Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35924 * 116.99755 * 2 1 4 4 C 1.38547 * 120.09850 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.02803 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.22342 * 0.04128 * 5 4 3 7 7 S 1.76201 * 119.90077 * 179.97438 * 6 5 4 8 8 O 1.42093 * 106.40642 * 336.45783 * 7 6 5 9 9 O 1.42102 * 106.40208 * 203.53518 * 7 6 5 10 10 N 1.65600 * 107.22090 * 90.00004 * 7 6 5 11 11 C 1.46504 * 120.00252 * 64.71919 * 10 7 6 12 12 C 1.52999 * 117.50203 * 213.75121 * 11 10 7 13 13 C 1.52995 * 117.49789 * 145.08715 * 11 10 7 14 14 C 1.38090 * 120.19733 * 0.22864 * 6 5 4 15 15 C 1.38932 * 119.96829 * 359.47825 * 14 6 5 16 16 N 1.39572 * 120.11279 * 180.24831 * 15 14 6 17 17 C 1.34771 * 120.00392 * 325.30112 * 16 15 14 18 18 O 1.21777 * 119.99601 * 4.47721 * 17 16 15 19 19 C 1.41814 * 120.00517 * 184.48383 * 17 16 15 20 20 H 1.07997 * 119.99892 * 359.97438 * 19 17 16 21 21 C 1.40134 * 120.00186 * 179.97438 * 19 17 16 22 22 N 1.30637 * 119.99938 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 119.99991 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46676 * 60.00278 * 23 21 19 25 25 H 1.48503 * 109.46748 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47120 * 300.00020 * 23 21 19 27 27 H 1.09011 * 109.46715 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47229 * 299.99505 * 1 2 3 29 29 H 1.09000 * 109.47653 * 60.00224 * 1 2 3 30 30 H 1.08003 * 119.98115 * 359.96948 * 4 3 2 31 31 H 1.07999 * 119.88406 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99814 * 245.00104 * 10 7 6 33 33 H 1.08999 * 115.54677 * 359.42512 * 11 10 7 34 34 H 1.09001 * 117.49609 * 359.97438 * 12 11 10 35 35 H 1.09001 * 117.49839 * 145.02432 * 12 11 10 36 36 H 1.09001 * 117.50019 * 214.97822 * 13 11 10 37 37 H 1.08998 * 117.50227 * 359.97438 * 13 11 10 38 38 H 1.08005 * 120.01739 * 179.74265 * 14 6 5 39 39 H 0.97003 * 120.00119 * 145.29558 * 16 15 14 40 40 H 0.97000 * 119.99643 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2934 2.3743 0.0005 5 6 1.9224 3.6054 0.0011 6 6 3.3042 3.6815 0.0002 7 16 4.0972 5.2551 0.0002 8 8 3.1615 6.1760 -0.5433 9 8 5.3935 5.0511 -0.5450 10 7 4.3188 5.6923 1.5820 11 6 5.2085 4.9073 2.4413 12 6 4.8359 4.7852 3.9202 13 6 6.0173 5.6623 3.4980 14 6 4.0634 2.5281 -0.0059 15 6 3.4397 1.2867 -0.0003 16 7 4.2041 0.1189 -0.0013 17 6 5.3730 0.0791 -0.6710 18 8 5.8021 1.0849 -1.2070 19 6 6.1031 -1.1339 -0.7518 20 1 5.7227 -2.0258 -0.2762 21 6 7.3182 -1.1753 -1.4486 22 7 7.7781 -0.0966 -2.0243 23 14 8.2803 -2.7730 -1.5543 24 1 7.4493 -3.8080 -2.2203 25 1 9.5204 -2.5529 -2.3410 26 1 8.6356 -3.2283 -0.1862 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2147 2.3193 0.0005 31 1 1.3335 4.5106 0.0019 32 1 3.8563 6.4659 1.9407 33 1 5.6793 4.0456 1.9681 34 1 3.9289 5.2894 4.2539 35 1 5.0618 3.8433 4.4200 36 1 7.0199 5.2970 3.7204 37 1 5.8877 6.7431 3.5537 38 1 5.1416 2.5909 -0.0108 39 1 3.8942 -0.6641 0.4801 40 1 8.6190 -0.1254 -2.5069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274598460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -118.070088 kcal Electronic energy + Delta-G solvation = -27781.576653 eV Core-core repulsion = 23688.748079 eV Total energy + Delta-G solvation = -4092.828574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53810 -39.66770 -38.74786 -38.29592 -38.17413 -37.01190 -35.44323 -34.49539 -33.12045 -31.53541 -30.95379 -28.60454 -28.05075 -24.20622 -23.81394 -23.21225 -23.06075 -21.93860 -20.70342 -19.78469 -19.05465 -18.93668 -18.30755 -17.77851 -17.47238 -17.06611 -16.82903 -16.63124 -16.09627 -15.86608 -15.61288 -15.22454 -15.11510 -14.57613 -14.29847 -14.27567 -13.89226 -13.74993 -13.35731 -13.32196 -13.22414 -13.15914 -13.07457 -13.00895 -12.77079 -12.69407 -12.34717 -12.21904 -12.19328 -12.06707 -11.99139 -11.36335 -11.17630 -10.86863 -10.05064 -9.98014 -9.73646 -8.77335 -8.37825 -7.02464 -0.67438 -0.13489 0.30116 1.38651 1.41386 1.54839 1.90768 2.18796 2.22468 2.29543 2.49757 2.72627 2.88906 2.96604 3.32595 3.61301 3.76264 3.85694 3.95324 3.99941 4.08306 4.11226 4.25582 4.39020 4.41998 4.50784 4.68341 4.76263 4.81504 4.88807 5.04546 5.05592 5.08498 5.21024 5.23716 5.27511 5.59442 5.86044 6.05316 6.08087 6.12185 6.46002 6.73062 7.36136 8.37442 8.56217 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.004446 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.270353 B = 6296.742107 C = 7885.533723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.137 3.863 4 C -0.200 4.200 5 C -0.014 4.014 6 C -0.698 4.698 7 S 2.720 3.280 8 O -0.976 6.976 9 O -0.997 6.997 10 N -1.068 6.068 11 C 0.049 3.951 12 C -0.168 4.168 13 C -0.177 4.177 14 C -0.024 4.024 15 C 0.105 3.895 16 N -0.688 5.688 17 C 0.527 3.473 18 O -0.611 6.611 19 C -0.563 4.563 20 H 0.090 0.910 21 C 0.031 3.969 22 N -0.801 5.801 23 Si 1.003 2.997 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.250 1.250 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.180 0.820 31 H 0.170 0.830 32 H 0.431 0.569 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.406 0.594 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.046 5.444 12.717 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.087 3.913 4 C -0.219 4.219 5 C -0.034 4.034 6 C -0.787 4.787 7 S 2.811 3.189 8 O -0.966 6.966 9 O -0.986 6.986 10 N -0.828 5.828 11 C -0.059 4.059 12 C -0.208 4.208 13 C -0.216 4.216 14 C -0.047 4.047 15 C 0.006 3.994 16 N -0.333 5.333 17 C 0.336 3.664 18 O -0.499 6.499 19 C -0.598 4.598 20 H 0.109 0.891 21 C -0.187 4.187 22 N -0.429 5.429 23 Si 0.821 3.179 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.174 1.174 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.197 0.803 31 H 0.188 0.812 32 H 0.269 0.731 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.241 0.759 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.158 6.312 11.375 18.504 hybrid contribution -0.012 -1.238 0.156 1.248 sum -13.170 5.074 11.531 18.225 Atomic orbital electron populations 1.23501 0.75495 1.06041 1.02961 1.86083 1.24311 1.25855 1.87793 1.19240 0.90005 0.86337 0.95694 1.21481 1.01702 0.90300 1.08437 1.20925 0.91039 0.99490 0.91959 1.30514 1.05782 1.19560 1.22846 1.00812 0.72637 0.72896 0.72551 1.93521 1.64308 1.61878 1.76878 1.93598 1.41273 1.86583 1.77188 1.54659 1.58322 1.40436 1.29413 1.21399 0.98127 0.97867 0.88539 1.23505 1.00171 1.02690 0.94405 1.23508 0.97291 1.00041 1.00786 1.20776 1.00062 0.90348 0.93467 1.17617 0.88424 0.88463 1.04866 1.43508 1.22743 1.12615 1.54475 1.17509 0.79787 0.90495 0.78584 1.90650 1.69591 1.37736 1.51898 1.20521 1.06746 0.96431 1.36116 0.89140 1.27060 0.97964 1.01674 0.92019 1.70184 1.18041 1.31320 1.23344 0.85001 0.76961 0.76067 0.79871 1.17774 1.19767 1.17416 0.86113 0.90271 0.91434 0.80251 0.81217 0.73097 0.87248 0.86213 0.87536 0.87573 0.86552 0.85876 0.75890 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -9.69 10.06 -92.70 -0.93 -10.62 16 3 C 0.14 4.67 6.71 22.67 0.15 4.82 16 4 C -0.20 -5.31 9.04 22.35 0.20 -5.11 16 5 C -0.01 -0.39 9.52 22.31 0.21 -0.18 16 6 C -0.70 -25.39 5.94 22.27 0.13 -25.25 16 7 S 2.72 92.91 5.71 -56.49 -0.32 92.58 16 8 O -0.98 -33.35 17.27 -128.00 -2.21 -35.56 16 9 O -1.00 -45.49 17.03 -128.00 -2.18 -47.67 16 10 N -1.07 -25.88 6.04 -169.39 -1.02 -26.90 16 11 C 0.05 1.22 6.46 44.99 0.29 1.51 16 12 C -0.17 -2.98 10.46 30.62 0.32 -2.66 16 13 C -0.18 -3.32 10.46 30.62 0.32 -3.00 16 14 C -0.02 -1.08 8.16 22.40 0.18 -0.90 16 15 C 0.10 4.62 6.32 38.40 0.24 4.86 16 16 N -0.69 -33.13 5.16 -311.02 -1.60 -34.74 16 17 C 0.53 31.16 7.42 85.13 0.63 31.79 16 18 O -0.61 -41.43 12.29 -4.60 -0.06 -41.48 16 19 C -0.56 -31.83 9.31 23.62 0.22 -31.61 16 20 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 21 C 0.03 1.72 5.50 85.33 0.47 2.19 16 22 N -0.80 -49.13 11.73 21.85 0.26 -48.88 16 23 Si 1.00 40.32 29.56 68.60 2.03 42.34 16 24 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 25 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 26 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 27 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.08 0.94 7.66 -2.39 -0.02 0.93 16 29 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 30 H 0.18 2.98 6.30 -2.91 -0.02 2.97 16 31 H 0.17 3.60 7.61 -2.91 -0.02 3.58 16 32 H 0.43 7.22 8.96 -96.75 -0.87 6.35 16 33 H 0.11 3.45 8.11 -2.39 -0.02 3.43 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.12 6.72 5.74 -2.91 -0.02 6.70 16 39 H 0.41 17.02 8.53 -92.71 -0.79 16.23 16 40 H 0.28 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -89.62 358.70 -2.10 -91.72 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -0.54 Total: 41.39 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.49 Total: -22.18 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -2.37 Total: -110.51 kcal Atomic # 8 Polarization: -129.96 SS G_CDS: -5.38 Total: -135.34 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 92.91 SS G_CDS: -0.32 Total: 92.58 kcal Total: -89.62 -2.10 -91.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274598460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.352 kcal (2) G-P(sol) polarization free energy of solvation -89.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds