Wall clock time and date at job start Sat Apr 11 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 H 1.08994 * 109.46844 * 55.00015 * 3 2 1 5 5 C 1.50693 * 109.47163 * 175.00057 * 3 2 1 6 6 H 1.07997 * 120.00095 * 119.99698 * 5 3 2 7 7 C 1.37877 * 119.99952 * 300.00173 * 5 3 2 8 8 N 1.31514 * 120.00383 * 359.97438 * 7 5 3 9 9 Si 1.86812 * 119.99895 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47064 * 119.99504 * 9 7 5 12 12 H 1.48499 * 109.46733 * 239.99880 * 9 7 5 13 13 N 1.46494 * 109.46959 * 295.00174 * 3 2 1 14 14 C 1.34777 * 120.00153 * 84.99912 * 13 3 2 15 15 O 1.21364 * 120.00053 * 0.02562 * 14 13 3 16 16 C 1.49340 * 119.99907 * 180.02562 * 14 13 3 17 17 O 1.21376 * 120.00440 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99907 * 180.02562 * 16 14 13 19 19 C 1.39289 * 120.00347 * 185.39307 * 18 16 14 20 20 C 1.38177 * 123.51660 * 353.66991 * 19 18 16 21 21 C 1.33556 * 115.08786 * 180.29051 * 20 19 18 22 22 S 1.70563 * 111.23307 * 359.76968 * 21 20 19 23 23 C 1.37602 * 123.52485 * 173.52605 * 19 18 16 24 24 C 1.41512 * 125.48903 * 0.02562 * 23 19 18 25 25 O 1.21697 * 120.00014 * 359.71017 * 24 23 19 26 26 O 1.34974 * 120.00003 * 179.44236 * 24 23 19 27 27 C 1.42891 * 117.00073 * 179.97438 * 26 24 23 28 28 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46904 * 299.99782 * 1 2 3 30 30 H 1.08997 * 109.47265 * 59.99856 * 1 2 3 31 31 H 1.08999 * 109.47266 * 239.99822 * 2 1 3 32 32 H 1.08997 * 109.47265 * 120.00144 * 2 1 3 33 33 H 0.97003 * 120.00355 * 180.02562 * 8 7 5 34 34 H 0.97006 * 120.00245 * 265.00355 * 13 3 2 35 35 H 0.97004 * 120.00023 * 5.39677 * 18 16 14 36 36 H 1.07995 * 122.46053 * 0.08212 * 20 19 18 37 37 H 1.08002 * 124.38474 * 179.79945 * 21 20 19 38 38 H 1.08999 * 109.47478 * 179.97438 * 27 26 24 39 39 H 1.09003 * 109.47244 * 300.00104 * 27 26 24 40 40 H 1.08998 * 109.47515 * 59.99798 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.5987 1.5463 0.1941 11 1 6.3990 1.6168 2.6101 12 1 6.4970 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6327 -0.4334 16 6 0.0398 3.3315 -2.6432 17 8 0.8149 3.3636 -3.5767 18 7 -1.1773 3.8988 -2.7582 19 6 -1.5894 4.4216 -3.9817 20 6 -0.7671 4.5121 -5.0885 21 6 -1.3342 5.0468 -6.1731 22 16 -2.9591 5.4712 -5.8749 23 6 -2.8585 4.8991 -4.2155 24 6 -3.9113 4.9309 -3.2704 25 8 -3.7308 4.5074 -2.1439 26 8 -5.1141 5.4359 -3.6168 27 6 -6.1311 5.4361 -2.6130 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8293 -0.0604 2.9503 34 1 2.2719 2.1231 -1.9978 35 1 -1.7664 3.9432 -1.9888 36 1 0.2599 4.1783 -5.0765 37 1 -0.8294 5.1912 -7.1169 38 1 -7.0447 5.8681 -3.0214 39 1 -6.3247 4.4127 -2.2916 40 1 -5.7996 6.0282 -1.7600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275774527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:39 Heat of formation + Delta-G solvation = -110.946212 kcal Electronic energy + Delta-G solvation = -27064.006211 eV Core-core repulsion = 22971.486551 eV Total energy + Delta-G solvation = -4092.519660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31457 -40.46523 -38.94133 -37.59994 -36.54840 -35.44920 -34.13763 -32.45630 -31.02864 -30.73061 -27.92970 -27.34926 -25.79860 -23.99352 -22.90900 -22.45508 -20.82189 -19.76093 -19.56306 -18.88131 -18.58094 -17.35006 -16.75809 -16.68837 -16.11021 -15.84279 -15.76257 -15.35105 -15.23629 -14.47611 -14.40203 -14.08619 -13.77308 -13.74653 -13.43022 -13.00232 -12.91319 -12.77123 -12.28441 -12.13854 -11.63638 -11.48577 -11.32737 -11.10534 -11.01497 -10.96563 -10.94299 -10.89610 -10.72670 -10.36406 -10.28813 -9.71762 -9.16988 -9.15492 -9.11406 -8.59559 -8.20681 -8.07314 -6.19594 -4.29518 -0.03077 1.16293 1.53409 1.57804 2.09734 2.55367 2.63996 2.77523 3.21371 3.29668 3.32945 3.60864 3.94893 4.29773 4.55006 4.79327 4.86046 4.91687 4.98380 5.02290 5.12698 5.28971 5.36262 5.67959 5.79259 6.09390 6.30502 6.31902 6.35419 6.54053 6.92038 6.96907 7.10033 7.13299 7.25233 7.43233 7.49874 7.59896 7.70487 7.78697 8.05535 8.37389 8.57289 8.81987 9.37378 10.85829 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.002667 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.892770 B =10495.846372 C =11513.695221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.519 6.519 16 C 0.510 3.490 17 O -0.496 6.496 18 N -0.621 5.621 19 C 0.254 3.746 20 C -0.181 4.181 21 C -0.198 4.198 22 S 0.249 5.751 23 C -0.343 4.343 24 C 0.547 3.453 25 O -0.509 6.509 26 O -0.353 6.353 27 C 0.036 3.964 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.439 0.561 36 H 0.191 0.809 37 H 0.178 0.822 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 10.008 -16.103 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.272 3.728 15 O -0.396 6.396 16 C 0.294 3.706 17 O -0.369 6.369 18 N -0.270 5.270 19 C 0.139 3.861 20 C -0.213 4.213 21 C -0.336 4.336 22 S 0.515 5.485 23 C -0.465 4.465 24 C 0.395 3.605 25 O -0.400 6.400 26 O -0.270 6.270 27 C -0.058 4.058 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.284 0.716 36 H 0.207 0.793 37 H 0.195 0.805 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.654 10.370 -16.323 24.880 hybrid contribution 1.987 -0.674 1.081 2.360 sum -13.667 9.696 -15.242 22.652 Atomic orbital electron populations 1.21865 0.98262 0.98514 1.01092 1.21970 0.92653 0.99322 1.02829 1.19058 0.94874 0.89434 0.79978 0.92623 1.21227 0.90209 1.39445 1.06619 0.91670 1.24878 0.98859 0.94588 0.95233 1.69892 1.35208 1.37414 1.09306 0.86350 0.84487 0.77845 0.78205 1.19621 1.20820 1.20797 1.46464 1.13109 1.52512 1.19329 1.19408 0.84757 0.81859 0.86730 1.90795 1.50946 1.58954 1.38940 1.21309 0.81048 0.78230 0.90042 1.90533 1.50531 1.56077 1.39808 1.43437 1.18121 1.53726 1.11716 1.17327 0.90305 0.91447 0.87050 1.20850 1.04793 1.05206 0.90475 1.25487 1.00651 1.03552 1.03941 1.83059 1.06704 1.57314 1.01398 1.21859 0.96480 1.26270 1.01850 1.18179 0.81604 0.74845 0.85916 1.90849 1.82137 1.45617 1.21374 1.86160 1.21267 1.75555 1.43978 1.22919 0.88739 1.02982 0.91163 0.95389 0.92864 0.94676 0.94605 0.87777 0.92456 0.76349 0.71596 0.79250 0.80458 0.87973 0.91882 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.54 2.24 -69.09 -0.15 6.38 16 4 H 0.06 1.55 7.58 -51.93 -0.39 1.15 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.07 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.01 11.29 55.43 0.63 -23.39 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.66 -13.86 5.01 -55.41 -0.28 -14.14 16 14 C 0.49 9.88 6.45 -11.64 -0.08 9.81 16 15 O -0.52 -11.51 13.62 5.48 0.07 -11.44 16 16 C 0.51 8.77 7.84 -11.64 -0.09 8.68 16 17 O -0.50 -8.37 13.25 5.47 0.07 -8.30 16 18 N -0.62 -9.85 5.31 -10.90 -0.06 -9.91 16 19 C 0.25 3.53 6.63 -84.73 -0.56 2.96 16 20 C -0.18 -2.18 9.09 -41.24 -0.37 -2.55 16 21 C -0.20 -1.72 10.89 29.09 0.32 -1.40 16 22 S 0.25 2.13 22.82 -107.50 -2.45 -0.32 16 23 C -0.34 -4.28 6.29 -38.57 -0.24 -4.52 16 24 C 0.55 7.27 7.72 31.98 0.25 7.52 16 25 O -0.51 -8.02 14.26 -19.42 -0.28 -8.30 16 26 O -0.35 -3.84 10.23 -41.24 -0.42 -4.26 16 27 C 0.04 0.29 10.45 101.05 1.06 1.35 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 30 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.40 7.71 8.01 -40.82 -0.33 7.38 16 35 H 0.44 7.34 5.74 -40.82 -0.23 7.11 16 36 H 0.19 2.49 5.21 -52.56 -0.27 2.22 16 37 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.06 0.52 8.12 -51.93 -0.42 0.09 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -29.67 353.00 -6.83 -36.51 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.31 Total: 13.13 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -0.10 Total: 9.83 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.29 Total: -47.44 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.55 Total: -32.30 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.45 Total: -0.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.67 -6.83 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275774527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.441 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds