Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34653 * 116.99898 * 2 1 4 4 O 1.21505 * 120.00206 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99642 * 179.97438 * 3 2 1 6 6 C 1.39957 * 119.99850 * 186.13221 * 5 3 2 7 7 C 1.38866 * 120.06687 * 325.13309 * 6 5 3 8 8 C 1.38116 * 119.92801 * 179.72094 * 7 6 5 9 9 C 1.38285 * 120.07029 * 0.53129 * 8 7 6 10 10 S 1.76195 * 119.93201 * 179.74684 * 9 8 7 11 11 O 1.42094 * 106.40316 * 23.56016 * 10 9 8 12 12 O 1.42103 * 106.40361 * 156.48445 * 10 9 8 13 13 N 1.65606 * 107.21725 * 270.01921 * 10 9 8 14 14 C 1.36932 * 120.00353 * 270.00182 * 13 10 9 15 15 H 1.07995 * 120.00253 * 128.54202 * 14 13 10 16 16 C 1.38815 * 119.99749 * 308.54663 * 14 13 10 17 17 N 1.31620 * 120.00268 * 336.66142 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 156.66474 * 16 14 13 19 19 H 1.48503 * 109.46967 * 89.99842 * 18 16 14 20 20 H 1.48494 * 109.47284 * 209.99529 * 18 16 14 21 21 H 1.48492 * 109.47190 * 330.00081 * 18 16 14 22 22 C 1.46507 * 119.99540 * 90.00047 * 13 10 9 23 23 C 1.53005 * 117.49375 * 192.54493 * 22 13 10 24 24 C 1.52993 * 117.49599 * 123.92825 * 22 13 10 25 25 C 1.38278 * 120.13799 * 359.76696 * 9 8 7 26 26 C 1.38119 * 120.07233 * 359.95388 * 25 9 8 27 27 H 1.09006 * 109.46912 * 299.99978 * 1 2 3 28 28 H 1.08997 * 109.47383 * 59.99624 * 1 2 3 29 29 H 1.08990 * 109.47114 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00804 * 6.13638 * 5 3 2 31 31 H 1.08001 * 120.03613 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.97012 * 180.25629 * 8 7 6 33 33 H 0.96996 * 120.00183 * 185.07228 * 17 16 14 34 34 H 1.08994 * 115.55329 * 338.25121 * 22 13 10 35 35 H 1.08998 * 117.49977 * 0.02562 * 23 22 13 36 36 H 1.08997 * 117.49241 * 145.02383 * 23 22 13 37 37 H 1.09007 * 117.49570 * 214.97965 * 24 22 13 38 38 H 1.09002 * 117.50386 * 359.96842 * 24 22 13 39 39 H 1.08000 * 119.96925 * 179.97438 * 25 9 8 40 40 H 1.07993 * 120.03904 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0449 2.5104 0.1300 7 6 3.4789 3.6449 -0.4365 8 6 4.1058 4.8682 -0.3021 9 6 5.3014 4.9622 0.3864 10 16 6.1013 6.5235 0.5500 11 8 5.0901 7.5103 0.3985 12 8 6.9309 6.4309 1.7000 13 7 7.1173 6.6921 -0.7469 14 6 8.4106 6.2496 -0.6656 15 1 8.8070 5.5968 -1.4292 16 6 9.2121 6.6401 0.3983 17 7 8.9375 7.7453 1.0582 18 14 10.6806 5.5972 0.8934 19 1 11.8821 6.0475 0.1457 20 1 10.9218 5.7422 2.3514 21 1 10.4055 4.1728 0.5764 22 6 6.6322 7.3146 -1.9813 23 6 7.5059 7.1813 -3.2302 24 6 7.4008 8.5271 -2.5102 25 6 5.8706 3.8333 0.9464 26 6 5.2458 2.6079 0.8204 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9373 0.4616 -0.0889 31 1 2.5475 3.5714 -0.9782 32 1 3.6641 5.7517 -0.7389 33 1 9.5381 8.0573 1.7531 34 1 5.5511 7.3045 -2.1195 35 1 8.4413 6.6301 -3.1336 36 1 6.9995 7.0834 -4.1904 37 1 6.8253 9.3147 -2.9967 38 1 8.2671 8.8620 -1.9396 39 1 6.8047 3.9097 1.4832 40 1 5.6911 1.7266 1.2576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274989298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -98.230325 kcal Electronic energy + Delta-G solvation = -27757.916284 eV Core-core repulsion = 23665.948027 eV Total energy + Delta-G solvation = -4091.968258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09703 -40.16661 -38.71167 -37.75927 -37.64339 -36.21363 -36.09410 -35.00376 -32.44720 -32.06191 -31.05832 -28.41341 -26.77944 -24.61309 -23.97424 -22.99688 -22.37231 -22.18352 -20.66752 -20.12028 -19.26747 -18.86510 -17.95935 -17.79792 -17.65446 -17.21497 -17.01577 -16.33076 -15.82767 -15.56352 -15.37569 -15.20117 -15.03661 -14.75257 -14.37726 -14.18364 -14.09417 -13.87923 -13.62664 -13.06421 -13.04459 -12.78092 -12.58605 -12.49468 -12.43067 -12.23601 -12.10561 -12.03342 -11.95229 -11.91325 -11.60745 -11.58164 -11.29886 -10.94519 -10.57734 -10.04675 -9.57243 -9.18913 -8.37839 -6.07765 -0.26947 0.14795 0.30868 0.88678 1.46471 1.51414 1.57180 1.66026 2.35412 2.48330 2.88855 3.02683 3.05731 3.27967 3.55018 3.71148 3.89656 4.01096 4.24893 4.26562 4.31204 4.32820 4.36924 4.38591 4.48294 4.56466 4.67151 4.78861 4.80448 4.92863 5.01420 5.06936 5.12244 5.28706 5.30625 5.33065 5.52387 5.63772 5.85337 5.90916 6.09721 6.34653 7.01313 7.07215 7.50168 8.68721 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.003532 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.695372 B = 7926.221046 C = 8595.776014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.362 6.362 3 C 0.647 3.353 4 O -0.583 6.583 5 N -0.634 5.634 6 C 0.191 3.809 7 C -0.149 4.149 8 C -0.028 4.028 9 C -0.689 4.689 10 S 2.580 3.420 11 O -1.040 7.040 12 O -0.981 6.981 13 N -0.801 5.801 14 C -0.294 4.294 15 H 0.097 0.903 16 C 0.020 3.980 17 N -0.829 5.829 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.291 1.291 21 H -0.245 1.245 22 C 0.064 3.936 23 C -0.155 4.155 24 C -0.190 4.190 25 C -0.016 4.016 26 C -0.149 4.149 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.437 0.563 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.276 0.724 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -16.660 -5.873 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.275 6.275 3 C 0.401 3.599 4 O -0.473 6.473 5 N -0.288 5.288 6 C 0.097 3.903 7 C -0.170 4.170 8 C -0.048 4.048 9 C -0.772 4.772 10 S 2.684 3.316 11 O -1.030 7.030 12 O -0.969 6.969 13 N -0.624 5.624 14 C -0.439 4.439 15 H 0.114 0.886 16 C -0.193 4.193 17 N -0.465 5.465 18 Si 0.796 3.204 19 H -0.186 1.186 20 H -0.218 1.218 21 H -0.168 1.168 22 C -0.044 4.044 23 C -0.194 4.194 24 C -0.230 4.230 25 C -0.036 4.036 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.278 0.722 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.922 -15.666 -4.905 18.684 hybrid contribution 0.370 -0.615 0.439 0.842 sum -8.552 -16.282 -4.466 18.926 Atomic orbital electron populations 1.23620 0.72050 1.06114 1.02866 1.86273 1.26242 1.28692 1.86277 1.18250 0.83209 0.82797 0.75624 1.91021 1.65183 1.35882 1.55222 1.41803 1.03460 1.09364 1.74132 1.17623 0.92902 0.84367 0.95402 1.21418 1.01778 0.91868 1.01918 1.20826 0.91984 0.98139 0.93837 1.31977 1.08704 1.25252 1.11234 1.08790 0.71905 0.74652 0.76297 1.93268 1.61802 1.60364 1.87538 1.93373 1.66265 1.86778 1.50529 1.52242 1.17220 1.65680 1.27252 1.19257 0.85632 1.27813 1.11193 0.88574 1.26648 1.01242 0.95070 0.96385 1.69931 1.36968 1.19348 1.20274 0.85243 0.77703 0.80281 0.77220 1.18604 1.21751 1.16845 1.21565 0.95591 1.00405 0.86816 1.23196 1.02155 0.99087 0.94969 1.23149 1.03369 0.92231 1.04281 1.20850 0.98205 0.90991 0.93546 1.21232 0.95818 0.99138 1.00739 0.92035 0.91653 0.83949 0.72232 0.83725 0.85074 0.91412 0.86496 0.88486 0.86441 0.87610 0.90883 0.84427 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -6.49 10.62 -55.63 -0.59 -7.08 16 3 C 0.65 15.55 8.60 129.79 1.12 16.67 16 4 O -0.58 -18.22 13.51 19.82 0.27 -17.95 16 5 N -0.63 -13.44 5.35 -429.45 -2.30 -15.74 16 6 C 0.19 5.47 6.31 38.14 0.24 5.71 16 7 C -0.15 -5.03 8.71 22.39 0.20 -4.83 16 8 C -0.03 -1.09 9.51 22.25 0.21 -0.88 16 9 C -0.69 -29.35 5.98 22.29 0.13 -29.22 16 10 S 2.58 132.51 5.44 -56.49 -0.31 132.20 16 11 O -1.04 -57.79 16.35 -128.00 -2.09 -59.89 16 12 O -0.98 -56.05 13.53 -128.00 -1.73 -57.79 16 13 N -0.80 -38.81 3.03 -322.94 -0.98 -39.79 16 14 C -0.29 -14.28 7.98 84.04 0.67 -13.61 16 15 H 0.10 4.29 7.06 -2.91 -0.02 4.27 16 16 C 0.02 1.04 4.06 84.86 0.34 1.38 16 17 N -0.83 -46.61 11.71 21.65 0.25 -46.35 16 18 Si 0.97 39.64 29.62 68.60 2.03 41.67 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 22 C 0.06 2.69 6.16 44.99 0.28 2.97 16 23 C -0.16 -5.25 9.86 30.59 0.30 -4.95 16 24 C -0.19 -7.36 10.20 30.59 0.31 -7.05 16 25 C -0.02 -0.60 9.51 22.25 0.21 -0.39 16 26 C -0.15 -4.20 9.97 22.39 0.22 -3.98 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.44 5.76 8.93 -92.71 -0.83 4.93 16 31 H 0.15 4.75 6.16 -2.91 -0.02 4.74 16 32 H 0.13 5.02 7.61 -2.91 -0.02 5.00 16 33 H 0.28 14.79 8.32 -92.71 -0.77 14.02 16 34 H 0.12 4.58 7.87 -2.39 -0.02 4.56 16 35 H 0.10 3.42 6.64 -2.39 -0.02 3.40 16 36 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 38 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.14 5.18 7.61 -2.91 -0.02 5.16 16 40 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -75.35 354.99 0.25 -75.10 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.26 Total: 32.02 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 5.43 Total: -36.42 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.02 Total: -101.87 kcal Atomic # 8 Polarization: -138.55 SS G_CDS: -4.15 Total: -142.70 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: 132.51 SS G_CDS: -0.31 Total: 132.20 kcal Total: -75.35 0.25 -75.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274989298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.131 kcal (2) G-P(sol) polarization free energy of solvation -75.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds