Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34653 * 116.99898 * 2 1 4 4 O 1.21505 * 120.00206 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99642 * 179.97438 * 3 2 1 6 6 C 1.39957 * 119.99850 * 186.13221 * 5 3 2 7 7 C 1.38866 * 120.06687 * 325.13309 * 6 5 3 8 8 C 1.38116 * 119.92801 * 179.72094 * 7 6 5 9 9 C 1.38285 * 120.07029 * 0.53129 * 8 7 6 10 10 S 1.76195 * 119.93201 * 179.74684 * 9 8 7 11 11 O 1.42094 * 106.40316 * 23.56016 * 10 9 8 12 12 O 1.42103 * 106.40361 * 156.48445 * 10 9 8 13 13 N 1.65606 * 107.21725 * 270.01921 * 10 9 8 14 14 C 1.36932 * 120.00353 * 270.00182 * 13 10 9 15 15 H 1.07995 * 120.00253 * 128.54202 * 14 13 10 16 16 C 1.38815 * 119.99749 * 308.54663 * 14 13 10 17 17 N 1.31620 * 120.00268 * 336.66142 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 156.66474 * 16 14 13 19 19 H 1.48503 * 109.46967 * 89.99842 * 18 16 14 20 20 H 1.48494 * 109.47284 * 209.99529 * 18 16 14 21 21 H 1.48492 * 109.47190 * 330.00081 * 18 16 14 22 22 C 1.46507 * 119.99540 * 90.00047 * 13 10 9 23 23 C 1.53005 * 117.49375 * 192.54493 * 22 13 10 24 24 C 1.52993 * 117.49599 * 123.92825 * 22 13 10 25 25 C 1.38278 * 120.13799 * 359.76696 * 9 8 7 26 26 C 1.38119 * 120.07233 * 359.95388 * 25 9 8 27 27 H 1.09006 * 109.46912 * 299.99978 * 1 2 3 28 28 H 1.08997 * 109.47383 * 59.99624 * 1 2 3 29 29 H 1.08990 * 109.47114 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00804 * 6.13638 * 5 3 2 31 31 H 1.08001 * 120.03613 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.97012 * 180.25629 * 8 7 6 33 33 H 0.96996 * 120.00183 * 185.07228 * 17 16 14 34 34 H 1.08994 * 115.55329 * 338.25121 * 22 13 10 35 35 H 1.08998 * 117.49977 * 0.02562 * 23 22 13 36 36 H 1.08997 * 117.49241 * 145.02383 * 23 22 13 37 37 H 1.09007 * 117.49570 * 214.97965 * 24 22 13 38 38 H 1.09002 * 117.50386 * 359.96842 * 24 22 13 39 39 H 1.08000 * 119.96925 * 179.97438 * 25 9 8 40 40 H 1.07993 * 120.03904 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0449 2.5104 0.1300 7 6 3.4789 3.6449 -0.4365 8 6 4.1058 4.8682 -0.3021 9 6 5.3014 4.9622 0.3864 10 16 6.1013 6.5235 0.5500 11 8 5.0901 7.5103 0.3985 12 8 6.9309 6.4309 1.7000 13 7 7.1173 6.6921 -0.7469 14 6 8.4106 6.2496 -0.6656 15 1 8.8070 5.5968 -1.4292 16 6 9.2121 6.6401 0.3983 17 7 8.9375 7.7453 1.0582 18 14 10.6806 5.5972 0.8934 19 1 11.8821 6.0475 0.1457 20 1 10.9218 5.7422 2.3514 21 1 10.4055 4.1728 0.5764 22 6 6.6322 7.3146 -1.9813 23 6 7.5059 7.1813 -3.2302 24 6 7.4008 8.5271 -2.5102 25 6 5.8706 3.8333 0.9464 26 6 5.2458 2.6079 0.8204 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9373 0.4616 -0.0889 31 1 2.5475 3.5714 -0.9782 32 1 3.6641 5.7517 -0.7389 33 1 9.5381 8.0573 1.7531 34 1 5.5511 7.3045 -2.1195 35 1 8.4413 6.6301 -3.1336 36 1 6.9995 7.0834 -4.1904 37 1 6.8253 9.3147 -2.9967 38 1 8.2671 8.8620 -1.9396 39 1 6.8047 3.9097 1.4832 40 1 5.6911 1.7266 1.2576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274989298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -74.417920 kcal Electronic energy + Delta-G solvation = -27756.883701 eV Core-core repulsion = 23665.948027 eV Total energy + Delta-G solvation = -4090.935674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02743 -38.93468 -37.07844 -36.71849 -35.64677 -34.99355 -34.11461 -33.21963 -30.66035 -30.64750 -29.77397 -27.65592 -24.94378 -23.36728 -22.60685 -21.48991 -21.19390 -20.53191 -19.09049 -18.83730 -17.75682 -17.52841 -16.84742 -16.41802 -15.93922 -15.86296 -15.20790 -14.87469 -14.36854 -14.18040 -14.14432 -13.80547 -13.70784 -13.28271 -12.99982 -12.69531 -12.61865 -12.40334 -12.25512 -11.87945 -11.31759 -11.22504 -11.10993 -11.02745 -10.81174 -10.70755 -10.55160 -10.44352 -10.34850 -10.27801 -10.22597 -9.91716 -9.63120 -9.36465 -8.74225 -8.64967 -8.24352 -7.42809 -6.52778 -4.18357 1.16140 1.71079 1.85935 1.97526 2.54804 3.18630 3.25944 3.29826 3.85871 3.95070 4.12607 4.61915 4.81046 4.82243 4.90880 4.94922 5.04308 5.16151 5.21949 5.37799 5.51584 5.59041 5.76891 5.80113 5.87840 5.92601 6.01196 6.11446 6.18344 6.30371 6.39022 6.44970 6.49028 6.59929 6.80367 6.87968 7.11707 7.15208 7.24411 7.40209 7.58966 8.00303 8.21465 8.89436 9.32858 10.53051 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.003532 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.695372 B = 7926.221046 C = 8595.776014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.646 3.354 4 O -0.550 6.550 5 N -0.649 5.649 6 C 0.176 3.824 7 C -0.145 4.145 8 C -0.017 4.017 9 C -0.669 4.669 10 S 2.574 3.426 11 O -1.008 7.008 12 O -0.944 6.944 13 N -0.789 5.789 14 C -0.289 4.289 15 H 0.083 0.917 16 C 0.064 3.936 17 N -0.780 5.780 18 Si 0.920 3.080 19 H -0.277 1.277 20 H -0.278 1.278 21 H -0.264 1.264 22 C 0.099 3.901 23 C -0.188 4.188 24 C -0.184 4.184 25 C -0.002 4.002 26 C -0.165 4.165 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.417 0.583 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.280 0.720 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -13.043 -4.511 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.400 3.600 4 O -0.437 6.437 5 N -0.300 5.300 6 C 0.083 3.917 7 C -0.166 4.166 8 C -0.037 4.037 9 C -0.746 4.746 10 S 2.672 3.328 11 O -0.998 6.998 12 O -0.932 6.932 13 N -0.611 5.611 14 C -0.435 4.435 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.414 5.414 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.010 4.010 23 C -0.228 4.228 24 C -0.224 4.224 25 C -0.022 4.022 26 C -0.186 4.186 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.253 0.747 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.522 -12.043 -3.504 15.164 hybrid contribution 0.464 -1.588 0.058 1.655 sum -8.059 -13.631 -3.446 16.205 Atomic orbital electron populations 1.23250 0.73897 1.03643 1.03058 1.86239 1.24584 1.30675 1.86939 1.18111 0.83154 0.82439 0.76329 1.91031 1.64388 1.34448 1.53799 1.41986 1.03422 1.09769 1.74836 1.17601 0.93247 0.83635 0.97200 1.21341 1.01709 0.91887 1.01662 1.20814 0.92226 0.97143 0.93521 1.32638 1.07366 1.26484 1.08096 1.09709 0.72242 0.74133 0.76695 1.93327 1.60971 1.58330 1.87161 1.93427 1.65192 1.85815 1.48801 1.52346 1.17261 1.64700 1.26762 1.18945 0.85570 1.28022 1.11005 0.89945 1.25746 0.98648 0.94578 0.96473 1.69818 1.35368 1.17212 1.19042 0.86057 0.80200 0.80817 0.78399 1.20259 1.20300 1.18811 1.21224 0.94525 0.98835 0.86380 1.23154 1.03251 1.01460 0.94890 1.23153 1.04345 0.91005 1.03929 1.20744 0.97940 0.90174 0.93315 1.20941 0.96473 0.99061 1.02123 0.91603 0.91597 0.87762 0.74653 0.84200 0.84768 0.90973 0.87298 0.87876 0.90267 0.90145 0.87850 0.83985 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.93 10.62 -40.36 -0.43 -4.36 16 3 C 0.65 8.68 8.60 54.05 0.47 9.15 16 4 O -0.55 -9.07 13.51 -19.27 -0.26 -9.33 16 5 N -0.65 -8.04 5.35 -14.27 -0.08 -8.12 16 6 C 0.18 2.76 6.31 -83.68 -0.53 2.24 16 7 C -0.15 -2.55 8.71 -39.39 -0.34 -2.89 16 8 C -0.02 -0.34 9.51 -39.61 -0.38 -0.71 16 9 C -0.67 -14.09 5.98 -39.55 -0.24 -14.32 16 10 S 2.57 63.63 5.44 -107.50 -0.59 63.04 16 11 O -1.01 -26.76 16.35 -57.17 -0.93 -27.69 16 12 O -0.94 -25.81 13.53 -57.17 -0.77 -26.58 16 13 N -0.79 -18.65 3.03 -53.43 -0.16 -18.81 16 14 C -0.29 -6.95 7.98 -15.06 -0.12 -7.07 16 15 H 0.08 1.86 7.06 -52.49 -0.37 1.49 16 16 C 0.06 1.59 4.06 -17.43 -0.07 1.52 16 17 N -0.78 -20.96 11.71 55.49 0.65 -20.31 16 18 Si 0.92 19.33 29.62 -169.99 -5.03 14.29 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 C 0.10 2.06 6.16 -67.93 -0.42 1.65 16 23 C -0.19 -3.34 9.86 -26.73 -0.26 -3.61 16 24 C -0.18 -3.56 10.20 -26.74 -0.27 -3.83 16 25 C 0.00 -0.04 9.51 -39.61 -0.38 -0.42 16 26 C -0.17 -2.59 9.97 -39.39 -0.39 -2.98 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.42 3.69 8.93 -40.82 -0.36 3.32 16 31 H 0.14 2.38 6.16 -52.49 -0.32 2.06 16 32 H 0.13 2.48 7.61 -52.49 -0.40 2.08 16 33 H 0.28 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.11 2.10 7.87 -51.93 -0.41 1.70 16 35 H 0.10 1.90 6.64 -51.93 -0.34 1.55 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 38 H 0.10 2.24 8.14 -51.93 -0.42 1.81 16 39 H 0.14 2.68 7.61 -52.49 -0.40 2.28 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -33.15 354.99 -8.83 -41.98 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.71 Total: 10.36 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.87 Total: -19.80 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.41 Total: -47.25 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -2.40 Total: -67.97 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: 63.63 SS G_CDS: -0.59 Total: 63.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.15 -8.83 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274989298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.438 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds