Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99760 * 2 1 4 4 C 1.38733 * 120.05286 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94137 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.06128 * 359.97438 * 5 4 3 7 7 S 1.76195 * 119.94913 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.40345 * 336.46756 * 7 6 5 9 9 O 1.42097 * 106.40526 * 203.54203 * 7 6 5 10 10 N 1.65608 * 107.21632 * 90.00166 * 7 6 5 11 11 C 1.47066 * 136.05885 * 269.63104 * 10 7 6 12 12 C 1.53758 * 87.88525 * 152.95940 * 11 10 7 13 13 N 1.46490 * 114.39696 * 272.67296 * 12 11 10 14 14 C 1.34774 * 120.00276 * 248.58487 * 13 12 11 15 15 O 1.21693 * 119.99989 * 0.02562 * 14 13 12 16 16 C 1.46382 * 120.00354 * 180.02562 * 14 13 12 17 17 H 1.07997 * 119.99423 * 0.02562 * 16 14 13 18 18 C 1.40044 * 120.00163 * 180.02562 * 16 14 13 19 19 N 1.30681 * 119.99977 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00005 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47186 * 89.99696 * 20 18 16 22 22 H 1.48497 * 109.47180 * 209.99753 * 20 18 16 23 23 H 1.48499 * 109.47004 * 329.99838 * 20 18 16 24 24 C 1.47059 * 136.05519 * 89.99983 * 10 7 6 25 25 C 1.38271 * 120.10494 * 0.27889 * 6 5 4 26 26 C 1.38149 * 120.05601 * 359.44684 * 25 6 5 27 27 H 1.09000 * 109.47739 * 300.00122 * 1 2 3 28 28 H 1.09003 * 109.47177 * 60.00806 * 1 2 3 29 29 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.03059 * 359.95152 * 4 3 2 31 31 H 1.08001 * 119.97192 * 180.02562 * 5 4 3 32 32 H 1.08993 * 113.46789 * 267.69306 * 11 10 7 33 33 H 1.09000 * 113.46381 * 38.13373 * 11 10 7 34 34 H 1.09004 * 114.08023 * 139.77730 * 12 11 10 35 35 H 0.96998 * 120.00030 * 68.59766 * 13 12 11 36 36 H 0.96998 * 119.99625 * 180.02562 * 19 18 16 37 37 H 1.09000 * 113.46908 * 321.86708 * 24 10 7 38 38 H 1.09004 * 113.46770 * 92.30630 * 24 10 7 39 39 H 1.08002 * 119.96611 * 179.70595 * 25 6 5 40 40 H 1.07993 * 120.02444 * 180.27573 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5169 -0.0011 6 6 3.3018 3.6759 -0.0016 7 16 4.1017 5.2458 -0.0016 8 8 5.3973 5.0361 0.5432 9 8 3.1702 6.1708 0.5423 10 7 4.3248 5.6822 -1.5835 11 6 5.3796 5.5037 -2.5926 12 6 4.2872 5.6062 -3.6698 13 7 3.6399 4.3337 -3.9982 14 6 3.8389 3.7680 -5.2051 15 8 4.5568 4.3140 -6.0221 16 6 3.1916 2.4968 -5.5334 17 1 2.5542 2.0125 -4.8085 18 6 3.3989 1.9088 -6.7874 19 7 4.1698 2.4951 -7.6646 20 14 2.5723 0.2870 -7.2065 21 1 1.2486 0.5515 -7.8257 22 1 3.4224 -0.4701 -8.1601 23 1 2.3885 -0.5098 -5.9670 24 6 3.5581 6.4246 -2.5953 25 6 1.9209 3.6048 0.0042 26 6 1.2914 2.3751 -0.0010 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3800 -0.0002 31 1 5.1344 2.5751 -0.0019 32 1 6.0961 6.3245 -2.6215 33 1 5.8594 4.5258 -2.5505 34 1 4.5808 6.1820 -4.5476 35 1 3.0678 3.8984 -3.3469 36 1 4.3131 2.0880 -8.5333 37 1 2.4861 6.2314 -2.5556 38 1 3.7945 7.4883 -2.6249 39 1 1.3341 4.5114 0.0086 40 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274826919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -75.579626 kcal Electronic energy + Delta-G solvation = -27758.290938 eV Core-core repulsion = 23667.304888 eV Total energy + Delta-G solvation = -4090.986050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34656 -39.43789 -37.64928 -37.14502 -36.64979 -35.78796 -32.72017 -31.80274 -31.39840 -30.56814 -27.88323 -27.64093 -25.98629 -25.78576 -23.14768 -22.67799 -21.20263 -19.59331 -18.81827 -18.44700 -17.79442 -17.24920 -17.09553 -16.61926 -16.03054 -15.62762 -15.57128 -15.10809 -14.91927 -14.33413 -14.09489 -13.85330 -13.73835 -13.52489 -13.39006 -13.10440 -12.98126 -12.76667 -12.30386 -12.27240 -12.07492 -11.97785 -11.91218 -11.55125 -11.23056 -11.17819 -11.10834 -10.97644 -10.59503 -10.55346 -10.46980 -10.29338 -9.25891 -9.05543 -8.92120 -8.74181 -7.72967 -7.65462 -6.26849 -4.72411 0.36216 0.82615 1.14091 2.92120 2.97111 3.08228 3.15879 3.18835 3.42281 3.84524 4.02680 4.15145 4.44430 4.49485 4.55302 4.61980 4.80722 4.88944 4.95817 5.05601 5.08516 5.17458 5.21984 5.33649 5.59044 5.64144 5.72281 5.75577 5.78948 5.83283 5.92185 5.99607 6.01284 6.11720 6.37779 6.44981 6.65386 7.05004 7.36168 7.81103 7.99035 8.24409 8.95011 9.41191 10.50773 10.68732 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.005108 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.736573 B = 5480.185710 C = 8049.991625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.311 6.311 3 C 0.183 3.817 4 C -0.169 4.169 5 C 0.024 3.976 6 C -0.712 4.712 7 S 2.723 3.277 8 O -0.960 6.960 9 O -0.963 6.963 10 N -1.044 6.044 11 C 0.108 3.892 12 C 0.130 3.870 13 N -0.742 5.742 14 C 0.556 3.444 15 O -0.577 6.577 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.089 3.911 19 N -0.765 5.765 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.116 3.884 25 C 0.022 3.978 26 C -0.229 4.229 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.381 0.619 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -0.390 14.816 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.136 3.864 4 C -0.188 4.188 5 C 0.005 3.995 6 C -0.799 4.799 7 S 2.816 3.184 8 O -0.951 6.951 9 O -0.954 6.954 10 N -0.884 5.884 11 C -0.019 4.019 12 C 0.019 3.981 13 N -0.395 5.395 14 C 0.361 3.639 15 O -0.459 6.459 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.394 5.394 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.010 4.010 25 C 0.003 3.997 26 C -0.248 4.248 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.213 0.787 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.159 0.841 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.213 0.204 14.969 15.852 hybrid contribution -1.333 -1.644 -0.015 2.116 sum -6.545 -1.440 14.954 16.387 Atomic orbital electron populations 1.23173 0.77754 1.04423 1.01843 1.86117 1.22032 1.26822 1.87364 1.19320 0.92583 0.84255 0.90199 1.20542 0.91475 0.99013 1.07761 1.20702 1.00029 0.90236 0.88545 1.30832 1.05032 1.21527 1.22532 1.00817 0.73271 0.73442 0.70852 1.93556 1.39062 1.86680 1.75770 1.93546 1.64976 1.60942 1.75895 1.59874 1.31654 1.68625 1.28250 1.23305 0.91711 1.02265 0.84650 1.21915 0.92137 0.88473 0.95606 1.45835 1.53195 1.22069 1.18422 1.18239 0.81347 0.85493 0.78828 1.90609 1.41885 1.65229 1.48212 1.20833 1.31110 1.05512 1.00483 0.91599 1.25674 0.93736 0.97957 0.95734 1.70008 1.28265 1.36162 1.04936 0.86408 0.79585 0.82076 0.78929 1.19726 1.20358 1.18972 1.23032 0.97070 0.96546 0.84386 1.20655 0.92237 0.98111 0.88726 1.21315 1.00476 0.92226 1.10813 0.92364 0.91898 0.87878 0.84171 0.83701 0.89456 0.90286 0.86924 0.78705 0.92014 0.90478 0.89031 0.84149 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.67 10.50 -19.43 -0.20 -3.87 16 3 C 0.18 2.33 6.69 -39.22 -0.26 2.07 16 4 C -0.17 -2.18 9.99 -39.44 -0.39 -2.58 16 5 C 0.02 0.32 9.51 -39.61 -0.38 -0.05 16 6 C -0.71 -9.69 5.98 -39.56 -0.24 -9.92 16 7 S 2.72 39.41 6.27 -107.50 -0.67 38.73 16 8 O -0.96 -15.98 17.28 -57.17 -0.99 -16.96 16 9 O -0.96 -15.44 17.27 -57.17 -0.99 -16.42 16 10 N -1.04 -14.53 4.23 -125.06 -0.53 -15.06 16 11 C 0.11 1.57 8.56 -8.38 -0.07 1.50 16 12 C 0.13 2.15 4.61 -67.68 -0.31 1.84 16 13 N -0.74 -15.09 5.39 -54.90 -0.30 -15.39 16 14 C 0.56 14.75 7.75 -12.99 -0.10 14.65 16 15 O -0.58 -17.43 14.61 5.20 0.08 -17.35 16 16 C -0.54 -14.62 9.54 -35.63 -0.34 -14.96 16 17 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 18 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 19 N -0.77 -22.08 11.83 55.55 0.66 -21.43 16 20 Si 0.91 19.54 29.56 -169.99 -5.02 14.52 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C 0.12 1.50 8.49 -8.52 -0.07 1.43 16 25 C 0.02 0.28 9.52 -39.60 -0.38 -0.10 16 26 C -0.23 -2.66 9.04 -39.43 -0.36 -3.02 16 27 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.15 1.77 7.61 -52.49 -0.40 1.37 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 2.01 7.45 -51.93 -0.39 1.62 16 35 H 0.38 7.09 8.74 -40.82 -0.36 6.73 16 36 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.14 1.52 7.61 -52.49 -0.40 1.12 16 40 H 0.14 1.21 6.30 -52.49 -0.33 0.87 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -36.68 361.19 -9.28 -45.96 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.75 Total: 7.52 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.00 Total: -5.69 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.17 Total: -51.87 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -2.10 Total: -54.61 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 39.41 SS G_CDS: -0.67 Total: 38.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.68 -9.28 -45.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274826919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.620 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds