Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34880 * 117.00288 * 2 1 4 4 O 1.21630 * 119.99572 * 359.97438 * 3 2 1 5 5 C 1.46470 * 119.99990 * 179.97438 * 3 2 1 6 6 C 1.44620 * 123.61183 * 0.18847 * 5 3 2 7 7 C 1.32589 * 113.16987 * 180.26081 * 6 5 3 8 8 S 1.75455 * 110.83508 * 359.76187 * 7 6 5 9 9 C 1.37270 * 123.60724 * 180.02562 * 5 3 2 10 10 N 1.38349 * 124.66608 * 0.02562 * 9 5 3 11 11 C 1.34770 * 120.00201 * 179.72348 * 10 9 5 12 12 O 1.21387 * 120.00004 * 0.02562 * 11 10 9 13 13 C 1.49301 * 120.00146 * 180.27723 * 11 10 9 14 14 O 1.21365 * 119.99908 * 353.89228 * 13 11 10 15 15 N 1.34777 * 120.00144 * 173.89539 * 13 11 10 16 16 C 1.46500 * 119.99884 * 3.62651 * 15 13 11 17 17 C 1.46494 * 120.00041 * 183.63397 * 15 13 11 18 18 H 1.09006 * 109.47159 * 359.97438 * 17 15 13 19 19 C 1.53002 * 109.47485 * 119.99505 * 17 15 13 20 20 C 1.50697 * 109.47231 * 239.99671 * 17 15 13 21 21 H 1.08003 * 120.00153 * 359.97438 * 20 17 15 22 22 C 1.37882 * 120.00550 * 179.97438 * 20 17 15 23 23 N 1.31507 * 120.00401 * 180.02562 * 22 20 17 24 24 Si 1.86800 * 119.99577 * 0.02562 * 22 20 17 25 25 H 1.48491 * 109.47269 * 89.99744 * 24 22 20 26 26 H 1.48498 * 109.46933 * 210.00016 * 24 22 20 27 27 H 1.48503 * 109.47233 * 329.99518 * 24 22 20 28 28 H 1.08991 * 109.47349 * 300.00456 * 1 2 3 29 29 H 1.09002 * 109.46595 * 60.00750 * 1 2 3 30 30 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.07998 * 123.41100 * 0.02562 * 6 5 3 32 32 H 1.07994 * 124.57909 * 179.78346 * 7 6 5 33 33 H 0.96998 * 119.99703 * 359.72977 * 10 9 5 34 34 H 1.08999 * 109.46937 * 83.99925 * 16 15 13 35 35 H 1.09001 * 109.46912 * 203.98928 * 16 15 13 36 36 H 1.08994 * 109.47483 * 323.99463 * 16 15 13 37 37 H 1.09004 * 109.47019 * 179.97438 * 19 17 15 38 38 H 1.08997 * 109.47192 * 299.99949 * 19 17 15 39 39 H 1.09006 * 109.46624 * 60.00037 * 19 17 15 40 40 H 0.96999 * 120.00216 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4019 2.2218 -0.0005 5 6 3.5271 1.2783 0.0006 6 6 4.3895 0.1174 -0.0028 7 6 5.6791 0.4256 0.0040 8 16 5.9050 2.1655 0.0081 9 6 4.2261 2.4598 0.0011 10 7 3.6474 3.7164 0.0017 11 6 4.4257 4.8167 0.0079 12 8 5.6344 4.7051 0.0124 13 6 3.8012 6.1728 0.0148 14 8 2.5982 6.2874 -0.0970 15 7 4.5735 7.2697 0.1450 16 6 6.0314 7.1367 0.1999 17 6 3.9550 8.5948 0.2318 18 1 2.8712 8.4945 0.1734 19 6 4.3360 9.2495 1.5612 20 6 4.4418 9.4521 -0.9079 21 1 5.1423 9.0501 -1.6251 22 6 3.9931 10.7496 -1.0354 23 7 4.4176 11.4975 -2.0303 24 14 2.7822 11.4451 0.2053 25 1 3.5273 12.0756 1.3244 26 1 1.9264 12.4630 -0.4553 27 1 1.9301 10.3494 0.7332 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0205 -0.8975 -0.0064 32 1 6.4819 -0.2968 0.0063 33 1 2.6816 3.8056 -0.0022 34 1 6.4299 7.0853 -0.8133 35 1 6.4558 7.9992 0.7138 36 1 6.2933 6.2269 0.7400 37 1 3.8762 10.2357 1.6255 38 1 3.9839 8.6295 2.3856 39 1 5.4199 9.3498 1.6192 40 1 4.1021 12.4104 -2.1198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275992440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = -113.209635 kcal Electronic energy + Delta-G solvation = -27220.158522 eV Core-core repulsion = 23127.540713 eV Total energy + Delta-G solvation = -4092.617809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.47866 -41.51053 -40.17632 -38.67812 -37.71067 -37.40264 -35.94828 -34.73740 -32.40093 -30.53751 -29.07050 -27.99264 -27.27093 -26.76351 -25.31532 -23.13837 -22.71607 -21.91840 -20.52133 -19.65399 -19.11735 -18.71428 -18.28766 -17.91072 -17.64766 -17.43770 -17.36121 -16.87361 -16.40087 -15.94072 -15.68910 -15.25021 -15.20272 -14.89202 -14.61907 -14.38736 -14.18018 -14.07549 -13.94671 -13.76442 -13.60676 -13.40076 -13.12443 -12.94156 -12.73298 -12.51285 -12.14717 -12.10240 -11.98558 -11.85296 -11.64105 -11.53456 -11.43361 -10.83870 -10.55976 -9.72809 -9.57268 -9.35993 -8.38225 -6.45249 -0.76857 0.08450 0.25162 0.75472 0.83161 1.17311 1.26408 1.36054 1.44101 1.77893 1.79011 2.02667 2.25398 2.30181 2.95300 3.02605 3.70593 3.82894 4.13014 4.27525 4.30909 4.32306 4.37281 4.45380 4.50942 4.60862 4.69807 4.75498 4.82681 4.93132 5.02814 5.07056 5.14573 5.19320 5.30155 5.32942 5.48020 5.56718 5.98275 6.19428 6.33674 6.57514 6.60143 6.72359 7.20393 8.77718 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003027 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.992006 B = 9247.202039 C =10432.067796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.531 3.469 4 O -0.551 6.551 5 C -0.229 4.229 6 C -0.070 4.070 7 C -0.266 4.266 8 S 0.319 5.681 9 C 0.049 3.951 10 N -0.602 5.602 11 C 0.511 3.489 12 O -0.472 6.472 13 C 0.495 3.505 14 O -0.557 6.557 15 N -0.551 5.551 16 C 0.072 3.928 17 C 0.228 3.772 18 H 0.043 0.957 19 C -0.157 4.157 20 C -0.534 4.534 21 H 0.045 0.955 22 C 0.026 3.974 23 N -0.936 5.936 24 Si 0.941 3.059 25 H -0.250 1.250 26 H -0.295 1.295 27 H -0.257 1.257 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.180 0.820 32 H 0.209 0.791 33 H 0.436 0.564 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -26.779 8.325 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.378 3.622 4 O -0.445 6.445 5 C -0.249 4.249 6 C -0.096 4.096 7 C -0.401 4.401 8 S 0.582 5.418 9 C -0.170 4.170 10 N -0.251 5.251 11 C 0.293 3.707 12 O -0.347 6.347 13 C 0.276 3.724 14 O -0.436 6.436 15 N -0.281 5.281 16 C -0.069 4.069 17 C 0.126 3.874 18 H 0.061 0.939 19 C -0.214 4.214 20 C -0.572 4.572 21 H 0.063 0.937 22 C -0.173 4.173 23 N -0.575 5.575 24 Si 0.767 3.233 25 H -0.175 1.175 26 H -0.222 1.222 27 H -0.182 1.182 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.197 0.803 32 H 0.226 0.774 33 H 0.281 0.719 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.033 -25.344 8.197 26.809 hybrid contribution -2.797 0.269 -0.190 2.817 sum 0.235 -25.075 8.008 26.324 Atomic orbital electron populations 1.23596 0.74383 1.05983 1.02477 1.86557 1.25006 1.30784 1.83916 1.20502 0.88335 0.81688 0.71693 1.90779 1.67355 1.36926 1.49416 1.19281 0.90646 0.92471 1.22475 1.21059 0.91105 0.98203 0.99266 1.26322 1.01418 1.01183 1.11213 1.84268 0.92221 0.98601 1.66743 1.22605 1.03225 0.86959 1.04184 1.42910 1.13402 1.01864 1.66880 1.20410 0.86894 0.85981 0.77419 1.90583 1.12915 1.85254 1.45980 1.19749 0.86878 0.85566 0.80173 1.90753 1.15206 1.86617 1.51072 1.47913 1.08978 1.05650 1.65518 1.22372 0.77001 1.04662 1.02841 1.19278 0.94675 0.78789 0.94689 0.93910 1.22356 1.03051 0.99606 0.96413 1.21261 1.27874 0.97279 1.10776 0.93701 1.25649 0.97449 0.96946 0.97297 1.69991 1.45600 1.09412 1.32522 0.85979 0.79474 0.78563 0.79257 1.17477 1.22242 1.18198 0.92071 0.92254 0.84292 0.80310 0.77399 0.71921 0.93066 0.90002 0.86857 0.93234 0.91927 0.90630 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.35 -6.96 10.29 -57.94 -0.60 -7.56 16 3 C 0.53 13.75 7.91 69.97 0.55 14.30 16 4 O -0.55 -17.70 14.24 19.41 0.28 -17.42 16 5 C -0.23 -5.35 6.00 -19.73 -0.12 -5.47 16 6 C -0.07 -1.08 10.13 22.74 0.23 -0.85 16 7 C -0.27 -3.41 11.09 66.66 0.74 -2.67 16 8 S 0.32 6.20 19.95 -56.49 -1.13 5.07 16 9 C 0.05 1.28 6.97 83.44 0.58 1.87 16 10 N -0.60 -18.86 5.31 -310.49 -1.65 -20.51 16 11 C 0.51 17.13 7.73 87.22 0.67 17.80 16 12 O -0.47 -14.49 10.55 -3.36 -0.04 -14.53 16 13 C 0.49 20.30 7.73 87.22 0.67 20.98 16 14 O -0.56 -26.17 15.82 -3.29 -0.05 -26.22 16 15 N -0.55 -22.96 2.75 -828.57 -2.28 -25.24 16 16 C 0.07 2.48 8.76 127.77 1.12 3.60 16 17 C 0.23 10.82 2.22 44.25 0.10 10.92 16 18 H 0.04 2.24 5.96 -2.38 -0.01 2.23 16 19 C -0.16 -6.24 8.66 71.98 0.62 -5.61 16 20 C -0.53 -29.87 8.95 25.60 0.23 -29.64 16 21 H 0.04 2.77 7.89 -2.91 -0.02 2.75 16 22 C 0.03 1.48 5.45 84.66 0.46 1.94 16 23 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 24 Si 0.94 43.89 24.37 68.60 1.67 45.56 16 25 H -0.25 -10.57 6.87 99.48 0.68 -9.89 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.26 -11.71 6.53 99.48 0.65 -11.06 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.44 14.96 5.65 -92.71 -0.52 14.43 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.67 6.44 -2.39 -0.02 2.65 16 36 H 0.11 3.32 5.35 -2.50 -0.01 3.31 16 37 H 0.05 2.03 3.27 -2.38 -0.01 2.02 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 2.76 6.67 -2.38 -0.02 2.75 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.62 346.28 4.08 -68.54 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.51 Total: 20.30 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 7.06 Total: 28.79 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.63 Total: -102.55 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -0.41 Total: -65.72 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.67 Total: 45.56 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.13 Total: 5.07 kcal Total: -72.62 4.08 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275992440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.670 kcal (2) G-P(sol) polarization free energy of solvation -72.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds