Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35911 * 116.99852 * 2 1 4 4 C 1.38885 * 119.97129 * 0.02865 * 3 2 1 5 5 C 1.37941 * 120.02879 * 180.02562 * 4 3 2 6 6 C 1.39123 * 119.97393 * 359.94585 * 5 4 3 7 7 N 1.39510 * 120.03340 * 180.29782 * 6 5 4 8 8 C 1.34778 * 119.99984 * 324.40350 * 7 6 5 9 9 O 1.21772 * 120.00067 * 5.15784 * 8 7 6 10 10 C 1.41765 * 120.00038 * 185.16640 * 8 7 6 11 11 H 1.07999 * 120.00279 * 5.36068 * 10 8 7 12 12 C 1.40138 * 120.00220 * 185.36478 * 10 8 7 13 13 N 1.30624 * 119.99860 * 5.36672 * 12 10 8 14 14 Si 1.86804 * 120.00256 * 185.36822 * 12 10 8 15 15 H 1.48495 * 109.47326 * 94.99547 * 14 12 10 16 16 H 1.48500 * 109.47089 * 214.99707 * 14 12 10 17 17 H 1.48504 * 109.46940 * 334.99711 * 14 12 10 18 18 C 1.39084 * 119.93939 * 0.02966 * 6 5 4 19 19 C 1.37990 * 119.97222 * 359.97438 * 18 6 5 20 20 S 1.76202 * 119.98507 * 180.02562 * 19 18 6 21 21 O 1.42101 * 106.40274 * 227.91107 * 20 19 18 22 22 O 1.42104 * 106.40365 * 0.83223 * 20 19 18 23 23 N 1.65603 * 107.21649 * 114.37099 * 20 19 18 24 24 C 1.46500 * 120.00131 * 297.30276 * 23 20 19 25 25 C 1.52990 * 117.50129 * 211.09423 * 24 23 20 26 26 C 1.52992 * 60.00208 * 252.51095 * 25 24 23 27 27 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47225 * 299.99385 * 1 2 3 29 29 H 1.08999 * 109.47903 * 59.99491 * 1 2 3 30 30 H 1.08007 * 119.98778 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.01409 * 180.02562 * 5 4 3 32 32 H 0.97003 * 120.00217 * 144.39542 * 7 6 5 33 33 H 0.97010 * 120.00092 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.01733 * 179.97438 * 18 6 5 35 35 H 0.97001 * 119.99923 * 117.30867 * 23 20 19 36 36 H 1.09001 * 115.54830 * 356.80447 * 24 23 20 37 37 H 1.09007 * 117.50143 * 0.02562 * 25 24 23 38 38 H 1.09005 * 117.50210 * 145.02233 * 25 24 23 39 39 H 1.09000 * 117.50090 * 252.51424 * 26 25 24 40 40 H 1.08997 * 117.50208 * 107.48864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2889 2.3754 0.0006 5 6 1.9139 3.6051 0.0001 6 6 3.3032 3.6787 0.0001 7 7 3.9365 4.9217 0.0058 8 6 3.3966 5.9563 -0.6686 9 8 2.3101 5.8332 -1.2044 10 6 4.0938 7.1877 -0.7542 11 1 5.0936 7.2712 -0.3546 12 6 3.4856 8.2967 -1.3575 13 7 2.2405 8.2276 -1.7463 14 14 4.4554 9.8739 -1.6056 15 1 5.0308 9.8911 -2.9744 16 1 3.5542 11.0415 -1.4327 17 1 5.5521 9.9429 -0.6067 18 6 4.0601 2.5119 0.0000 19 6 3.4325 1.2830 0.0004 20 16 4.3911 -0.1955 0.0010 21 8 3.8427 -1.0296 -1.0103 22 8 5.7531 0.2094 0.0207 23 7 4.1100 -0.9613 1.4422 24 6 4.4853 -0.3134 2.7014 25 6 4.8998 -1.2167 3.8645 26 6 3.5493 -0.4985 3.8974 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 0.2104 2.3181 0.0015 31 1 1.3249 4.5104 0.0010 32 1 4.7654 5.0415 0.4952 33 1 1.8195 8.9953 -2.1643 34 1 5.1387 2.5675 -0.0004 35 1 3.6970 -1.8389 1.4525 36 1 4.9929 0.6462 2.6033 37 1 4.8938 -2.2931 3.6928 38 1 5.6804 -0.8515 4.5320 39 1 3.4414 0.3392 4.5864 40 1 2.6544 -1.1023 3.7474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274711985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -88.490603 kcal Electronic energy + Delta-G solvation = -27566.932732 eV Core-core repulsion = 23475.386820 eV Total energy + Delta-G solvation = -4091.545912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07396 -38.50181 -37.90656 -36.96368 -36.42684 -35.66060 -33.37077 -32.46995 -32.18925 -31.07499 -28.99948 -27.38709 -26.10223 -23.20964 -22.55984 -22.27682 -21.92220 -20.42970 -19.43776 -18.31548 -17.77249 -17.50636 -16.89117 -16.50633 -16.03337 -15.72387 -15.46344 -15.17462 -14.94160 -14.61131 -14.14467 -14.08819 -13.71252 -13.11413 -13.08304 -12.88511 -12.46283 -12.26460 -12.18672 -12.01278 -11.94293 -11.83971 -11.76159 -11.73659 -11.67622 -11.35174 -11.23273 -10.97105 -10.71138 -10.61791 -10.41539 -10.39003 -9.27032 -9.18827 -9.03325 -8.86742 -7.81249 -7.09126 -6.47437 -4.97616 0.56480 1.23177 1.72147 3.00213 3.01585 3.09486 3.12590 3.26198 3.62168 3.79505 3.91430 3.99583 4.34392 4.47206 4.57696 4.67510 4.75683 4.79014 4.90955 4.97755 5.13846 5.18160 5.38993 5.43674 5.46699 5.59139 5.64731 5.68219 5.85997 5.88919 5.98503 6.04719 6.10783 6.58916 6.82548 6.84617 6.86987 7.17171 7.33243 7.76082 7.94213 8.08124 8.73321 9.18696 10.29152 10.48163 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003147 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.712164 B = 8895.325362 C = 9484.785596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.182 3.818 4 C -0.207 4.207 5 C -0.032 4.032 6 C 0.145 3.855 7 N -0.701 5.701 8 C 0.546 3.454 9 O -0.573 6.573 10 C -0.538 4.538 11 H 0.072 0.928 12 C 0.089 3.911 13 N -0.749 5.749 14 Si 0.914 3.086 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.054 4.054 19 C -0.684 4.684 20 S 2.709 3.291 21 O -0.953 6.953 22 O -0.963 6.963 23 N -1.085 6.085 24 C 0.089 3.911 25 C -0.187 4.187 26 C -0.191 4.191 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.416 0.584 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -15.702 10.650 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.134 3.866 4 C -0.227 4.227 5 C -0.053 4.053 6 C 0.046 3.954 7 N -0.346 5.346 8 C 0.355 3.645 9 O -0.457 6.457 10 C -0.573 4.573 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.376 5.376 14 Si 0.738 3.262 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.077 4.077 19 C -0.773 4.773 20 S 2.799 3.201 21 O -0.943 6.943 22 O -0.953 6.953 23 N -0.840 5.840 24 C -0.019 4.019 25 C -0.227 4.227 26 C -0.230 4.230 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.251 0.749 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.381 -15.890 9.442 18.488 hybrid contribution -0.183 1.190 0.352 1.254 sum -0.565 -14.701 9.794 17.674 Atomic orbital electron populations 1.23063 0.77884 1.03847 1.01747 1.86007 1.21971 1.26669 1.88382 1.18151 0.90228 0.84507 0.93749 1.21222 0.99885 0.91909 1.09641 1.21740 0.94160 0.98198 0.91238 1.17920 0.91899 0.86508 0.99115 1.44103 1.27905 1.08219 1.54369 1.17070 0.86099 0.82816 0.78494 1.90612 1.22395 1.82295 1.50409 1.20051 1.02602 0.94616 1.40046 0.90957 1.25760 0.94499 1.00096 0.93045 1.69975 1.11004 1.30075 1.26544 0.86245 0.80071 0.80321 0.79560 1.19491 1.20227 1.18599 1.20537 0.99911 0.89420 0.97797 1.29497 1.03447 1.18202 1.26145 1.01374 0.73501 0.73243 0.71943 1.93589 1.79927 1.66422 1.54361 1.93565 1.32304 1.83392 1.86056 1.55112 1.77882 1.30353 1.20692 1.21288 1.02622 0.97968 0.80039 1.23352 0.98668 0.99187 1.01451 1.23397 0.94487 1.03737 1.01421 0.88211 0.92489 0.92259 0.85117 0.82714 0.77183 0.91557 0.83815 0.74931 0.84506 0.88428 0.87922 0.88000 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.45 9.25 -30.13 -0.28 -4.73 16 3 C 0.18 2.95 6.64 -39.12 -0.26 2.69 16 4 C -0.21 -3.46 9.03 -39.45 -0.36 -3.82 16 5 C -0.03 -0.65 8.69 -39.36 -0.34 -0.99 16 6 C 0.15 2.94 6.29 -83.72 -0.53 2.41 16 7 N -0.70 -15.22 5.31 -12.40 -0.07 -15.29 16 8 C 0.55 14.62 7.40 -14.91 -0.11 14.51 16 9 O -0.57 -17.15 12.37 5.12 0.06 -17.09 16 10 C -0.54 -14.24 9.31 -37.52 -0.35 -14.59 16 11 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 12 C 0.09 2.33 5.48 -17.35 -0.10 2.24 16 13 N -0.75 -20.97 11.78 55.55 0.65 -20.32 16 14 Si 0.91 18.95 29.56 -169.99 -5.03 13.92 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 18 C -0.05 -0.95 9.47 -39.36 -0.37 -1.32 16 19 C -0.68 -11.31 5.85 -39.45 -0.23 -11.54 16 20 S 2.71 40.47 5.30 -107.50 -0.57 39.89 16 21 O -0.95 -16.67 17.26 -62.75 -1.08 -17.76 16 22 O -0.96 -16.23 16.77 -57.17 -0.96 -17.19 16 23 N -1.09 -11.82 6.04 -4.90 -0.03 -11.85 16 24 C 0.09 0.87 6.46 -67.94 -0.44 0.43 16 25 C -0.19 -1.42 10.46 -26.74 -0.28 -1.70 16 26 C -0.19 -1.52 10.46 -26.74 -0.28 -1.80 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.49 7.66 -51.92 -0.40 0.09 16 29 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.13 1.81 6.29 -52.48 -0.33 1.48 16 31 H 0.16 3.50 6.23 -52.48 -0.33 3.18 16 32 H 0.39 7.27 8.78 -40.82 -0.36 6.91 16 33 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 34 H 0.14 2.32 7.33 -52.49 -0.38 1.93 16 35 H 0.42 3.68 8.96 -34.47 -0.31 3.37 16 36 H 0.14 1.33 8.11 -51.93 -0.42 0.91 16 37 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -35.87 358.17 -9.13 -45.00 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -4.59 Total: 12.19 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.65 Total: -12.19 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.56 Total: -47.45 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.26 Total: -56.76 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 40.47 SS G_CDS: -0.57 Total: 39.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.87 -9.13 -45.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274711985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.491 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds