Wall clock time and date at job start Sat Apr 11 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47295 * 239.99758 * 3 2 1 5 5 H 1.48495 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47431 * 120.00012 * 3 2 1 7 7 C 1.38800 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00159 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00203 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47279 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99679 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00045 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11 16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13 17 17 C 1.34776 * 134.45584 * 204.64698 * 16 15 14 18 18 O 1.21281 * 120.00225 * 179.86905 * 17 16 15 19 19 C 1.50705 * 120.00221 * 359.86265 * 17 16 15 20 20 C 1.52998 * 109.47270 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.46766 * 180.02562 * 20 19 17 22 22 F 1.39895 * 109.47609 * 60.00183 * 21 20 19 23 23 F 1.39907 * 109.46891 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47074 * 299.99503 * 21 20 19 25 25 C 1.47582 * 91.05413 * 24.54887 * 16 15 14 26 26 H 0.96996 * 119.99559 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46887 * 60.00187 * 10 9 7 28 28 H 1.08997 * 109.47176 * 300.00056 * 10 9 7 29 29 H 0.97006 * 120.00313 * 0.02562 * 13 11 10 30 30 H 1.09002 * 112.94232 * 334.66719 * 14 13 11 31 31 H 1.08999 * 113.76704 * 205.15172 * 15 14 13 32 32 H 1.09002 * 113.76463 * 336.53966 * 15 14 13 33 33 H 1.09000 * 109.46504 * 300.00526 * 19 17 16 34 34 H 1.09001 * 109.46554 * 59.99813 * 19 17 16 35 35 H 1.09006 * 109.46845 * 300.00049 * 20 19 17 36 36 H 1.08993 * 109.47111 * 60.00000 * 20 19 17 37 37 H 1.08999 * 113.77186 * 221.15323 * 25 16 15 38 38 H 1.09004 * 113.76624 * 89.74800 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8438 -6.3432 0.0018 14 6 2.3301 -7.7152 0.0030 15 6 2.4819 -8.4351 -1.3493 16 7 3.7877 -8.9019 -0.8379 17 6 4.9383 -9.3033 -1.4138 18 8 5.8770 -9.6395 -0.7234 19 6 5.0583 -9.3344 -2.9157 20 6 6.4543 -9.8243 -3.3058 21 6 6.5763 -9.8552 -4.8305 22 9 6.3743 -8.5684 -5.3408 23 9 7.8526 -10.3038 -5.1872 24 9 5.6135 -10.7225 -5.3579 25 6 3.3269 -8.7499 0.5559 26 1 -0.4849 0.8400 0.0004 27 1 3.1243 -3.7315 0.8906 28 1 3.1243 -3.7315 -0.8894 29 1 3.8007 -6.1837 0.0022 30 1 1.3315 -7.7946 0.4328 31 1 1.7590 -9.2359 -1.5043 32 1 2.5585 -7.7588 -2.2008 33 1 4.3084 -10.0106 -3.3262 34 1 4.9003 -8.3320 -3.3136 35 1 7.2044 -9.1483 -2.8952 36 1 6.6118 -10.8267 -2.9079 37 1 4.0770 -8.3246 1.2227 38 1 2.8527 -9.6435 0.9617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737980532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:34 Heat of formation + Delta-G solvation = -222.015730 kcal Electronic energy + Delta-G solvation = -26272.455976 eV Core-core repulsion = 21633.263240 eV Total energy + Delta-G solvation = -4639.192736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.11652 -48.62315 -48.59568 -41.71919 -40.32799 -38.86839 -34.83292 -34.69532 -34.56217 -31.42739 -29.92423 -27.85985 -27.60411 -27.00140 -23.83731 -22.70263 -21.72444 -20.17073 -19.83277 -19.57226 -19.32774 -18.70785 -18.04536 -17.60526 -17.21776 -16.89557 -16.86388 -16.78859 -16.31971 -16.05177 -15.59062 -15.49183 -15.08409 -15.00112 -14.76354 -14.75266 -14.72787 -14.41486 -14.30250 -14.05009 -13.87020 -13.44473 -13.41524 -13.15937 -12.90755 -12.85384 -12.76870 -12.62462 -12.44411 -12.22435 -11.74257 -11.12181 -11.01344 -10.98632 -10.27316 -10.20002 -9.82097 -8.64458 -8.33988 -6.11088 1.27046 1.44096 1.46453 1.47949 1.55755 1.56626 1.58359 1.88197 2.19617 2.28835 2.77095 2.95999 3.00271 3.06557 3.31218 3.32874 3.50337 3.73642 3.89222 3.92006 3.95019 4.28379 4.31696 4.35172 4.44748 4.53236 4.60064 4.61865 4.64527 4.74179 4.79682 4.83916 5.42819 5.47538 6.20413 6.41518 6.56569 6.99235 7.07856 7.19894 8.74705 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002153 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.971786 B =12999.262034 C =14318.449213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.144 6.144 10 C -0.133 4.133 11 C 0.544 3.456 12 O -0.554 6.554 13 N -0.698 5.698 14 C 0.103 3.897 15 C 0.094 3.906 16 N -0.645 5.645 17 C 0.540 3.460 18 O -0.580 6.580 19 C -0.138 4.138 20 C -0.144 4.144 21 C 0.456 3.544 22 F -0.189 7.189 23 F -0.190 7.190 24 F -0.186 7.186 25 C 0.107 3.893 26 H 0.271 0.729 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.413 0.587 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.350 -23.450 -6.179 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.083 5.917 10 C -0.284 4.284 11 C 0.330 3.670 12 O -0.431 6.431 13 N -0.351 5.351 14 C -0.003 4.003 15 C -0.029 4.029 16 N -0.381 5.381 17 C 0.331 3.669 18 O -0.461 6.461 19 C -0.177 4.177 20 C -0.183 4.183 21 C 0.402 3.598 22 F -0.170 7.170 23 F -0.171 7.171 24 F -0.168 7.168 25 C -0.015 4.015 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.249 0.751 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.888 -23.931 -5.947 26.955 hybrid contribution 2.053 1.363 -0.281 2.480 sum 12.941 -22.568 -6.227 26.750 Atomic orbital electron populations 1.70163 1.07855 1.28653 1.47938 1.26079 0.95948 1.03191 0.93803 0.85048 0.77849 0.75967 0.79427 1.18745 1.20432 1.18811 1.23172 0.95312 0.92212 1.58895 0.90078 1.85494 1.10180 0.98945 1.97041 1.23388 1.03702 0.94656 1.06699 1.19922 0.86167 0.86299 0.74634 1.90706 1.16960 1.85861 1.49573 1.45430 1.10040 1.04213 1.75454 1.22530 0.99639 0.80680 0.97454 1.24044 0.82707 0.98025 0.98152 1.50222 1.12362 1.65435 1.10051 1.20310 0.80909 0.75231 0.90458 1.90732 1.39006 1.50273 1.66062 1.21578 0.97741 1.06345 0.92060 1.22561 1.00542 1.08314 0.86849 1.20658 0.73207 0.73148 0.92751 1.93196 1.94729 1.39480 1.89609 1.93190 1.40875 1.89362 1.93680 1.93187 1.64145 1.70417 1.89035 1.23679 0.94876 0.98224 0.84739 0.91988 0.87458 0.87356 0.75087 0.86334 0.85320 0.89041 0.85725 0.86495 0.86439 0.86029 0.89670 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.71 13.22 21.65 0.29 -54.42 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 8 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 9 S -0.14 -7.61 20.57 -56.49 -1.16 -8.77 16 10 C -0.13 -4.86 6.16 71.24 0.44 -4.43 16 11 C 0.54 17.33 7.85 87.66 0.69 18.01 16 12 O -0.55 -22.31 15.48 -3.03 -0.05 -22.36 16 13 N -0.70 -14.18 5.37 -447.38 -2.40 -16.58 16 14 C 0.10 1.55 4.40 46.75 0.21 1.75 16 15 C 0.09 0.99 8.43 86.44 0.73 1.72 16 16 N -0.65 -8.42 3.61 -836.48 -3.02 -11.44 16 17 C 0.54 8.63 8.06 87.66 0.71 9.34 16 18 O -0.58 -13.70 16.71 -3.03 -0.05 -13.75 16 19 C -0.14 -1.41 5.21 29.85 0.16 -1.25 16 20 C -0.14 -1.58 4.55 30.59 0.14 -1.44 16 21 C 0.46 6.02 3.16 71.98 0.23 6.24 16 22 F -0.19 -2.93 16.80 44.97 0.76 -2.17 16 23 F -0.19 -2.98 17.32 44.97 0.78 -2.20 16 24 F -0.19 -2.61 16.80 44.97 0.76 -1.85 16 25 C 0.11 1.25 8.58 86.49 0.74 1.99 16 26 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 28 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 29 H 0.41 6.79 8.74 -92.70 -0.81 5.98 16 30 H 0.12 2.00 7.51 -2.39 -0.02 1.98 16 31 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.12 0.85 7.80 -2.39 -0.02 0.83 16 34 H 0.12 1.04 7.80 -2.39 -0.02 1.02 16 35 H 0.12 1.34 8.10 -2.38 -0.02 1.32 16 36 H 0.12 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.01 361.15 3.37 -74.64 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.31 Total: 10.66 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.14 Total: 3.42 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -5.14 Total: -82.44 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.10 Total: -36.11 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 2.29 Total: -6.22 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -78.01 3.37 -74.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737980532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.372 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds