Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35911 * 116.99852 * 2 1 4 4 C 1.38885 * 119.97129 * 0.02865 * 3 2 1 5 5 C 1.37941 * 120.02879 * 180.02562 * 4 3 2 6 6 C 1.39123 * 119.97393 * 359.94585 * 5 4 3 7 7 N 1.39510 * 120.03340 * 180.29782 * 6 5 4 8 8 C 1.34778 * 119.99984 * 324.40350 * 7 6 5 9 9 O 1.21772 * 120.00067 * 5.15784 * 8 7 6 10 10 C 1.41765 * 120.00038 * 185.16640 * 8 7 6 11 11 H 1.07999 * 120.00279 * 5.36068 * 10 8 7 12 12 C 1.40138 * 120.00220 * 185.36478 * 10 8 7 13 13 N 1.30624 * 119.99860 * 5.36672 * 12 10 8 14 14 Si 1.86804 * 120.00256 * 185.36822 * 12 10 8 15 15 H 1.48495 * 109.47326 * 94.99547 * 14 12 10 16 16 H 1.48500 * 109.47089 * 214.99707 * 14 12 10 17 17 H 1.48504 * 109.46940 * 334.99711 * 14 12 10 18 18 C 1.39084 * 119.93939 * 0.02966 * 6 5 4 19 19 C 1.37990 * 119.97222 * 359.97438 * 18 6 5 20 20 S 1.76202 * 119.98507 * 180.02562 * 19 18 6 21 21 O 1.42101 * 106.40274 * 227.91107 * 20 19 18 22 22 O 1.42104 * 106.40365 * 0.83223 * 20 19 18 23 23 N 1.65603 * 107.21649 * 114.37099 * 20 19 18 24 24 C 1.46500 * 120.00131 * 297.30276 * 23 20 19 25 25 C 1.52990 * 117.50129 * 211.09423 * 24 23 20 26 26 C 1.52992 * 60.00208 * 252.51095 * 25 24 23 27 27 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47225 * 299.99385 * 1 2 3 29 29 H 1.08999 * 109.47903 * 59.99491 * 1 2 3 30 30 H 1.08007 * 119.98778 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.01409 * 180.02562 * 5 4 3 32 32 H 0.97003 * 120.00217 * 144.39542 * 7 6 5 33 33 H 0.97010 * 120.00092 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.01733 * 179.97438 * 18 6 5 35 35 H 0.97001 * 119.99923 * 117.30867 * 23 20 19 36 36 H 1.09001 * 115.54830 * 356.80447 * 24 23 20 37 37 H 1.09007 * 117.50143 * 0.02562 * 25 24 23 38 38 H 1.09005 * 117.50210 * 145.02233 * 25 24 23 39 39 H 1.09000 * 117.50090 * 252.51424 * 26 25 24 40 40 H 1.08997 * 117.50208 * 107.48864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2889 2.3754 0.0006 5 6 1.9139 3.6051 0.0001 6 6 3.3032 3.6787 0.0001 7 7 3.9365 4.9217 0.0058 8 6 3.3966 5.9563 -0.6686 9 8 2.3101 5.8332 -1.2044 10 6 4.0938 7.1877 -0.7542 11 1 5.0936 7.2712 -0.3546 12 6 3.4856 8.2967 -1.3575 13 7 2.2405 8.2276 -1.7463 14 14 4.4554 9.8739 -1.6056 15 1 5.0308 9.8911 -2.9744 16 1 3.5542 11.0415 -1.4327 17 1 5.5521 9.9429 -0.6067 18 6 4.0601 2.5119 0.0000 19 6 3.4325 1.2830 0.0004 20 16 4.3911 -0.1955 0.0010 21 8 3.8427 -1.0296 -1.0103 22 8 5.7531 0.2094 0.0207 23 7 4.1100 -0.9613 1.4422 24 6 4.4853 -0.3134 2.7014 25 6 4.8998 -1.2167 3.8645 26 6 3.5493 -0.4985 3.8974 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 0.2104 2.3181 0.0015 31 1 1.3249 4.5104 0.0010 32 1 4.7654 5.0415 0.4952 33 1 1.8195 8.9953 -2.1643 34 1 5.1387 2.5675 -0.0004 35 1 3.6970 -1.8389 1.4525 36 1 4.9929 0.6462 2.6033 37 1 4.8938 -2.2931 3.6928 38 1 5.6804 -0.8515 4.5320 39 1 3.4414 0.3392 4.5864 40 1 2.6544 -1.1023 3.7474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274711985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = -116.659240 kcal Electronic energy + Delta-G solvation = -27568.154216 eV Core-core repulsion = 23475.386820 eV Total energy + Delta-G solvation = -4092.767395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43498 -40.09021 -38.67855 -38.29722 -37.92904 -36.95818 -35.15452 -34.43163 -33.04996 -32.47287 -30.51339 -28.77336 -27.62790 -24.64846 -23.50136 -23.14845 -22.95592 -22.09551 -20.63259 -19.65752 -19.44436 -18.74261 -18.24773 -17.80117 -17.42964 -16.99583 -16.75761 -16.63595 -16.01805 -15.80872 -15.56643 -15.39928 -15.10269 -14.77773 -14.64705 -13.88840 -13.76927 -13.74324 -13.29704 -13.26418 -13.15143 -13.09579 -13.02802 -13.00104 -12.86954 -12.73181 -12.68939 -12.29585 -12.22690 -12.01771 -11.73993 -11.27889 -11.03869 -10.66686 -10.44418 -9.98597 -9.83297 -8.68531 -8.42110 -7.02959 -0.63337 -0.17919 0.29697 1.38438 1.40109 1.56384 1.91800 2.13840 2.20441 2.27364 2.52556 2.68400 2.92366 3.03182 3.41024 3.59982 3.75415 3.88346 3.95574 4.06407 4.11667 4.15465 4.27175 4.38613 4.39400 4.45262 4.56850 4.70057 4.74286 4.88275 5.11314 5.16464 5.20396 5.30860 5.31557 5.32946 5.40551 5.86758 6.08404 6.08931 6.12676 6.34540 6.72496 7.35532 8.34429 8.52791 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003147 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.712164 B = 8895.325362 C = 9484.785596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.194 3.806 4 C -0.202 4.202 5 C -0.053 4.053 6 C 0.112 3.888 7 N -0.695 5.695 8 C 0.532 3.468 9 O -0.616 6.616 10 C -0.566 4.566 11 H 0.091 0.909 12 C 0.035 3.965 13 N -0.800 5.800 14 Si 1.000 3.000 15 H -0.266 1.266 16 H -0.269 1.269 17 H -0.246 1.246 18 C -0.044 4.044 19 C -0.692 4.692 20 S 2.732 3.268 21 O -0.978 6.978 22 O -0.982 6.982 23 N -1.069 6.069 24 C 0.056 3.944 25 C -0.172 4.172 26 C -0.184 4.184 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.121 0.879 32 H 0.408 0.592 33 H 0.280 0.720 34 H 0.157 0.843 35 H 0.428 0.572 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -17.098 11.984 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.231 6.231 3 C 0.145 3.855 4 C -0.222 4.222 5 C -0.074 4.074 6 C 0.014 3.986 7 N -0.341 5.341 8 C 0.342 3.658 9 O -0.504 6.504 10 C -0.600 4.600 11 H 0.109 0.891 12 C -0.184 4.184 13 N -0.428 5.428 14 Si 0.819 3.181 15 H -0.191 1.191 16 H -0.194 1.194 17 H -0.169 1.169 18 C -0.066 4.066 19 C -0.779 4.779 20 S 2.821 3.179 21 O -0.968 6.968 22 O -0.972 6.972 23 N -0.828 5.828 24 C -0.052 4.052 25 C -0.212 4.212 26 C -0.223 4.223 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.139 0.861 32 H 0.244 0.756 33 H 0.090 0.910 34 H 0.175 0.825 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.328 -17.336 10.811 20.433 hybrid contribution -0.494 1.369 0.035 1.455 sum -0.166 -15.967 10.846 19.303 Atomic orbital electron populations 1.23504 0.75490 1.06365 1.02678 1.86037 1.24376 1.25088 1.87646 1.18218 0.90245 0.85162 0.91886 1.21397 1.01352 0.90825 1.08612 1.21535 0.94208 0.98349 0.93319 1.18092 0.92274 0.86532 1.01686 1.43633 1.28266 1.08120 1.54059 1.17394 0.85764 0.84130 0.78532 1.90573 1.24080 1.83467 1.52259 1.20580 1.03580 0.95157 1.40733 0.89057 1.26978 0.95398 1.04097 0.91904 1.70116 1.13267 1.31730 1.27706 0.84966 0.78544 0.74873 0.79727 1.19074 1.19385 1.16905 1.20618 1.00441 0.88951 0.96596 1.29859 1.04194 1.18525 1.25336 1.00609 0.72684 0.72354 0.72288 1.93550 1.80209 1.66676 1.56371 1.93538 1.33325 1.83671 1.86701 1.54681 1.77878 1.30386 1.19902 1.21541 1.04872 0.98788 0.79951 1.23471 0.98719 0.99496 0.99488 1.23475 0.94902 1.04027 0.99893 0.85027 0.90702 0.92203 0.82405 0.86068 0.75642 0.91004 0.82528 0.73474 0.84965 0.87337 0.86712 0.87373 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -8.22 9.25 -82.34 -0.76 -8.99 16 3 C 0.19 6.08 6.64 22.57 0.15 6.23 16 4 C -0.20 -6.76 9.03 22.35 0.20 -6.56 16 5 C -0.05 -2.23 8.69 22.41 0.19 -2.03 16 6 C 0.11 4.71 6.29 38.34 0.24 4.95 16 7 N -0.70 -31.41 5.31 -311.34 -1.65 -33.07 16 8 C 0.53 29.83 7.40 85.11 0.63 30.46 16 9 O -0.62 -39.06 12.37 -4.58 -0.06 -39.11 16 10 C -0.57 -30.65 9.31 23.60 0.22 -30.43 16 11 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 12 C 0.03 1.85 5.48 85.33 0.47 2.31 16 13 N -0.80 -46.45 11.78 21.85 0.26 -46.20 16 14 Si 1.00 38.94 29.56 68.60 2.03 40.97 16 15 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 17 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 18 C -0.04 -1.55 9.47 22.41 0.21 -1.34 16 19 C -0.69 -22.45 5.85 22.35 0.13 -22.32 16 20 S 2.73 78.43 5.30 -56.49 -0.30 78.13 16 21 O -0.98 -33.01 17.26 -122.67 -2.12 -35.13 16 22 O -0.98 -32.22 16.77 -128.00 -2.15 -34.37 16 23 N -1.07 -21.13 6.04 -169.41 -1.02 -22.15 16 24 C 0.06 0.98 6.46 44.99 0.29 1.27 16 25 C -0.17 -2.11 10.46 30.59 0.32 -1.79 16 26 C -0.18 -2.42 10.46 30.59 0.32 -2.10 16 27 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.04 7.66 -2.38 -0.02 1.03 16 29 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 30 H 0.16 4.24 6.29 -2.91 -0.02 4.22 16 31 H 0.12 5.94 6.23 -2.91 -0.02 5.92 16 32 H 0.41 15.50 8.78 -92.71 -0.81 14.68 16 33 H 0.28 14.62 8.29 -92.70 -0.77 13.85 16 34 H 0.16 5.04 7.33 -2.91 -0.02 5.02 16 35 H 0.43 6.48 8.96 -96.74 -0.87 5.61 16 36 H 0.13 2.40 8.11 -2.39 -0.02 2.38 16 37 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.67 358.17 -1.84 -82.51 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.56 Total: 37.42 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.49 Total: -20.02 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -2.42 Total: -101.41 kcal Atomic # 8 Polarization: -112.51 SS G_CDS: -5.08 Total: -117.59 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 78.43 SS G_CDS: -0.30 Total: 78.13 kcal Total: -80.67 -1.84 -82.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274711985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.146 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds