Wall clock time and date at job start Sat Apr 11 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48500 * 109.47141 * 270.00030 * 3 2 1 5 5 H 1.48494 * 109.47291 * 29.99903 * 3 2 1 6 6 H 1.48505 * 109.47411 * 150.00222 * 3 2 1 7 7 C 1.37878 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99904 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.64366 * 56.85455 * 9 7 2 11 11 C 1.55157 * 110.87087 * 293.60744 * 9 7 2 12 12 C 1.55124 * 101.48836 * 205.89984 * 11 9 7 13 13 N 1.47421 * 104.72249 * 37.29488 * 12 11 9 14 14 S 1.65602 * 125.65006 * 155.82113 * 13 12 11 15 15 O 1.42095 * 106.40399 * 156.15576 * 14 13 12 16 16 O 1.42098 * 106.40044 * 23.22754 * 14 13 12 17 17 C 1.76211 * 107.21475 * 269.69329 * 14 13 12 18 18 C 1.38377 * 119.92295 * 269.72256 * 17 14 13 19 19 C 1.38341 * 120.28853 * 180.27516 * 18 17 14 20 20 C 1.37971 * 120.14845 * 0.02562 * 19 18 17 21 21 C 1.39559 * 119.85206 * 0.02562 * 20 19 18 22 22 C 1.47848 * 120.14869 * 180.02562 * 21 20 19 23 23 N 1.34774 * 119.99620 * 359.97438 * 22 21 20 24 24 O 1.21550 * 120.00169 * 179.97438 * 22 21 20 25 25 C 1.37935 * 119.92799 * 89.99968 * 17 14 13 26 26 C 1.47024 * 108.70188 * 335.55566 * 13 12 11 27 27 H 0.97001 * 119.99670 * 359.97438 * 1 2 3 28 28 H 0.96704 * 114.00392 * 303.14404 * 10 9 7 29 29 H 1.09002 * 111.00796 * 324.14041 * 11 9 7 30 30 H 1.09006 * 111.00486 * 87.94898 * 11 9 7 31 31 H 1.09007 * 110.49498 * 278.45343 * 12 11 9 32 32 H 1.09003 * 110.34759 * 156.06415 * 12 11 9 33 33 H 1.08000 * 119.85906 * 0.25313 * 18 17 14 34 34 H 1.08005 * 119.92275 * 179.97438 * 19 18 17 35 35 H 1.07995 * 120.07672 * 180.02562 * 20 19 18 36 36 H 0.97006 * 120.00449 * 359.97438 * 23 22 21 37 37 H 0.96998 * 119.99966 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.06917 * 359.70188 * 25 17 14 39 39 H 1.08998 * 109.88158 * 120.70353 * 26 13 12 40 40 H 1.08997 * 109.88113 * 241.86679 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 8 0.3664 -2.5691 -1.1217 11 6 0.4713 -2.6885 1.3263 12 6 0.3732 -4.2344 1.4093 13 7 1.6627 -4.7203 0.8856 14 16 2.3563 -6.1832 1.2339 15 8 3.2322 -6.4791 0.1549 16 8 1.2987 -7.0433 1.6349 17 6 3.3752 -5.9526 2.6530 18 6 4.7036 -5.5972 2.4985 19 6 5.5118 -5.4197 3.6072 20 6 4.9976 -5.5970 4.8751 21 6 3.6590 -5.9565 5.0378 22 6 3.1009 -6.1476 6.3936 23 7 3.8856 -5.9750 7.4757 24 8 1.9345 -6.4603 6.5322 25 6 2.8484 -6.1325 3.9150 26 6 2.2281 -3.6937 -0.0021 27 1 -0.4850 0.8401 0.0004 28 1 -0.2682 -1.8409 -1.1678 29 1 1.0312 -2.2834 2.1693 30 1 -0.5194 -2.2379 1.2654 31 1 -0.4483 -4.5983 0.7920 32 1 0.2403 -4.5508 2.4439 33 1 5.1113 -5.4580 1.5082 34 1 6.5479 -5.1427 3.4797 35 1 5.6295 -5.4577 5.7398 36 1 4.8165 -5.7258 7.3650 37 1 3.5196 -6.1006 8.3651 38 1 1.8114 -6.4096 4.0341 39 1 3.2018 -3.3764 0.3711 40 1 2.3274 -4.0910 -1.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771744901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:48 Heat of formation + Delta-G solvation = -155.481792 kcal Electronic energy + Delta-G solvation = -27900.870924 eV Core-core repulsion = 23806.420057 eV Total energy + Delta-G solvation = -4094.450868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25189 -39.77982 -39.33959 -38.46906 -37.08809 -36.11638 -35.04694 -34.08664 -32.34979 -32.26326 -30.89359 -30.02010 -26.70152 -25.44779 -24.39347 -23.19573 -22.08971 -21.57000 -20.23346 -19.56878 -19.21130 -18.53186 -18.19022 -17.51852 -17.21195 -16.95468 -16.88840 -16.31348 -15.97574 -15.89875 -15.66080 -15.35447 -15.03620 -14.91559 -14.62736 -13.97944 -13.91644 -13.77833 -13.46258 -13.39340 -13.36799 -13.30206 -13.14710 -12.87579 -12.80422 -12.61595 -12.27050 -12.19958 -11.98547 -11.94639 -11.33772 -11.19378 -10.84908 -10.62909 -10.56684 -10.21208 -10.08783 -9.97041 -8.19963 -6.34390 -0.84271 -0.49286 -0.15761 1.45641 1.48706 1.54701 1.56842 1.89177 2.35338 2.42208 2.49446 2.68348 3.02110 3.11238 3.64513 3.66328 3.75604 3.83377 3.99498 4.05729 4.16063 4.31471 4.39446 4.42250 4.62310 4.69246 4.72863 4.85509 4.93624 4.97939 5.06554 5.18271 5.22028 5.33811 5.52969 5.55338 5.58897 5.79408 5.82129 6.11333 6.31624 6.70445 7.19215 7.36796 7.50372 8.86554 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003924 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.808160 B = 7134.676640 C = 7975.696059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.234 3.766 10 O -0.597 6.597 11 C -0.125 4.125 12 C 0.122 3.878 13 N -1.008 6.008 14 S 2.716 3.284 15 O -0.974 6.974 16 O -0.982 6.982 17 C -0.688 4.688 18 C -0.004 4.004 19 C -0.134 4.134 20 C -0.015 4.015 21 C -0.174 4.174 22 C 0.562 3.438 23 N -0.822 5.822 24 O -0.587 6.587 25 C 0.017 3.983 26 C 0.139 3.861 27 H 0.270 0.730 28 H 0.381 0.619 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.420 0.580 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.911 -7.690 13.737 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.169 4.169 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.193 3.807 10 O -0.407 6.407 11 C -0.164 4.164 12 C -0.002 4.002 13 N -0.846 5.846 14 S 2.811 3.189 15 O -0.965 6.965 16 O -0.972 6.972 17 C -0.777 4.777 18 C -0.024 4.024 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.178 4.178 22 C 0.348 3.652 23 N -0.388 5.388 24 O -0.468 6.468 25 C -0.004 4.004 26 C 0.014 3.986 27 H 0.080 0.920 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.173 0.827 34 H 0.202 0.798 35 H 0.204 0.796 36 H 0.253 0.747 37 H 0.249 0.751 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.274 -9.183 13.093 20.784 hybrid contribution -0.033 1.793 0.658 1.910 sum 13.241 -7.391 13.752 20.471 Atomic orbital electron populations 1.69668 1.06923 1.28325 1.50431 1.25664 0.95758 1.02231 0.93209 0.85509 0.78802 0.78929 0.78068 1.20525 1.20988 1.19056 1.21841 0.93936 0.91325 1.52379 0.91588 1.19688 0.86594 0.91240 0.83187 1.86088 1.51642 1.53126 1.49809 1.23157 1.01368 0.92093 0.99825 1.22136 0.83977 0.95811 0.98302 1.58397 1.31452 1.35377 1.59398 1.00905 0.72837 0.71353 0.73790 1.93527 1.67190 1.82919 1.52817 1.93534 1.55997 1.63473 1.84233 1.30754 1.10947 1.19875 1.16135 1.21559 0.90428 0.88030 1.02366 1.21770 1.02377 1.00138 0.90957 1.22122 0.92303 0.88948 0.99976 1.20087 0.96483 1.08599 0.92664 1.18295 0.85260 0.75910 0.85736 1.43478 1.15476 1.71628 1.08183 1.90838 1.18909 1.49612 1.87450 1.20975 0.99976 0.88815 0.90639 1.21755 0.97037 0.87349 0.92451 0.92027 0.76804 0.91791 0.91356 0.91967 0.90111 0.82695 0.79792 0.79617 0.74713 0.75119 0.85138 0.89747 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.63 10.70 21.45 0.23 -46.40 16 2 C 0.03 1.59 5.28 84.65 0.45 2.04 16 3 Si 0.96 39.79 29.54 68.60 2.03 41.81 16 4 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -27.91 8.22 25.60 0.21 -27.70 16 8 H 0.07 3.20 7.53 -2.91 -0.02 3.18 16 9 C 0.23 11.12 0.85 -10.35 -0.01 11.11 16 10 O -0.60 -30.59 13.08 -148.98 -1.95 -32.54 16 11 C -0.12 -5.45 5.69 32.06 0.18 -5.27 16 12 C 0.12 4.74 6.98 86.93 0.61 5.35 16 13 N -1.01 -38.29 3.70 -506.03 -1.87 -40.16 16 14 S 2.72 94.81 5.94 -56.49 -0.34 94.47 16 15 O -0.97 -36.57 16.85 -128.00 -2.16 -38.73 16 16 O -0.98 -38.68 16.86 -128.00 -2.16 -40.84 16 17 C -0.69 -19.47 5.97 22.23 0.13 -19.34 16 18 C 0.00 -0.09 9.52 22.33 0.21 0.12 16 19 C -0.13 -1.83 10.03 22.23 0.22 -1.61 16 20 C -0.02 -0.19 9.54 22.53 0.21 0.03 16 21 C -0.17 -3.76 5.87 -20.09 -0.12 -3.87 16 22 C 0.56 12.35 8.05 86.79 0.70 13.05 16 23 N -0.82 -8.18 8.82 -175.61 -1.55 -9.73 16 24 O -0.59 -19.08 17.18 -3.87 -0.07 -19.15 16 25 C 0.02 0.47 9.06 22.53 0.20 0.68 16 26 C 0.14 5.79 6.34 86.73 0.55 6.34 16 27 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 28 H 0.38 19.89 6.98 -74.05 -0.52 19.37 16 29 H 0.06 2.77 8.05 -2.39 -0.02 2.75 16 30 H 0.07 3.17 7.77 -2.38 -0.02 3.15 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.16 3.07 7.60 -2.91 -0.02 3.05 16 34 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.19 0.23 6.40 -2.91 -0.02 0.21 16 36 H 0.42 0.72 6.87 -92.70 -0.64 0.09 16 37 H 0.42 3.20 8.93 -92.71 -0.83 2.38 16 38 H 0.13 4.20 7.21 -2.91 -0.02 4.18 16 39 H 0.08 3.17 7.63 -2.39 -0.02 3.15 16 40 H 0.06 2.48 8.07 -2.39 -0.02 2.46 16 Total: -1.00 -74.44 351.09 -5.13 -79.57 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.85 Total: 30.77 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 3.56 Total: -19.08 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -3.19 Total: -96.28 kcal Atomic # 8 Polarization: -124.93 SS G_CDS: -6.33 Total: -131.26 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: 94.81 SS G_CDS: -0.34 Total: 94.47 kcal Total: -74.44 -5.13 -79.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771744901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.916 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds