Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39495 * 125.83545 * 2 1 4 4 C 1.38655 * 133.26877 * 359.75341 * 3 2 1 5 5 C 1.38070 * 119.91689 * 179.97438 * 4 3 2 6 6 C 1.38891 * 120.22439 * 359.97438 * 5 4 3 7 7 O 1.35978 * 119.91202 * 179.97438 * 6 5 4 8 8 S 1.52204 * 113.99882 * 89.99834 * 7 6 5 9 9 O 1.42096 * 104.27469 * 191.06765 * 8 7 6 10 10 O 1.42098 * 104.27522 * 318.92531 * 8 7 6 11 11 C 1.81401 * 104.45077 * 74.99870 * 8 7 6 12 12 C 1.52998 * 109.47229 * 179.97438 * 11 8 7 13 13 C 1.50695 * 109.47232 * 179.97438 * 12 11 8 14 14 H 1.07996 * 120.00029 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00115 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00008 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99948 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47357 * 89.99607 * 17 15 13 19 19 H 1.48494 * 109.47242 * 209.99404 * 17 15 13 20 20 H 1.48502 * 109.47131 * 329.99580 * 17 15 13 21 21 C 1.38528 * 120.16964 * 0.02562 * 6 5 4 22 22 C 1.38648 * 119.81072 * 359.97438 * 21 6 5 23 23 N 1.39277 * 133.27361 * 180.02562 * 22 21 6 24 24 C 1.46496 * 125.79734 * 359.93443 * 23 22 21 25 25 C 1.34631 * 108.40598 * 179.97438 * 23 22 21 26 26 O 1.21695 * 125.15588 * 180.02562 * 25 23 22 27 27 H 1.08998 * 109.47452 * 89.99853 * 1 2 3 28 28 H 1.09002 * 109.46978 * 210.00169 * 1 2 3 29 29 H 1.09009 * 109.46852 * 330.00117 * 1 2 3 30 30 H 1.07994 * 120.03862 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.89035 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.46817 * 300.00196 * 11 8 7 33 33 H 1.08998 * 109.47046 * 59.99641 * 11 8 7 34 34 H 1.08998 * 109.46926 * 299.99786 * 12 11 8 35 35 H 1.09000 * 109.46698 * 59.99489 * 12 11 8 36 36 H 0.97001 * 119.99801 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.09587 * 179.97438 * 21 6 5 38 38 H 1.09007 * 109.47355 * 90.00437 * 24 23 22 39 39 H 1.09003 * 109.47242 * 210.00057 * 24 23 22 40 40 H 1.09000 * 109.47393 * 330.00078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2817 1.1309 0.0000 4 6 2.0196 2.4924 -0.0043 5 6 3.0646 3.3949 -0.0024 6 6 4.3781 2.9435 0.0044 7 8 5.4024 3.8379 0.0057 8 16 5.8630 4.2495 1.3967 9 8 6.7275 5.3536 1.1671 10 8 4.6579 4.4034 2.1336 11 6 6.8023 2.8212 2.0036 12 6 7.3253 3.1154 3.4111 13 6 8.1050 1.9286 3.9155 14 1 8.2168 1.0524 3.2942 15 6 8.6766 1.9619 5.1698 16 7 9.3576 0.9264 5.6098 17 14 8.4839 3.4779 6.2441 18 1 7.2617 3.3424 7.0766 19 1 9.6708 3.6138 7.1259 20 1 8.3657 4.6825 5.3837 21 6 4.6474 1.5847 0.0087 22 6 3.6012 0.6747 0.0068 23 7 3.5464 -0.7170 0.0105 24 6 4.7000 -1.6199 0.0165 25 6 2.2532 -1.0914 0.0066 26 8 1.8569 -2.2420 0.0087 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 0.9994 2.8466 -0.0084 31 1 2.8600 4.4553 -0.0054 32 1 6.1538 1.9454 2.0322 33 1 7.6429 2.6292 1.3368 34 1 7.9738 3.9910 3.3820 35 1 6.4849 3.3077 4.0780 36 1 9.7594 0.9497 6.4923 37 1 5.6692 1.2350 0.0136 38 1 4.9829 -1.8412 1.0457 39 1 4.4391 -2.5461 -0.4956 40 1 5.5363 -1.1445 -0.4961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289633092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -67.151381 kcal Electronic energy + Delta-G solvation = -27783.890008 eV Core-core repulsion = 23693.269434 eV Total energy + Delta-G solvation = -4090.620574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.87521 -40.80122 -38.10376 -36.93112 -36.05189 -35.86368 -35.70081 -34.05927 -31.64202 -30.88558 -30.26971 -28.40823 -26.26783 -26.11317 -23.54469 -23.12463 -21.52115 -21.08607 -20.42496 -18.70030 -17.95077 -17.77372 -17.56011 -17.11572 -16.94536 -16.25311 -15.78456 -15.38874 -15.06176 -14.93933 -14.59852 -14.45664 -14.32845 -13.81653 -13.58147 -13.33109 -13.14007 -13.09377 -12.87738 -12.75552 -12.69586 -12.41733 -11.99416 -11.91724 -11.83476 -11.56591 -11.32747 -11.30580 -10.85531 -10.78397 -10.68782 -10.49780 -10.19569 -9.72041 -9.42479 -8.80780 -8.70602 -8.14076 -6.21108 -4.22843 0.15315 0.75738 0.97343 1.76497 2.22293 2.58538 2.83678 3.12849 3.23402 3.31199 3.34641 3.85854 4.03029 4.17139 4.26318 4.31869 4.53492 4.56665 4.74293 4.83415 4.92841 4.94098 5.09966 5.10445 5.15618 5.20702 5.27472 5.36776 5.43021 5.48111 5.65844 5.77821 5.86122 6.06041 6.15733 6.19968 6.36757 6.72894 6.86475 6.89108 7.48923 7.83949 8.30931 8.78928 9.38359 10.91117 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003889 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.800961 B = 7197.349287 C = 8607.646527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.541 5.541 3 C 0.102 3.898 4 C -0.087 4.087 5 C -0.080 4.080 6 C 0.086 3.914 7 O -0.666 6.666 8 S 2.571 3.429 9 O -0.934 6.934 10 O -0.957 6.957 11 C -0.606 4.606 12 C -0.004 4.004 13 C -0.520 4.520 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.868 3.132 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.261 1.261 21 C -0.114 4.114 22 C 0.109 3.891 23 N -0.537 5.537 24 C 0.094 3.906 25 C 0.682 3.318 26 O -0.550 6.550 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 0.386 -14.537 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.263 5.263 3 C 0.000 4.000 4 C -0.108 4.108 5 C -0.102 4.102 6 C 0.043 3.957 7 O -0.624 6.624 8 S 2.670 3.330 9 O -0.932 6.932 10 O -0.955 6.955 11 C -0.737 4.737 12 C -0.043 4.043 13 C -0.559 4.559 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.694 3.306 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.185 1.185 21 C -0.137 4.137 22 C 0.007 3.993 23 N -0.258 5.258 24 C -0.047 4.047 25 C 0.385 3.615 26 O -0.426 6.426 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.743 0.098 -14.616 22.225 hybrid contribution 0.579 0.180 0.858 1.050 sum -16.164 0.278 -13.758 21.228 Atomic orbital electron populations 1.21799 0.74387 1.04686 1.03293 1.45103 1.07422 1.04322 1.69422 1.18188 0.88093 0.89450 1.04287 1.19867 1.00202 0.87850 1.02886 1.20979 0.89593 1.01258 0.98372 1.17347 0.84929 0.85655 1.07811 1.85780 1.54516 1.63486 1.58628 1.06199 0.75860 0.77927 0.72987 1.93601 1.68183 1.49018 1.82395 1.93599 1.44013 1.86280 1.71604 1.30576 1.13890 1.18122 1.11114 1.19389 0.97367 0.99958 0.87582 1.20811 1.32921 1.00519 1.01684 0.90408 1.24972 0.94329 0.96131 0.97579 1.69875 1.34436 1.29794 1.19111 0.86939 0.78395 0.84096 0.81125 1.19659 1.20718 1.18538 1.20096 0.99496 0.89937 1.04209 1.17489 0.93233 0.83554 1.05007 1.45022 1.07267 1.04384 1.69147 1.21905 0.85284 0.93265 1.04229 1.15905 0.80485 0.84604 0.80543 1.91047 1.76402 1.16712 1.58418 0.91059 0.89257 0.89543 0.83612 0.83102 0.85488 0.84922 0.94728 0.95192 0.92330 0.82937 0.90289 0.89191 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.01 59.85 0.66 1.31 16 2 N -0.54 -5.74 3.19 -126.26 -0.40 -6.15 16 3 C 0.10 1.09 6.84 -83.70 -0.57 0.52 16 4 C -0.09 -0.77 10.02 -39.49 -0.40 -1.17 16 5 C -0.08 -0.86 9.03 -39.40 -0.36 -1.22 16 6 C 0.09 1.09 4.80 -39.23 -0.19 0.90 16 7 O -0.67 -9.35 10.05 -52.00 -0.52 -9.87 16 8 S 2.57 43.09 5.17 -107.50 -0.56 42.54 16 9 O -0.93 -18.40 18.09 -67.04 -1.21 -19.61 16 10 O -0.96 -17.14 16.26 -67.04 -1.09 -18.23 16 11 C -0.61 -10.59 5.40 37.16 0.20 -10.39 16 12 C 0.00 -0.09 4.05 -27.89 -0.11 -0.20 16 13 C -0.52 -14.03 9.66 -34.44 -0.33 -14.37 16 14 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 17 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 21 C -0.11 -1.32 8.42 -39.32 -0.33 -1.65 16 22 C 0.11 1.28 6.83 -83.81 -0.57 0.71 16 23 N -0.54 -6.39 3.18 -126.34 -0.40 -6.80 16 24 C 0.09 0.87 11.00 59.84 0.66 1.53 16 25 C 0.68 9.01 8.44 -87.18 -0.74 8.27 16 26 O -0.55 -8.68 17.47 5.19 0.09 -8.59 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 29 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 1.98 6.60 -51.92 -0.34 1.64 16 33 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 34 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 35 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.15 1.48 7.49 -52.49 -0.39 1.08 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -36.70 354.59 -9.71 -46.40 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.88 Total: -1.86 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.18 Total: -13.80 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.03 Total: -38.62 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -2.73 Total: -56.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 43.09 SS G_CDS: -0.56 Total: 42.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.70 -9.71 -46.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289633092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.748 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds