Wall clock time and date at job start Sat Apr 11 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34880 * 117.00288 * 2 1 4 4 O 1.21630 * 119.99572 * 359.97438 * 3 2 1 5 5 C 1.46470 * 119.99990 * 179.97438 * 3 2 1 6 6 C 1.44620 * 123.61183 * 0.18847 * 5 3 2 7 7 C 1.32589 * 113.16987 * 180.26081 * 6 5 3 8 8 S 1.75455 * 110.83508 * 359.76187 * 7 6 5 9 9 C 1.37270 * 123.60724 * 180.02562 * 5 3 2 10 10 N 1.38349 * 124.66608 * 0.02562 * 9 5 3 11 11 C 1.34770 * 120.00201 * 179.72348 * 10 9 5 12 12 O 1.21387 * 120.00004 * 0.02562 * 11 10 9 13 13 C 1.49301 * 120.00146 * 180.27723 * 11 10 9 14 14 O 1.21365 * 119.99908 * 353.89228 * 13 11 10 15 15 N 1.34777 * 120.00144 * 173.89539 * 13 11 10 16 16 C 1.46500 * 119.99884 * 3.62651 * 15 13 11 17 17 C 1.46494 * 120.00041 * 183.63397 * 15 13 11 18 18 H 1.09006 * 109.47159 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.47485 * 119.99505 * 17 15 13 20 20 C 1.50697 * 109.47231 * 239.99671 * 17 15 13 21 21 H 1.08003 * 120.00153 * 359.97438 * 20 17 15 22 22 C 1.37882 * 120.00550 * 179.97438 * 20 17 15 23 23 N 1.31507 * 120.00401 * 180.02562 * 22 20 17 24 24 Si 1.86800 * 119.99577 * 0.02562 * 22 20 17 25 25 H 1.48491 * 109.47269 * 89.99744 * 24 22 20 26 26 H 1.48498 * 109.46933 * 210.00016 * 24 22 20 27 27 H 1.48503 * 109.47233 * 329.99518 * 24 22 20 28 28 H 1.08991 * 109.47349 * 300.00456 * 1 2 3 29 29 H 1.09002 * 109.46595 * 60.00750 * 1 2 3 30 30 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.07998 * 123.41100 * 0.02562 * 6 5 3 32 32 H 1.07994 * 124.57909 * 179.78346 * 7 6 5 33 33 H 0.96998 * 119.99703 * 359.72977 * 10 9 5 34 34 H 1.08999 * 109.46937 * 83.99925 * 16 15 13 35 35 H 1.09001 * 109.46912 * 203.98928 * 16 15 13 36 36 H 1.08994 * 109.47483 * 323.99463 * 16 15 13 37 37 H 1.09004 * 109.47019 * 179.97438 * 19 17 15 38 38 H 1.08997 * 109.47192 * 299.99949 * 19 17 15 39 39 H 1.09006 * 109.46624 * 60.00037 * 19 17 15 40 40 H 0.96999 * 120.00216 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4019 2.2218 -0.0005 5 6 3.5271 1.2783 0.0006 6 6 4.3895 0.1174 -0.0028 7 6 5.6791 0.4256 0.0040 8 16 5.9050 2.1655 0.0081 9 6 4.2261 2.4598 0.0011 10 7 3.6474 3.7164 0.0017 11 6 4.4257 4.8167 0.0079 12 8 5.6344 4.7051 0.0124 13 6 3.8012 6.1728 0.0148 14 8 2.5982 6.2874 -0.0970 15 7 4.5735 7.2697 0.1450 16 6 6.0314 7.1367 0.1999 17 6 3.9550 8.5948 0.2318 18 1 2.8712 8.4945 0.1734 19 6 4.3360 9.2495 1.5612 20 6 4.4418 9.4521 -0.9079 21 1 5.1423 9.0501 -1.6251 22 6 3.9931 10.7496 -1.0354 23 7 4.4176 11.4975 -2.0303 24 14 2.7822 11.4451 0.2053 25 1 3.5273 12.0756 1.3244 26 1 1.9264 12.4630 -0.4553 27 1 1.9301 10.3494 0.7332 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0205 -0.8975 -0.0064 32 1 6.4819 -0.2968 0.0063 33 1 2.6816 3.8056 -0.0022 34 1 6.4299 7.0853 -0.8133 35 1 6.4558 7.9992 0.7138 36 1 6.2933 6.2269 0.7400 37 1 3.8762 10.2357 1.6255 38 1 3.9839 8.6295 2.3856 39 1 5.4199 9.3498 1.6192 40 1 4.1021 12.4104 -2.1198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275992440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:03 Heat of formation + Delta-G solvation = -90.485804 kcal Electronic energy + Delta-G solvation = -27219.173143 eV Core-core repulsion = 23127.540713 eV Total energy + Delta-G solvation = -4091.632430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20286 -40.45818 -38.71963 -37.67941 -36.43522 -36.10962 -34.74410 -32.77382 -30.56336 -29.62632 -28.22458 -26.54312 -25.74132 -25.18643 -24.09749 -22.01459 -21.60690 -20.67861 -19.11095 -18.61349 -17.63568 -17.27821 -16.94648 -16.59377 -16.36691 -16.23656 -16.07076 -15.52366 -14.97550 -14.78151 -14.51147 -14.22851 -13.66701 -13.58016 -13.43634 -13.07728 -12.90420 -12.64692 -12.55615 -12.33386 -12.28046 -12.19918 -11.88926 -11.35058 -11.29604 -11.11211 -11.01581 -10.87176 -10.79340 -10.55660 -10.23266 -9.71906 -9.47163 -9.13107 -8.72972 -8.72227 -8.46003 -7.99788 -6.22234 -4.24780 0.29120 0.96536 1.55296 1.64234 1.70987 2.31198 2.63310 2.87487 3.17646 3.31864 3.32592 3.34655 3.71165 4.27443 4.46152 4.53755 4.73490 4.88507 4.95630 4.97278 5.09764 5.29874 5.39762 5.61392 5.79096 5.85166 5.94086 6.08208 6.10295 6.13179 6.19186 6.30285 6.43725 6.67029 6.70479 6.90447 7.03015 7.39335 7.46459 7.57656 7.84917 8.22459 8.41438 8.78901 9.36337 10.90164 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003027 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.992006 B = 9247.202039 C =10432.067796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.535 3.465 4 O -0.518 6.518 5 C -0.231 4.231 6 C -0.063 4.063 7 C -0.296 4.296 8 S 0.316 5.684 9 C 0.090 3.910 10 N -0.602 5.602 11 C 0.501 3.499 12 O -0.478 6.478 13 C 0.501 3.499 14 O -0.523 6.523 15 N -0.542 5.542 16 C 0.070 3.930 17 C 0.227 3.773 18 H 0.067 0.933 19 C -0.163 4.163 20 C -0.532 4.532 21 H 0.082 0.918 22 C 0.079 3.921 23 N -0.890 5.890 24 Si 0.882 3.118 25 H -0.275 1.275 26 H -0.292 1.292 27 H -0.263 1.263 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.443 0.557 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -24.033 6.536 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.381 3.619 4 O -0.409 6.409 5 C -0.249 4.249 6 C -0.091 4.091 7 C -0.431 4.431 8 S 0.577 5.423 9 C -0.132 4.132 10 N -0.252 5.252 11 C 0.284 3.716 12 O -0.353 6.353 13 C 0.281 3.719 14 O -0.401 6.401 15 N -0.273 5.273 16 C -0.073 4.073 17 C 0.126 3.874 18 H 0.085 0.915 19 C -0.221 4.221 20 C -0.570 4.570 21 H 0.100 0.900 22 C -0.125 4.125 23 N -0.527 5.527 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.188 1.188 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.171 0.829 32 H 0.188 0.812 33 H 0.289 0.711 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.268 -22.531 6.392 23.530 hybrid contribution -2.585 -0.338 0.461 2.647 sum -0.317 -22.869 6.853 23.876 Atomic orbital electron populations 1.23286 0.75969 1.03634 1.02865 1.86563 1.23474 1.32217 1.84588 1.20195 0.87796 0.81509 0.72378 1.90792 1.66545 1.35730 1.47850 1.18923 0.90652 0.91632 1.23714 1.20823 0.91291 0.98086 0.98921 1.25957 1.00755 1.02425 1.14010 1.84345 0.93883 0.96378 1.67724 1.22280 1.01771 0.87762 1.01353 1.43133 1.13957 1.01234 1.66885 1.21350 0.86907 0.87003 0.76321 1.90592 1.13675 1.85332 1.45654 1.19181 0.87208 0.84215 0.81328 1.90785 1.13669 1.85745 1.49859 1.47888 1.07695 1.06324 1.65357 1.22235 0.78977 1.03152 1.02917 1.19550 0.95894 0.77615 0.94368 0.91544 1.22487 1.02031 0.99929 0.97645 1.21078 1.28970 0.96724 1.10271 0.90030 1.24843 0.95683 0.96534 0.95448 1.69857 1.43691 1.08810 1.30348 0.86932 0.81636 0.79282 0.80989 1.20207 1.21923 1.18755 0.91747 0.91701 0.88039 0.82941 0.81200 0.71071 0.92137 0.90645 0.89303 0.92656 0.94537 0.92058 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -3.81 10.29 -40.99 -0.42 -4.23 16 3 C 0.54 7.09 7.91 34.05 0.27 7.36 16 4 O -0.52 -8.14 14.24 -19.37 -0.28 -8.42 16 5 C -0.23 -2.86 6.00 -104.42 -0.63 -3.48 16 6 C -0.06 -0.60 10.13 -38.97 -0.39 -0.99 16 7 C -0.30 -2.49 11.09 28.83 0.32 -2.17 16 8 S 0.32 3.41 19.95 -107.50 -2.14 1.26 16 9 C 0.09 1.20 6.97 -14.96 -0.10 1.10 16 10 N -0.60 -9.33 5.31 -12.08 -0.06 -9.39 16 11 C 0.50 8.35 7.73 -11.66 -0.09 8.26 16 12 O -0.48 -7.50 10.55 5.46 0.06 -7.45 16 13 C 0.50 10.06 7.73 -11.66 -0.09 9.97 16 14 O -0.52 -11.86 15.82 5.48 0.09 -11.77 16 15 N -0.54 -11.19 2.75 -175.83 -0.48 -11.68 16 16 C 0.07 1.21 8.76 59.85 0.52 1.73 16 17 C 0.23 5.34 2.22 -69.09 -0.15 5.19 16 18 H 0.07 1.71 5.96 -51.93 -0.31 1.40 16 19 C -0.16 -3.38 8.66 37.16 0.32 -3.06 16 20 C -0.53 -14.48 8.95 -34.44 -0.31 -14.79 16 21 H 0.08 2.40 7.89 -52.48 -0.41 1.99 16 22 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 23 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 24 Si 0.88 21.25 24.37 -169.99 -4.14 17.11 16 25 H -0.28 -6.31 6.87 56.52 0.39 -5.93 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.44 7.32 5.65 -40.82 -0.23 7.08 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.26 6.44 -51.93 -0.33 0.93 16 36 H 0.09 1.36 5.35 -51.94 -0.28 1.08 16 37 H 0.06 1.20 3.27 -51.93 -0.17 1.03 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.18 6.67 -51.93 -0.35 0.83 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -32.08 346.28 -4.98 -37.06 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.22 Total: 5.35 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 0.64 Total: 12.55 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.23 Total: -46.69 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.55 Total: -31.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.14 Total: 17.11 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.14 Total: 1.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.08 -4.98 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275992440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.421 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds