Wall clock time and date at job start Sat Apr 11 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34878 * 117.00039 * 2 1 4 4 O 1.21637 * 120.00194 * 0.02562 * 3 2 1 5 5 C 1.46473 * 120.00260 * 179.97438 * 3 2 1 6 6 C 1.44618 * 123.60893 * 0.20406 * 5 3 2 7 7 C 1.32584 * 113.17148 * 180.25677 * 6 5 3 8 8 S 1.75459 * 110.83011 * 359.75412 * 7 6 5 9 9 C 1.37267 * 123.61211 * 179.97438 * 5 3 2 10 10 N 1.38359 * 124.66170 * 0.03411 * 9 5 3 11 11 C 1.34772 * 119.99661 * 179.71601 * 10 9 5 12 12 O 1.21383 * 120.00493 * 359.97438 * 11 10 9 13 13 C 1.49303 * 119.99788 * 180.02562 * 11 10 9 14 14 O 1.21365 * 119.99878 * 5.91785 * 13 11 10 15 15 N 1.34775 * 120.00042 * 185.92228 * 13 11 10 16 16 C 1.46500 * 120.00104 * 356.42646 * 15 13 11 17 17 C 1.46502 * 120.00156 * 176.42445 * 15 13 11 18 18 H 1.09009 * 109.46754 * 359.97438 * 17 15 13 19 19 C 1.53001 * 109.46897 * 240.00272 * 17 15 13 20 20 C 1.50691 * 109.47334 * 119.99923 * 17 15 13 21 21 H 1.08007 * 119.99691 * 0.02562 * 20 17 15 22 22 C 1.37870 * 120.00151 * 180.02562 * 20 17 15 23 23 N 1.31513 * 120.00072 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00055 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.47481 * 270.00073 * 24 22 20 26 26 H 1.48502 * 109.47112 * 30.00186 * 24 22 20 27 27 H 1.48502 * 109.47224 * 149.99765 * 24 22 20 28 28 H 1.09005 * 109.46867 * 60.00070 * 1 2 3 29 29 H 1.09001 * 109.46542 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47159 * 299.99699 * 1 2 3 31 31 H 1.08001 * 123.41498 * 359.97438 * 6 5 3 32 32 H 1.07998 * 124.58309 * 179.78676 * 7 6 5 33 33 H 0.97001 * 120.00033 * 359.72118 * 10 9 5 34 34 H 1.09001 * 109.46824 * 275.98474 * 16 15 13 35 35 H 1.08999 * 109.47287 * 35.98253 * 16 15 13 36 36 H 1.08999 * 109.47489 * 155.98148 * 16 15 13 37 37 H 1.09000 * 109.47622 * 59.99605 * 19 17 15 38 38 H 1.09008 * 109.46561 * 179.97438 * 19 17 15 39 39 H 1.08996 * 109.47022 * 299.99513 * 19 17 15 40 40 H 0.96998 * 120.00070 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4019 2.2219 0.0005 5 6 3.5271 1.2785 0.0006 6 6 4.3896 0.1176 -0.0031 7 6 5.6791 0.4258 0.0036 8 16 5.9048 2.1658 0.0079 9 6 4.2260 2.4599 0.0001 10 7 3.6473 3.7166 -0.0003 11 6 4.4255 4.8168 0.0050 12 8 5.6342 4.7053 0.0107 13 6 3.8010 6.1730 0.0052 14 8 2.5972 6.2866 0.1089 15 7 4.5741 7.2709 -0.1099 16 6 6.0324 7.1384 -0.1564 17 6 3.9562 8.5970 -0.1886 18 1 2.8720 8.4960 -0.1391 19 6 4.3461 9.2636 -1.5094 20 6 4.4355 9.4436 0.9622 21 1 5.1312 9.0349 1.6802 22 6 3.9860 10.7398 1.0985 23 7 3.1393 11.2376 0.2239 24 14 4.5796 11.7891 2.5254 25 1 3.6656 11.6137 3.6827 26 1 5.9515 11.3708 2.9103 27 1 4.5936 13.2169 2.1176 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0206 -0.8974 -0.0062 32 1 6.4819 -0.2966 0.0056 33 1 2.6814 3.8057 -0.0043 34 1 6.4242 7.0781 0.8589 35 1 6.2978 6.2333 -0.7027 36 1 6.4602 8.0053 -0.6600 37 1 3.9994 8.6512 -2.3418 38 1 3.8860 10.2501 -1.5681 39 1 5.4302 9.3645 -1.5593 40 1 2.8227 12.1494 0.3200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275992437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:59 Heat of formation + Delta-G solvation = -119.747247 kcal Electronic energy + Delta-G solvation = -27154.395372 eV Core-core repulsion = 23061.494070 eV Total energy + Delta-G solvation = -4092.901302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43669 -41.49731 -40.08942 -38.66432 -37.58861 -37.40317 -35.92752 -34.74392 -31.55076 -30.50912 -29.05271 -27.92358 -27.36680 -26.69688 -25.24044 -23.07328 -22.70512 -21.91244 -20.52785 -19.64487 -18.93918 -18.43751 -18.28142 -17.85880 -17.59663 -17.37551 -17.28082 -16.79563 -16.31452 -15.90182 -15.73604 -15.23709 -15.07969 -14.65408 -14.52643 -14.38125 -14.14954 -13.94015 -13.67652 -13.49914 -13.39923 -13.01751 -12.94224 -12.80395 -12.76140 -12.51585 -12.23100 -12.16742 -12.09800 -11.95539 -11.85475 -11.57539 -11.26574 -10.61083 -10.48194 -9.64563 -9.56814 -9.34753 -8.19588 -6.36347 -0.75592 0.08888 0.28687 0.78731 0.83448 1.20254 1.41626 1.43075 1.53113 1.79046 1.82098 2.04139 2.32393 2.45449 3.06947 3.10505 3.70934 3.83282 4.13972 4.30769 4.32044 4.37989 4.50929 4.68999 4.69589 4.73968 4.82984 4.83873 4.95170 5.06662 5.07529 5.16303 5.30435 5.33242 5.34122 5.57163 5.60067 5.88395 6.05184 6.14299 6.44986 6.60296 6.65779 6.84919 7.34352 8.85262 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.002894 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.610267 B = 9674.371552 C =10647.165227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.530 3.470 4 O -0.552 6.552 5 C -0.231 4.231 6 C -0.070 4.070 7 C -0.266 4.266 8 S 0.320 5.680 9 C 0.049 3.951 10 N -0.603 5.603 11 C 0.511 3.489 12 O -0.473 6.473 13 C 0.489 3.511 14 O -0.563 6.563 15 N -0.554 5.554 16 C 0.072 3.928 17 C 0.258 3.742 18 H 0.021 0.979 19 C -0.135 4.135 20 C -0.544 4.544 21 H 0.061 0.939 22 C 0.020 3.980 23 N -0.914 5.914 24 Si 0.966 3.034 25 H -0.282 1.282 26 H -0.263 1.263 27 H -0.278 1.278 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.059 0.941 31 H 0.180 0.820 32 H 0.210 0.790 33 H 0.435 0.565 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -25.235 -2.030 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.377 3.623 4 O -0.446 6.446 5 C -0.250 4.250 6 C -0.096 4.096 7 C -0.401 4.401 8 S 0.582 5.418 9 C -0.170 4.170 10 N -0.252 5.252 11 C 0.293 3.707 12 O -0.348 6.348 13 C 0.271 3.729 14 O -0.443 6.443 15 N -0.284 5.284 16 C -0.069 4.069 17 C 0.157 3.843 18 H 0.039 0.961 19 C -0.193 4.193 20 C -0.582 4.582 21 H 0.079 0.921 22 C -0.180 4.180 23 N -0.552 5.552 24 Si 0.791 3.209 25 H -0.208 1.208 26 H -0.187 1.187 27 H -0.203 1.203 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.078 0.922 31 H 0.197 0.803 32 H 0.227 0.773 33 H 0.280 0.720 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.942 -23.793 -2.023 24.867 hybrid contribution -2.459 0.298 0.683 2.570 sum 4.482 -23.495 -1.339 23.956 Atomic orbital electron populations 1.23600 0.74399 1.05997 1.02454 1.86554 1.24993 1.30751 1.83931 1.20521 0.88370 0.81681 0.71692 1.90789 1.67388 1.36958 1.49420 1.19288 0.90625 0.92510 1.22576 1.21053 0.91109 0.98165 0.99285 1.26326 1.01401 1.01184 1.11219 1.84224 0.92161 0.98588 1.66782 1.22629 1.03295 0.86959 1.04098 1.42948 1.13403 1.01927 1.66907 1.20496 0.86902 0.86010 0.77283 1.90567 1.12838 1.85286 1.46071 1.19800 0.86943 0.85632 0.80545 1.90754 1.15382 1.86667 1.51517 1.48273 1.08905 1.06212 1.65017 1.22345 0.77277 1.04293 1.03009 1.18880 0.93361 0.76767 0.95296 0.96121 1.21924 1.00622 1.01889 0.94915 1.21494 1.28319 0.97791 1.10594 0.92068 1.25690 0.94750 0.98749 0.98849 1.69995 1.32149 1.16443 1.36622 0.85436 0.78943 0.77765 0.78779 1.20798 1.18668 1.20300 0.92159 0.84215 0.92248 0.80291 0.77331 0.72017 0.92268 0.87445 0.90361 0.95584 0.90632 0.92911 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.35 -7.25 10.29 -57.92 -0.60 -7.85 16 3 C 0.53 14.31 7.91 69.97 0.55 14.86 16 4 O -0.55 -18.51 14.24 19.39 0.28 -18.23 16 5 C -0.23 -5.60 6.00 -19.73 -0.12 -5.71 16 6 C -0.07 -1.11 10.13 22.74 0.23 -0.88 16 7 C -0.27 -3.52 11.09 66.66 0.74 -2.78 16 8 S 0.32 6.40 19.95 -56.49 -1.13 5.28 16 9 C 0.05 1.33 6.97 83.43 0.58 1.92 16 10 N -0.60 -19.85 5.31 -310.50 -1.65 -21.50 16 11 C 0.51 17.95 7.73 87.22 0.67 18.62 16 12 O -0.47 -14.96 10.55 -3.35 -0.04 -15.00 16 13 C 0.49 21.34 7.73 87.22 0.67 22.01 16 14 O -0.56 -28.50 15.82 -3.29 -0.05 -28.56 16 15 N -0.55 -24.39 2.75 -828.55 -2.28 -26.67 16 16 C 0.07 2.53 8.75 127.77 1.12 3.65 16 17 C 0.26 13.36 2.62 44.24 0.12 13.48 16 18 H 0.02 1.26 6.91 -2.38 -0.02 1.25 16 19 C -0.14 -6.39 8.96 71.98 0.64 -5.75 16 20 C -0.54 -29.49 8.37 25.60 0.21 -29.28 16 21 H 0.06 3.26 7.65 -2.91 -0.02 3.23 16 22 C 0.02 1.08 5.30 84.65 0.45 1.53 16 23 N -0.91 -51.77 11.32 21.44 0.24 -51.53 16 24 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.44 15.78 5.65 -92.71 -0.52 15.26 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 3.31 5.36 -2.48 -0.01 3.30 16 36 H 0.08 2.66 6.44 -2.39 -0.02 2.65 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 3.95 6.07 -2.38 -0.01 3.93 16 39 H 0.05 2.26 6.67 -2.39 -0.02 2.24 16 40 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -69.37 353.11 4.47 -64.90 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.58 Total: 21.05 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: 7.08 Total: 33.29 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.69 Total: -99.70 kcal Atomic # 8 Polarization: -69.23 SS G_CDS: -0.41 Total: -69.63 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.13 Total: 5.28 kcal Total: -69.37 4.47 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275992437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.847 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds