -1.1753 -1.4486 22 7 7.7781 -0.0966 -2.0243 23 14 8.2803 -2.7730 -1.5543 24 1 7.4493 -3.8080 -2.2203 25 1 9.5204 -2.5529 -2.3410 26 1 8.6356 -3.2283 -0.1862 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2147 2.3193 0.0005 31 1 1.3335 4.5106 0.0019 32 1 3.8563 6.4659 1.9407 33 1 5.6793 4.0456 1.9681 34 1 3.9289 5.2894 4.2539 35 1 5.0618 3.8433 4.4200 36 1 7.0199 5.2970 3.7204 37 1 5.8877 6.7431 3.5537 38 1 5.1416 2.5909 -0.0108 39 1 3.8942 -0.6641 0.4801 40 1 8.6190 -0.1254 -2.5069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274598460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -87.004217 kcal Electronic energy + Delta-G solvation = -27780.229536 eV Core-core repulsion = 23688.748079 eV Total energy + Delta-G solvation = -4091.481457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13330 -37.98996 -37.77288 -36.89717 -36.68541 -35.54071 -33.61548 -32.43167 -32.09855 -30.17040 -29.37711 -27.33520 -26.37284 -22.65167 -22.51101 -22.39100 -22.04034 -20.18867 -19.37845 -18.16480 -17.73859 -17.38206 -16.94806 -16.42677 -15.93692 -15.69378 -15.51519 -15.11174 -14.88795 -14.52182 -14.19031 -13.70996 -13.66864 -13.10678 -12.95101 -12.83014 -12.47962 -12.28775 -12.14495 -11.98326 -11.92237 -11.71591 -11.64662 -11.60608 -11.42010 -11.15120 -11.09424 -10.99645 -10.62570 -10.60062 -10.44980 -10.36443 -9.47550 -9.07792 -8.89738 -8.54986 -7.72468 -7.10381 -6.35892 -4.89820 0.64245 1.26359 1.71935 3.07513 3.13240 3.13811 3.15484 3.35405 3.72570 3.84274 3.98056 4.08716 4.40918 4.48540 4.63310 4.78384 4.89625 4.90434 4.94390 5.07227 5.13377 5.19074 5.27537 5.44624 5.56640 5.59557 5.72138 5.81268 5.87835 6.02747 6.11590 6.19120 6.28831 6.42110 6.50231 6.93794 7.04028 7.24915 7.38309 7.82143 8.00623 8.14288 8.80776 9.25956 10.38442 10.57615 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.004446 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.270353 B = 6296.742107 C = 7885.533723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.123 3.877 4 C -0.210 4.210 5 C -0.028 4.028 6 C -0.688 4.688 7 S 2.698 3.302 8 O -0.968 6.968 9 O -0.942 6.942 10 N -1.090 6.090 11 C 0.087 3.913 12 C -0.190 4.190 13 C -0.187 4.187 14 C -0.003 4.003 15 C 0.151 3.849 16 N -0.693 5.693 17 C 0.540 3.460 18 O -0.563 6.563 19 C -0.536 4.536 20 H 0.070 0.930 21 C 0.087 3.913 22 N -0.743 5.743 23 Si 0.913 3.087 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.414 0.586 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 5.921 10.987 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.073 3.927 4 C -0.230 4.230 5 C -0.049 4.049 6 C -0.778 4.778 7 S 2.790 3.210 8 O -0.959 6.959 9 O -0.931 6.931 10 N -0.845 5.845 11 C -0.021 4.021 12 C -0.230 4.230 13 C -0.227 4.227 14 C -0.026 4.026 15 C 0.051 3.949 16 N -0.337 5.337 17 C 0.350 3.650 18 O -0.447 6.447 19 C -0.571 4.571 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.370 5.370 23 Si 0.737 3.263 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.191 1.191 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.248 0.752 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.186 0.814 39 H 0.230 0.770 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.094 6.779 9.606 15.495 hybrid contribution -0.721 -1.454 0.602 1.731 sum -10.815 5.325 10.207 15.796 Atomic orbital electron populations 1.23039 0.78746 1.03744 1.01183 1.86090 1.21036 1.26690 1.88408 1.19243 0.91281 0.84534 0.97598 1.20973 0.99496 0.91890 1.10623 1.20376 0.92081 0.97554 0.94896 1.30462 1.04539 1.20523 1.22277 1.01709 0.73905 0.73568 0.71848 1.93550 1.64519 1.61999 1.75816 1.93660 1.38402 1.85943 1.75128 1.55233 1.58238 1.39995 1.31018 1.21375 0.96015 0.97376 0.87341 1.23405 0.99522 1.02440 0.97624 1.23372 0.96975 0.98975 1.03353 1.21175 1.01713 0.88551 0.91116 1.17362 0.86563 0.89389 1.01613 1.44052 1.23599 1.11409 1.54666 1.17155 0.78535 0.90742 0.78604 1.90681 1.67877 1.36278 1.49828 1.19975 1.05845 0.95844 1.35431 0.91182 1.25763 0.97121 0.97340 0.93383 1.70004 1.17134 1.27973 1.21913 0.86336 0.78900 0.81913 0.79119 1.19119 1.20317 1.19057 0.88360 0.92808 0.92695 0.85176 0.84961 0.75239 0.84139 0.88478 0.87875 0.87780 0.88447 0.81415 0.77019 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.89 10.06 -19.50 -0.20 -5.08 16 3 C 0.12 2.16 6.71 -38.97 -0.26 1.90 16 4 C -0.21 -3.14 9.04 -39.46 -0.36 -3.50 16 5 C -0.03 -0.43 9.52 -39.52 -0.38 -0.81 16 6 C -0.69 -12.25 5.94 -39.58 -0.24 -12.49 16 7 S 2.70 44.61 5.71 -107.50 -0.61 43.99 16 8 O -0.97 -16.90 17.27 -57.17 -0.99 -17.88 16 9 O -0.94 -19.78 17.03 -57.17 -0.97 -20.75 16 10 N -1.09 -13.28 6.04 -4.89 -0.03 -13.31 16 11 C 0.09 1.06 6.46 -67.93 -0.44 0.62 16 12 C -0.19 -1.82 10.46 -26.69 -0.28 -2.10 16 13 C -0.19 -1.84 10.46 -26.69 -0.28 -2.12 16 14 C 0.00 -0.06 8.16 -39.38 -0.32 -0.38 16 15 C 0.15 3.20 6.32 -83.58 -0.53 2.67 16 16 N -0.69 -15.77 5.16 -12.30 -0.06 -15.83 16 17 C 0.54 14.95 7.42 -14.90 -0.11 14.84 16 18 O -0.56 -17.56 12.29 5.12 0.06 -17.49 16 19 C -0.54 -14.54 9.31 -37.50 -0.35 -14.88 16 20 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 21 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 22 N -0.74 -21.54 11.73 55.55 0.65 -20.89 16 23 Si 0.91 19.34 29.56 -169.99 -5.02 14.31 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 30 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 31 H 0.13 1.70 7.61 -52.49 -0.40 1.30 16 32 H 0.41 3.82 8.96 -34.47 -0.31 3.51 16 33 H 0.14 1.94 8.11 -51.93 -0.42 1.52 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.17 4.05 5.74 -52.48 -0.30 3.75 16 39 H 0.40 7.95 8.53 -40.82 -0.35 7.60 16 40 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -37.40 358.70 -8.97 -46.38 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.56 Total: 13.88 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.64 Total: -12.72 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.56 Total: -50.03 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -2.09 Total: -61.21 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.61 Total: 43.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.40 -8.97 -46.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274598460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.629 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds