Wall clock time and date at job start Sat Apr 11 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46585 * 162.53937 * 3 2 1 5 5 C 1.36935 * 119.99935 * 263.95211 * 4 3 2 6 6 H 1.07998 * 120.00265 * 201.04325 * 5 4 3 7 7 C 1.38817 * 120.00180 * 21.03510 * 5 4 3 8 8 N 1.31620 * 119.99588 * 15.18453 * 7 5 4 9 9 Si 1.86806 * 120.00171 * 195.18032 * 7 5 4 10 10 H 1.48497 * 109.46889 * 60.00116 * 9 7 5 11 11 H 1.48495 * 109.46530 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47090 * 300.00380 * 9 7 5 13 13 C 1.46500 * 120.00174 * 83.95598 * 4 3 2 14 14 C 1.50701 * 109.46819 * 269.99553 * 13 4 3 15 15 O 1.21298 * 120.00000 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99986 * 179.97438 * 14 13 4 17 17 C 1.40155 * 120.00163 * 184.47842 * 16 14 13 18 18 C 1.38862 * 119.98662 * 325.95275 * 17 16 14 19 19 C 1.38041 * 120.00963 * 180.02562 * 18 17 16 20 20 C 1.38950 * 119.98651 * 359.97438 * 19 18 17 21 21 S 1.76206 * 120.00739 * 179.97438 * 20 19 18 22 22 C 1.81400 * 102.99850 * 179.97438 * 21 20 19 23 23 F 1.39906 * 109.46931 * 299.99552 * 22 21 20 24 24 F 1.39894 * 109.47329 * 59.99693 * 22 21 20 25 25 C 1.38952 * 119.98233 * 0.24510 * 20 19 18 26 26 C 1.38039 * 119.98629 * 359.51516 * 25 20 19 27 27 H 4.40643 * 5.51456 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47200 * 42.54507 * 3 2 1 29 29 H 1.08991 * 109.47488 * 282.53863 * 3 2 1 30 30 H 0.97002 * 119.99940 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47488 * 149.99734 * 13 4 3 32 32 H 1.08997 * 109.46888 * 29.99316 * 13 4 3 33 33 H 0.96999 * 120.00183 * 4.47801 * 16 14 13 34 34 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.00859 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.46838 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00250 * 179.73117 * 25 20 19 38 38 H 1.08000 * 119.99105 * 180.20480 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3185 -0.4145 5 6 3.4795 1.5409 -1.7206 6 1 4.1390 2.3580 -1.9730 7 6 2.9825 0.7159 -2.7204 8 7 1.9630 -0.0785 -2.4717 9 14 3.7607 0.7333 -4.4185 10 1 5.1904 0.3464 -4.3118 11 1 3.0510 -0.2300 -5.2980 12 1 3.6590 2.0977 -4.9957 13 6 3.2513 2.3984 0.5685 14 6 1.9593 3.1724 0.6214 15 8 1.0314 2.8530 -0.0915 16 7 1.8346 4.2188 1.4615 17 6 0.6045 4.8800 1.5796 18 6 -0.2254 5.0048 0.4732 19 6 -1.4369 5.6564 0.5889 20 6 -1.8260 6.1869 1.8127 21 16 -3.3720 7.0194 1.9608 22 6 -3.4063 7.5086 3.7072 23 9 -3.3309 6.3672 4.5128 24 9 -2.3176 8.3440 3.9790 25 6 -0.9932 6.0658 2.9184 26 6 0.2158 5.4098 2.8029 27 1 -1.0503 -0.0004 0.0003 28 1 3.0097 -0.7563 -0.6948 29 1 3.0095 -0.2223 1.0030 30 1 1.6155 -0.6547 -3.1704 31 1 4.0631 3.0659 0.2795 32 1 3.4614 1.9746 1.5504 33 1 2.5962 4.5144 1.9845 34 1 0.0770 4.5920 -0.4779 35 1 -2.0821 5.7537 -0.2717 36 1 -4.3339 8.0412 3.9171 37 1 -1.2934 6.4819 3.8687 38 1 0.8617 5.3127 3.6631 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281325235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:21 Heat of formation + Delta-G solvation = 3.528018 kcal Electronic energy + Delta-G solvation = -26390.019781 eV Core-core repulsion = 22191.376580 eV Total energy + Delta-G solvation = -4198.643200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.080 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.63764 -47.62875 -40.02067 -38.11599 -35.73697 -34.17744 -31.48806 -31.29590 -30.97701 -29.72720 -27.36882 -27.01668 -25.89577 -23.19130 -22.85509 -21.60930 -19.82122 -18.89476 -18.29428 -17.82693 -17.57109 -17.37088 -16.82563 -16.45193 -16.05691 -15.03040 -14.99522 -14.55313 -14.52537 -14.15290 -13.95843 -13.95461 -13.68129 -13.41994 -13.34839 -13.26015 -12.91806 -12.76390 -12.39087 -11.58168 -11.44423 -11.37897 -11.31504 -10.97569 -10.76167 -10.67436 -10.46393 -10.30814 -10.07530 -9.21260 -9.01566 -8.88375 -8.81146 -8.59483 -8.28593 -7.46538 -7.02163 -5.77229 -3.27624 0.49608 1.17864 1.41947 1.68161 3.31795 3.33857 3.34946 3.41371 3.43091 3.50192 3.84923 3.94379 4.03027 4.30558 4.52113 4.65253 4.82015 4.88261 5.30078 5.35959 5.45643 5.54794 5.58115 5.74980 5.95500 6.01229 6.04821 6.06293 6.16637 6.31763 6.49644 6.65953 6.72011 7.18345 7.24287 7.56003 7.69017 7.85911 8.25449 8.89909 9.07281 9.43605 9.69910 10.14510 11.23730 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002599 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.788549 B =10771.033460 C =10900.142612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.094 4.094 3 C 0.271 3.729 4 N -0.556 5.556 5 C -0.273 4.273 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.878 5.878 9 Si 0.907 3.093 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.130 3.870 14 C 0.461 3.539 15 O -0.470 6.470 16 N -0.692 5.692 17 C 0.175 3.825 18 C -0.109 4.109 19 C -0.067 4.067 20 C -0.125 4.125 21 S -0.106 6.106 22 C 0.272 3.728 23 F -0.181 7.181 24 F -0.182 7.182 25 C -0.101 4.101 26 C -0.141 4.141 27 H 0.183 0.817 28 H 0.099 0.901 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 14.042 13.937 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.097 4.097 3 C 0.147 3.853 4 N -0.273 5.273 5 C -0.402 4.402 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.519 5.519 9 Si 0.736 3.264 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.210 1.210 13 C -0.002 4.002 14 C 0.246 3.754 15 O -0.338 6.338 16 N -0.340 5.340 17 C 0.077 3.923 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.238 4.238 21 S 0.130 5.870 22 C 0.109 3.891 23 F -0.163 7.163 24 F -0.164 7.164 25 C -0.124 4.124 26 C -0.164 4.164 27 H 0.200 0.800 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.407 13.771 12.471 20.001 hybrid contribution 1.033 0.101 0.218 1.060 sum -6.375 13.872 12.689 19.851 Atomic orbital electron populations 1.23954 0.95126 1.03799 1.07848 1.23833 0.94919 0.96953 0.93973 1.17858 0.83279 0.88178 0.96026 1.44153 1.72681 1.04479 1.05975 1.19117 1.23114 1.15642 0.82299 0.90789 1.25086 0.95882 0.99994 0.97873 1.70078 1.22197 1.26907 1.32695 0.86325 0.78684 0.77448 0.83933 1.20841 1.21629 1.20980 1.21156 0.92399 0.91393 0.95279 1.24024 0.93728 0.79017 0.78626 1.90755 1.40062 1.64973 1.37981 1.44534 1.10446 1.32847 1.46210 1.18063 0.88216 0.93140 0.92883 1.21400 0.93936 0.98130 0.99632 1.20634 0.96479 0.96676 0.95268 1.21196 0.97225 1.07329 0.98071 1.86179 1.23717 1.69621 1.07478 1.24281 0.92035 0.80901 0.91886 1.93123 1.96911 1.51162 1.75086 1.93107 1.57403 1.71374 1.94508 1.21027 0.94377 0.99986 0.97032 1.20762 0.97117 1.02446 0.96037 0.79965 0.88279 0.94850 0.93383 0.90105 0.90943 0.76178 0.83089 0.85334 0.82926 0.85755 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.18 18.77 29.55 0.55 -6.62 16 2 C -0.09 -2.38 9.89 -37.12 -0.37 -2.75 16 3 C 0.27 6.38 5.45 -6.83 -0.04 6.34 16 4 N -0.56 -13.09 2.09 -177.96 -0.37 -13.46 16 5 C -0.27 -7.12 9.67 -15.06 -0.15 -7.26 16 6 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 7 C 0.01 0.34 5.00 -17.43 -0.09 0.25 16 8 N -0.88 -25.04 9.24 55.49 0.51 -24.53 16 9 Si 0.91 21.37 29.58 -169.99 -5.03 16.34 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.39 6.18 -5.19 -0.03 2.36 16 14 C 0.46 8.93 7.65 -10.99 -0.08 8.85 16 15 O -0.47 -11.41 11.79 5.54 0.07 -11.35 16 16 N -0.69 -10.30 5.35 -9.81 -0.05 -10.35 16 17 C 0.17 2.73 6.32 -83.59 -0.53 2.21 16 18 C -0.11 -1.87 8.70 -39.42 -0.34 -2.21 16 19 C -0.07 -1.02 9.78 -39.39 -0.39 -1.40 16 20 C -0.13 -1.73 6.10 -39.05 -0.24 -1.97 16 21 S -0.11 -1.15 22.16 -107.50 -2.38 -3.53 16 22 C 0.27 2.26 5.37 101.05 0.54 2.81 16 23 F -0.18 -1.86 15.66 2.25 0.04 -1.82 16 24 F -0.18 -1.77 15.62 2.25 0.04 -1.73 16 25 C -0.10 -1.35 8.68 -39.39 -0.34 -1.69 16 26 C -0.14 -1.89 9.96 -39.42 -0.39 -2.28 16 27 H 0.18 4.05 7.80 -54.08 -0.42 3.63 16 28 H 0.10 2.52 6.49 -51.93 -0.34 2.18 16 29 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 32 H 0.07 1.11 7.95 -51.93 -0.41 0.69 16 33 H 0.40 4.35 8.82 -40.82 -0.36 3.99 16 34 H 0.15 3.01 6.14 -52.48 -0.32 2.69 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 1.50 4.54 -52.49 -0.24 1.27 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -33.57 348.50 -7.56 -41.12 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.74 Total: 7.43 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.88 Total: -3.38 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.09 Total: -48.34 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.07 Total: -3.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.38 Total: -3.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.57 -7.56 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281325235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.652 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds