Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47295 * 239.99758 * 3 2 1 5 5 H 1.48495 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47431 * 120.00012 * 3 2 1 7 7 C 1.38800 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00159 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00203 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47279 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99679 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00045 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11 16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13 17 17 C 1.34776 * 134.45584 * 204.64698 * 16 15 14 18 18 O 1.21281 * 120.00225 * 179.86905 * 17 16 15 19 19 C 1.50705 * 120.00221 * 359.86265 * 17 16 15 20 20 C 1.52998 * 109.47270 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.46766 * 180.02562 * 20 19 17 22 22 F 1.39895 * 109.47609 * 60.00183 * 21 20 19 23 23 F 1.39907 * 109.46891 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47074 * 299.99503 * 21 20 19 25 25 C 1.47582 * 91.05413 * 24.54887 * 16 15 14 26 26 H 0.96996 * 119.99559 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46887 * 60.00187 * 10 9 7 28 28 H 1.08997 * 109.47176 * 300.00056 * 10 9 7 29 29 H 0.97006 * 120.00313 * 0.02562 * 13 11 10 30 30 H 1.09002 * 112.94232 * 334.66719 * 14 13 11 31 31 H 1.08999 * 113.76704 * 205.15172 * 15 14 13 32 32 H 1.09002 * 113.76463 * 336.53966 * 15 14 13 33 33 H 1.09000 * 109.46504 * 300.00526 * 19 17 16 34 34 H 1.09001 * 109.46554 * 59.99813 * 19 17 16 35 35 H 1.09006 * 109.46845 * 300.00049 * 20 19 17 36 36 H 1.08993 * 109.47111 * 60.00000 * 20 19 17 37 37 H 1.08999 * 113.77186 * 221.15323 * 25 16 15 38 38 H 1.09004 * 113.76624 * 89.74800 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8438 -6.3432 0.0018 14 6 2.3301 -7.7152 0.0030 15 6 2.4819 -8.4351 -1.3493 16 7 3.7877 -8.9019 -0.8379 17 6 4.9383 -9.3033 -1.4138 18 8 5.8770 -9.6395 -0.7234 19 6 5.0583 -9.3344 -2.9157 20 6 6.4543 -9.8243 -3.3058 21 6 6.5763 -9.8552 -4.8305 22 9 6.3743 -8.5684 -5.3408 23 9 7.8526 -10.3038 -5.1872 24 9 5.6135 -10.7225 -5.3579 25 6 3.3269 -8.7499 0.5559 26 1 -0.4849 0.8400 0.0004 27 1 3.1243 -3.7315 0.8906 28 1 3.1243 -3.7315 -0.8894 29 1 3.8007 -6.1837 0.0022 30 1 1.3315 -7.7946 0.4328 31 1 1.7590 -9.2359 -1.5043 32 1 2.5585 -7.7588 -2.2008 33 1 4.3084 -10.0106 -3.3262 34 1 4.9003 -8.3320 -3.3136 35 1 7.2044 -9.1483 -2.8952 36 1 6.6118 -10.8267 -2.9079 37 1 4.0770 -8.3246 1.2227 38 1 2.8527 -9.6435 0.9617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737980532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = -197.231383 kcal Electronic energy + Delta-G solvation = -26271.381246 eV Core-core repulsion = 21633.263240 eV Total energy + Delta-G solvation = -4638.118006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.50888 -48.00443 -47.98398 -40.96525 -39.26980 -37.96621 -34.23237 -33.63223 -32.47278 -30.38835 -28.83749 -27.19342 -26.42549 -25.52776 -23.19634 -21.87733 -20.66012 -19.50437 -18.97695 -18.70918 -18.13981 -17.92381 -16.97134 -16.91009 -16.26988 -16.13161 -15.95117 -15.15222 -15.00817 -14.86194 -14.84193 -14.55032 -14.40279 -14.13438 -14.13386 -13.93521 -13.61104 -13.41446 -13.27702 -13.20545 -12.90053 -12.58480 -12.37763 -12.16657 -11.97128 -11.96029 -11.52577 -11.09522 -11.06957 -10.81311 -10.25969 -9.88270 -9.63966 -9.25969 -9.11710 -9.07290 -8.31660 -6.56282 -6.26245 -3.97592 2.09792 2.18904 2.46429 2.83775 2.86385 3.20896 3.23532 3.26659 3.33341 3.51092 3.56011 3.62534 3.94262 4.13243 4.16178 4.30588 4.39455 4.52255 4.80097 4.89534 4.95751 4.98172 5.08587 5.09180 5.12017 5.21653 5.23928 5.34920 5.43862 5.68979 5.79103 6.05556 6.40913 7.18648 7.49072 7.55276 7.65642 8.30491 8.41333 9.19268 10.81098 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002153 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.971786 B =12999.262034 C =14318.449213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.721 5.721 14 C 0.115 3.885 15 C 0.084 3.916 16 N -0.645 5.645 17 C 0.542 3.458 18 O -0.541 6.541 19 C -0.142 4.142 20 C -0.150 4.150 21 C 0.453 3.547 22 F -0.182 7.182 23 F -0.183 7.183 24 F -0.184 7.184 25 C 0.101 3.899 26 H 0.269 0.731 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.402 0.598 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 -22.696 -5.848 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.324 3.676 12 O -0.385 6.385 13 N -0.375 5.375 14 C 0.007 3.993 15 C -0.040 4.040 16 N -0.381 5.381 17 C 0.332 3.668 18 O -0.418 6.418 19 C -0.182 4.182 20 C -0.189 4.189 21 C 0.399 3.601 22 F -0.163 7.163 23 F -0.164 7.164 24 F -0.166 7.166 25 C -0.022 4.022 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.236 0.764 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.434 -23.141 -5.609 25.611 hybrid contribution 2.462 1.267 -0.392 2.796 sum 11.896 -21.873 -6.001 25.612 Atomic orbital electron populations 1.70002 1.05948 1.27647 1.46662 1.24991 0.95042 0.99053 0.94447 0.86216 0.79241 0.81177 0.78836 1.19913 1.20789 1.19924 1.22818 0.94877 0.91595 1.59244 0.90944 1.85380 1.04645 0.96346 1.96753 1.23540 1.06794 0.95057 1.05113 1.20384 0.86457 0.86223 0.74569 1.90713 1.15238 1.85474 1.47084 1.45714 1.10146 1.04072 1.77563 1.22312 0.99435 0.82126 0.95396 1.23974 0.82859 0.97602 0.99575 1.50157 1.12248 1.66115 1.09604 1.19927 0.81330 0.75952 0.89611 1.90746 1.37717 1.48340 1.65026 1.21563 0.97349 1.05389 0.93932 1.22606 1.00380 1.08018 0.87888 1.20557 0.73613 0.73583 0.92369 1.93210 1.94716 1.38969 1.89426 1.93204 1.40326 1.89300 1.93566 1.93192 1.64106 1.70363 1.88910 1.23609 0.95581 0.98012 0.84966 0.92075 0.89049 0.89106 0.76393 0.85893 0.88145 0.89068 0.87491 0.87316 0.86307 0.86446 0.89218 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 11 C 0.54 8.80 7.85 -10.99 -0.09 8.71 16 12 O -0.51 -10.27 15.48 5.56 0.09 -10.19 16 13 N -0.72 -8.01 5.37 -55.34 -0.30 -8.31 16 14 C 0.11 0.99 4.40 -70.14 -0.31 0.68 16 15 C 0.08 0.57 8.43 -2.84 -0.02 0.54 16 16 N -0.64 -5.06 3.61 -178.32 -0.64 -5.71 16 17 C 0.54 4.90 8.06 -10.98 -0.09 4.82 16 18 O -0.54 -6.75 16.71 5.56 0.09 -6.66 16 19 C -0.14 -0.89 5.21 -27.88 -0.15 -1.04 16 20 C -0.15 -0.94 4.55 -26.73 -0.12 -1.06 16 21 C 0.45 3.30 3.16 37.16 0.12 3.41 16 22 F -0.18 -1.53 16.80 2.25 0.04 -1.50 16 23 F -0.18 -1.52 17.32 2.25 0.04 -1.48 16 24 F -0.18 -1.44 16.80 2.25 0.04 -1.40 16 25 C 0.10 0.72 8.58 -2.96 -0.03 0.69 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.40 3.79 8.74 -40.82 -0.36 3.43 16 30 H 0.12 1.14 7.51 -51.93 -0.39 0.75 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.52 7.80 -51.93 -0.41 0.12 16 34 H 0.11 0.62 7.80 -51.93 -0.41 0.21 16 35 H 0.12 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.12 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -35.19 361.15 -6.45 -41.64 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.48 Total: -0.74 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.26 Total: 1.49 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.21 Total: -38.87 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.85 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.11 Total: -4.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.19 -6.45 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737980532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.592 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds