Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46585 * 162.53937 * 3 2 1 5 5 C 1.36935 * 119.99935 * 263.95211 * 4 3 2 6 6 H 1.07998 * 120.00265 * 201.04325 * 5 4 3 7 7 C 1.38817 * 120.00180 * 21.03510 * 5 4 3 8 8 N 1.31620 * 119.99588 * 15.18453 * 7 5 4 9 9 Si 1.86806 * 120.00171 * 195.18032 * 7 5 4 10 10 H 1.48497 * 109.46889 * 60.00116 * 9 7 5 11 11 H 1.48495 * 109.46530 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47090 * 300.00380 * 9 7 5 13 13 C 1.46500 * 120.00174 * 83.95598 * 4 3 2 14 14 C 1.50701 * 109.46819 * 269.99553 * 13 4 3 15 15 O 1.21298 * 120.00000 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99986 * 179.97438 * 14 13 4 17 17 C 1.40155 * 120.00163 * 184.47842 * 16 14 13 18 18 C 1.38862 * 119.98662 * 325.95275 * 17 16 14 19 19 C 1.38041 * 120.00963 * 180.02562 * 18 17 16 20 20 C 1.38950 * 119.98651 * 359.97438 * 19 18 17 21 21 S 1.76206 * 120.00739 * 179.97438 * 20 19 18 22 22 C 1.81400 * 102.99850 * 179.97438 * 21 20 19 23 23 F 1.39906 * 109.46931 * 299.99552 * 22 21 20 24 24 F 1.39894 * 109.47329 * 59.99693 * 22 21 20 25 25 C 1.38952 * 119.98233 * 0.24510 * 20 19 18 26 26 C 1.38039 * 119.98629 * 359.51516 * 25 20 19 27 27 H 4.40643 * 5.51456 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47200 * 42.54507 * 3 2 1 29 29 H 1.08991 * 109.47488 * 282.53863 * 3 2 1 30 30 H 0.97002 * 119.99940 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47488 * 149.99734 * 13 4 3 32 32 H 1.08997 * 109.46888 * 29.99316 * 13 4 3 33 33 H 0.96999 * 120.00183 * 4.47801 * 16 14 13 34 34 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.00859 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.46838 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00250 * 179.73117 * 25 20 19 38 38 H 1.08000 * 119.99105 * 180.20480 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3185 -0.4145 5 6 3.4795 1.5409 -1.7206 6 1 4.1390 2.3580 -1.9730 7 6 2.9825 0.7159 -2.7204 8 7 1.9630 -0.0785 -2.4717 9 14 3.7607 0.7333 -4.4185 10 1 5.1904 0.3464 -4.3118 11 1 3.0510 -0.2300 -5.2980 12 1 3.6590 2.0977 -4.9957 13 6 3.2513 2.3984 0.5685 14 6 1.9593 3.1724 0.6214 15 8 1.0314 2.8530 -0.0915 16 7 1.8346 4.2188 1.4615 17 6 0.6045 4.8800 1.5796 18 6 -0.2254 5.0048 0.4732 19 6 -1.4369 5.6564 0.5889 20 6 -1.8260 6.1869 1.8127 21 16 -3.3720 7.0194 1.9608 22 6 -3.4063 7.5086 3.7072 23 9 -3.3309 6.3672 4.5128 24 9 -2.3176 8.3440 3.9790 25 6 -0.9932 6.0658 2.9184 26 6 0.2158 5.4098 2.8029 27 1 -1.0503 -0.0004 0.0003 28 1 3.0097 -0.7563 -0.6948 29 1 3.0095 -0.2223 1.0030 30 1 1.6155 -0.6547 -3.1704 31 1 4.0631 3.0659 0.2795 32 1 3.4614 1.9746 1.5504 33 1 2.5962 4.5144 1.9845 34 1 0.0770 4.5920 -0.4779 35 1 -2.0821 5.7537 -0.2717 36 1 -4.3339 8.0412 3.9171 37 1 -1.2934 6.4819 3.8687 38 1 0.8617 5.3127 3.6631 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281325235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -16.321040 kcal Electronic energy + Delta-G solvation = -26390.880500 eV Core-core repulsion = 22191.376580 eV Total energy + Delta-G solvation = -4199.503920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.080 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.35760 -48.35561 -41.33859 -39.46533 -37.47707 -35.57552 -33.42657 -33.09340 -32.12462 -31.05272 -28.65066 -27.99633 -27.79921 -24.64679 -24.05182 -23.12862 -21.23026 -19.74749 -19.37149 -19.10885 -18.60605 -18.53831 -18.35817 -17.76149 -17.49566 -16.82465 -16.34540 -15.81161 -15.60877 -15.29204 -15.27151 -15.03188 -14.98996 -14.68895 -14.65380 -14.53440 -14.14735 -14.04035 -13.88996 -13.29598 -13.15332 -12.70380 -12.57002 -12.48660 -12.36888 -12.25535 -11.99447 -11.72857 -11.46962 -10.91183 -10.68784 -10.53090 -10.19900 -10.09561 -10.02449 -8.90357 -8.52233 -7.78357 -5.28364 -0.25541 0.01865 0.27122 0.71947 1.48856 1.49225 1.56116 1.89866 2.19937 2.43802 2.58770 2.66178 2.70586 2.75709 3.34594 3.36800 3.41347 3.72627 3.79374 3.82873 4.11029 4.20328 4.24770 4.36117 4.56410 4.64335 4.75657 4.86231 4.94517 4.96518 5.14330 5.29711 5.34839 5.46426 5.64735 5.72273 5.94496 6.28150 6.67012 7.10393 7.50165 7.51498 7.82438 8.21801 9.20917 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.002599 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.788549 B =10771.033460 C =10900.142612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.105 4.105 3 C 0.270 3.730 4 N -0.571 5.571 5 C -0.269 4.269 6 H 0.080 0.920 7 C -0.044 4.044 8 N -0.909 5.909 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.303 1.303 12 H -0.286 1.286 13 C 0.126 3.874 14 C 0.462 3.538 15 O -0.527 6.527 16 N -0.671 5.671 17 C 0.156 3.844 18 C -0.131 4.131 19 C -0.080 4.080 20 C -0.129 4.129 21 S -0.108 6.108 22 C 0.276 3.724 23 F -0.190 7.190 24 F -0.188 7.188 25 C -0.104 4.104 26 C -0.127 4.127 27 H 0.198 0.802 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.426 0.574 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.206 0.794 37 H 0.142 0.858 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 16.075 16.653 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.107 4.107 3 C 0.145 3.855 4 N -0.289 5.289 5 C -0.399 4.399 6 H 0.098 0.902 7 C -0.241 4.241 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.213 1.213 13 C -0.005 4.005 14 C 0.248 3.752 15 O -0.399 6.399 16 N -0.321 5.321 17 C 0.058 3.942 18 C -0.153 4.153 19 C -0.104 4.104 20 C -0.242 4.242 21 S 0.129 5.871 22 C 0.114 3.886 23 F -0.172 7.172 24 F -0.169 7.169 25 C -0.128 4.128 26 C -0.149 4.149 27 H 0.215 0.785 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.265 0.735 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.222 0.778 37 H 0.160 0.840 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.941 15.873 15.249 23.080 hybrid contribution 0.842 -0.352 -0.474 1.028 sum -6.099 15.521 14.776 22.281 Atomic orbital electron populations 1.24533 0.96083 1.04114 1.08275 1.24460 0.95872 0.96735 0.93672 1.17921 0.82305 0.88013 0.97299 1.44218 1.72744 1.05977 1.05933 1.19456 1.22158 1.14683 0.83633 0.90195 1.25753 0.96709 1.00626 1.01001 1.70268 1.23968 1.28237 1.32820 0.85403 0.78335 0.76644 0.80258 1.19410 1.22947 1.21256 1.21414 0.92258 0.90797 0.95982 1.23890 0.93223 0.79692 0.78379 1.90764 1.41858 1.66837 1.40489 1.44027 1.11244 1.31518 1.45276 1.18128 0.88298 0.94360 0.93418 1.21206 0.95555 0.99557 0.98988 1.20674 0.96117 0.97181 0.96391 1.21459 0.98738 1.06454 0.97525 1.86168 1.21477 1.68839 1.10657 1.24773 0.93657 0.80654 0.89562 1.93106 1.97004 1.52009 1.75083 1.93096 1.58117 1.71410 1.94313 1.21320 0.94273 0.99690 0.97475 1.21063 0.97366 1.00597 0.95886 0.78505 0.90800 0.90944 0.94762 0.87570 0.86984 0.73550 0.86801 0.85086 0.77769 0.84032 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.90 18.77 74.32 1.39 -14.50 16 2 C -0.10 -5.39 9.89 31.13 0.31 -5.08 16 3 C 0.27 12.64 5.45 84.57 0.46 13.10 16 4 N -0.57 -26.49 2.09 -716.93 -1.50 -27.99 16 5 C -0.27 -14.05 9.67 84.04 0.81 -13.24 16 6 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 7 C -0.04 -2.43 5.00 84.86 0.42 -2.00 16 8 N -0.91 -53.67 9.24 21.65 0.20 -53.47 16 9 Si 0.96 44.94 29.58 68.60 2.03 46.97 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 C 0.13 4.35 6.18 85.63 0.53 4.88 16 14 C 0.46 17.55 7.65 87.66 0.67 18.23 16 15 O -0.53 -26.28 11.79 -3.08 -0.04 -26.32 16 16 N -0.67 -18.87 5.35 -303.33 -1.62 -20.49 16 17 C 0.16 4.73 6.32 38.11 0.24 4.97 16 18 C -0.13 -4.65 8.70 22.37 0.19 -4.45 16 19 C -0.08 -2.48 9.78 22.39 0.22 -2.26 16 20 C -0.13 -3.42 6.10 22.61 0.14 -3.28 16 21 S -0.11 -2.12 22.16 -56.49 -1.25 -3.37 16 22 C 0.28 3.63 5.37 113.37 0.61 4.24 16 23 F -0.19 -3.29 15.66 44.97 0.70 -2.59 16 24 F -0.19 -3.01 15.62 44.97 0.70 -2.31 16 25 C -0.10 -2.54 8.68 22.39 0.19 -2.34 16 26 C -0.13 -3.07 9.96 22.37 0.22 -2.85 16 27 H 0.20 9.01 7.80 -4.40 -0.03 8.98 16 28 H 0.07 3.83 6.49 -2.39 -0.02 3.82 16 29 H 0.07 2.77 7.98 -2.39 -0.02 2.75 16 30 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.11 3.12 8.03 -2.39 -0.02 3.10 16 32 H 0.11 2.98 7.95 -2.39 -0.02 2.96 16 33 H 0.43 7.85 8.82 -92.71 -0.82 7.03 16 34 H 0.11 4.91 6.14 -2.91 -0.02 4.89 16 35 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.21 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.14 2.96 4.54 -2.91 -0.01 2.94 16 38 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.43 348.50 5.95 -70.48 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.30 Total: 23.68 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.42 Total: -4.60 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -2.92 Total: -101.95 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.04 Total: -26.32 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.41 Total: -4.89 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -1.25 Total: -3.37 kcal Total: -76.43 5.95 -70.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281325235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.162 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds