Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99760 * 2 1 4 4 C 1.38733 * 120.05286 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94137 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.06128 * 359.97438 * 5 4 3 7 7 S 1.76195 * 119.94913 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.40345 * 336.46756 * 7 6 5 9 9 O 1.42097 * 106.40526 * 203.54203 * 7 6 5 10 10 N 1.65608 * 107.21632 * 90.00166 * 7 6 5 11 11 C 1.47066 * 136.05885 * 269.63104 * 10 7 6 12 12 C 1.53758 * 87.88525 * 152.95940 * 11 10 7 13 13 N 1.46490 * 114.39696 * 272.67296 * 12 11 10 14 14 C 1.34774 * 120.00276 * 248.58487 * 13 12 11 15 15 O 1.21693 * 119.99989 * 0.02562 * 14 13 12 16 16 C 1.46382 * 120.00354 * 180.02562 * 14 13 12 17 17 H 1.07997 * 119.99423 * 0.02562 * 16 14 13 18 18 C 1.40044 * 120.00163 * 180.02562 * 16 14 13 19 19 N 1.30681 * 119.99977 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00005 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47186 * 89.99696 * 20 18 16 22 22 H 1.48497 * 109.47180 * 209.99753 * 20 18 16 23 23 H 1.48499 * 109.47004 * 329.99838 * 20 18 16 24 24 C 1.47059 * 136.05519 * 89.99983 * 10 7 6 25 25 C 1.38271 * 120.10494 * 0.27889 * 6 5 4 26 26 C 1.38149 * 120.05601 * 359.44684 * 25 6 5 27 27 H 1.09000 * 109.47739 * 300.00122 * 1 2 3 28 28 H 1.09003 * 109.47177 * 60.00806 * 1 2 3 29 29 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.03059 * 359.95152 * 4 3 2 31 31 H 1.08001 * 119.97192 * 180.02562 * 5 4 3 32 32 H 1.08993 * 113.46789 * 267.69306 * 11 10 7 33 33 H 1.09000 * 113.46381 * 38.13373 * 11 10 7 34 34 H 1.09004 * 114.08023 * 139.77730 * 12 11 10 35 35 H 0.96998 * 120.00030 * 68.59766 * 13 12 11 36 36 H 0.96998 * 119.99625 * 180.02562 * 19 18 16 37 37 H 1.09000 * 113.46908 * 321.86708 * 24 10 7 38 38 H 1.09004 * 113.46770 * 92.30630 * 24 10 7 39 39 H 1.08002 * 119.96611 * 179.70595 * 25 6 5 40 40 H 1.07993 * 120.02444 * 180.27573 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5169 -0.0011 6 6 3.3018 3.6759 -0.0016 7 16 4.1017 5.2458 -0.0016 8 8 5.3973 5.0361 0.5432 9 8 3.1702 6.1708 0.5423 10 7 4.3248 5.6822 -1.5835 11 6 5.3796 5.5037 -2.5926 12 6 4.2872 5.6062 -3.6698 13 7 3.6399 4.3337 -3.9982 14 6 3.8389 3.7680 -5.2051 15 8 4.5568 4.3140 -6.0221 16 6 3.1916 2.4968 -5.5334 17 1 2.5542 2.0125 -4.8085 18 6 3.3989 1.9088 -6.7874 19 7 4.1698 2.4951 -7.6646 20 14 2.5723 0.2870 -7.2065 21 1 1.2486 0.5515 -7.8257 22 1 3.4224 -0.4701 -8.1601 23 1 2.3885 -0.5098 -5.9670 24 6 3.5581 6.4246 -2.5953 25 6 1.9209 3.6048 0.0042 26 6 1.2914 2.3751 -0.0010 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3800 -0.0002 31 1 5.1344 2.5751 -0.0019 32 1 6.0961 6.3245 -2.6215 33 1 5.8594 4.5258 -2.5505 34 1 4.5808 6.1820 -4.5476 35 1 3.0678 3.8984 -3.3469 36 1 4.3131 2.0880 -8.5333 37 1 2.4861 6.2314 -2.5556 38 1 3.7945 7.4883 -2.6249 39 1 1.3341 4.5114 0.0086 40 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274826919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -104.918429 kcal Electronic energy + Delta-G solvation = -27759.563164 eV Core-core repulsion = 23667.304888 eV Total energy + Delta-G solvation = -4092.258276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22925 -40.76995 -38.55802 -38.53776 -38.36368 -37.01313 -34.70122 -33.63578 -32.32977 -31.49903 -29.38284 -28.33206 -27.80561 -26.91629 -24.10771 -23.61318 -22.82590 -21.15598 -19.93869 -19.45474 -19.23112 -18.74976 -18.21190 -17.58562 -17.47993 -16.79713 -16.71010 -16.59654 -15.97651 -15.84738 -15.26891 -15.08604 -14.84367 -14.65544 -14.59517 -14.42163 -14.32125 -13.95321 -13.87159 -13.35603 -13.29525 -13.24628 -13.05795 -12.94560 -12.77705 -12.59673 -12.33605 -12.12822 -12.04601 -12.00448 -11.91221 -11.71271 -10.91232 -10.22256 -10.20692 -9.80461 -9.68024 -9.40491 -8.27273 -6.82368 -0.75791 -0.18322 0.18789 1.39764 1.40714 1.55080 1.85805 2.15704 2.24248 2.42576 2.48247 2.73155 3.02528 3.03870 3.51159 3.60562 3.73569 3.76582 3.97070 4.08737 4.18337 4.33347 4.35670 4.42344 4.45235 4.62159 4.68270 4.69723 4.78076 4.80380 4.84881 4.89970 5.00958 5.03755 5.10811 5.34063 5.46413 5.52442 5.91534 6.20791 6.24565 6.35384 6.90081 7.56157 8.52265 8.70010 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.005108 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.736573 B = 5480.185710 C = 8049.991625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.326 6.326 3 C 0.177 3.823 4 C -0.184 4.184 5 C 0.010 3.990 6 C -0.722 4.722 7 S 2.740 3.260 8 O -0.985 6.985 9 O -0.977 6.977 10 N -1.045 6.045 11 C 0.113 3.887 12 C 0.110 3.890 13 N -0.731 5.731 14 C 0.546 3.454 15 O -0.624 6.624 16 C -0.570 4.570 17 H 0.080 0.920 18 C 0.035 3.965 19 N -0.817 5.817 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.254 1.254 24 C 0.129 3.871 25 C 0.015 3.985 26 C -0.228 4.228 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.391 0.609 36 H 0.274 0.726 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.157 0.843 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 -1.099 15.829 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.239 6.239 3 C 0.129 3.871 4 C -0.203 4.203 5 C -0.009 4.009 6 C -0.811 4.811 7 S 2.836 3.164 8 O -0.976 6.976 9 O -0.968 6.968 10 N -0.885 5.885 11 C -0.014 4.014 12 C 0.000 4.000 13 N -0.383 5.383 14 C 0.350 3.650 15 O -0.510 6.510 16 C -0.607 4.607 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.447 5.447 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.178 1.178 24 C 0.004 3.996 25 C -0.005 4.005 26 C -0.247 4.247 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.224 0.776 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.175 0.825 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.218 -0.465 16.045 17.600 hybrid contribution -0.758 -1.431 -0.266 1.641 sum -7.975 -1.897 15.779 17.781 Atomic orbital electron populations 1.23509 0.75652 1.06211 1.02884 1.86106 1.24257 1.26436 1.87053 1.19499 0.92689 0.85088 0.89788 1.20756 0.92275 0.99226 1.08053 1.20832 1.00391 0.90585 0.89095 1.30676 1.05729 1.20726 1.23969 1.00109 0.72486 0.73334 0.70507 1.93519 1.40536 1.87091 1.76461 1.93520 1.65137 1.61830 1.76292 1.59778 1.31672 1.68969 1.28039 1.23283 0.91662 1.02807 0.83628 1.22113 0.94242 0.87284 0.96360 1.45409 1.52920 1.23150 1.16782 1.18449 0.80812 0.85726 0.80002 1.90567 1.43788 1.66457 1.50214 1.21338 1.31678 1.06253 1.01415 0.90216 1.26802 0.93945 1.02051 0.95276 1.70160 1.30232 1.38562 1.05713 0.85173 0.78536 0.76596 0.78989 1.18518 1.19853 1.17763 1.23096 0.97441 0.97508 0.81571 1.20942 0.91880 0.99246 0.88391 1.21637 1.01973 0.91432 1.09635 0.90627 0.91463 0.85903 0.83293 0.83481 0.86636 0.91598 0.88477 0.77573 0.91596 0.89214 0.85714 0.82530 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.06 10.50 -92.46 -0.97 -8.03 16 3 C 0.18 4.22 6.69 22.51 0.15 4.37 16 4 C -0.18 -4.66 9.99 22.36 0.22 -4.43 16 5 C 0.01 0.27 9.51 22.25 0.21 0.49 16 6 C -0.72 -18.96 5.98 22.29 0.13 -18.83 16 7 S 2.74 76.37 6.27 -56.49 -0.35 76.02 16 8 O -0.99 -32.37 17.28 -128.00 -2.21 -34.58 16 9 O -0.98 -29.73 17.27 -128.00 -2.21 -31.94 16 10 N -1.04 -27.50 4.23 -549.59 -2.32 -29.83 16 11 C 0.11 3.19 8.56 83.26 0.71 3.91 16 12 C 0.11 3.59 4.61 45.55 0.21 3.80 16 13 N -0.73 -29.76 5.39 -445.82 -2.40 -32.17 16 14 C 0.55 29.56 7.75 86.36 0.67 30.22 16 15 O -0.62 -39.01 14.61 -4.33 -0.06 -39.07 16 16 C -0.57 -30.93 9.54 24.83 0.24 -30.69 16 17 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 18 C 0.03 1.88 5.50 85.30 0.47 2.35 16 19 N -0.82 -48.25 11.83 21.84 0.26 -48.00 16 20 Si 0.99 39.76 29.56 68.60 2.03 41.79 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 C 0.13 3.07 8.49 83.17 0.71 3.78 16 25 C 0.01 0.34 9.52 22.26 0.21 0.55 16 26 C -0.23 -4.78 9.04 22.37 0.20 -4.57 16 27 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 28 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 31 H 0.15 3.66 7.61 -2.91 -0.02 3.64 16 32 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 3.52 7.45 -2.38 -0.02 3.50 16 35 H 0.39 14.33 8.74 -92.71 -0.81 13.52 16 36 H 0.27 14.71 8.29 -92.71 -0.77 13.94 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.16 3.01 7.61 -2.91 -0.02 2.98 16 40 H 0.17 2.37 6.30 -2.91 -0.02 2.35 16 Total: -1.00 -80.69 361.19 -2.72 -83.41 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.28 Total: 30.21 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.25 Total: -7.81 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.47 Total: -109.99 kcal Atomic # 8 Polarization: -108.17 SS G_CDS: -5.46 Total: -113.63 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: 76.37 SS G_CDS: -0.35 Total: 76.02 kcal Total: -80.69 -2.72 -83.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274826919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.509 kcal (2) G-P(sol) polarization free energy of solvation -80.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds