Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39495 * 125.83545 * 2 1 4 4 C 1.38655 * 133.26877 * 359.75341 * 3 2 1 5 5 C 1.38070 * 119.91689 * 179.97438 * 4 3 2 6 6 C 1.38891 * 120.22439 * 359.97438 * 5 4 3 7 7 O 1.35978 * 119.91202 * 179.97438 * 6 5 4 8 8 S 1.52204 * 113.99882 * 89.99834 * 7 6 5 9 9 O 1.42096 * 104.27469 * 191.06765 * 8 7 6 10 10 O 1.42098 * 104.27522 * 318.92531 * 8 7 6 11 11 C 1.81401 * 104.45077 * 74.99870 * 8 7 6 12 12 C 1.52998 * 109.47229 * 179.97438 * 11 8 7 13 13 C 1.50695 * 109.47232 * 179.97438 * 12 11 8 14 14 H 1.07996 * 120.00029 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00115 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00008 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99948 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47357 * 89.99607 * 17 15 13 19 19 H 1.48494 * 109.47242 * 209.99404 * 17 15 13 20 20 H 1.48502 * 109.47131 * 329.99580 * 17 15 13 21 21 C 1.38528 * 120.16964 * 0.02562 * 6 5 4 22 22 C 1.38648 * 119.81072 * 359.97438 * 21 6 5 23 23 N 1.39277 * 133.27361 * 180.02562 * 22 21 6 24 24 C 1.46496 * 125.79734 * 359.93443 * 23 22 21 25 25 C 1.34631 * 108.40598 * 179.97438 * 23 22 21 26 26 O 1.21695 * 125.15588 * 180.02562 * 25 23 22 27 27 H 1.08998 * 109.47452 * 89.99853 * 1 2 3 28 28 H 1.09002 * 109.46978 * 210.00169 * 1 2 3 29 29 H 1.09009 * 109.46852 * 330.00117 * 1 2 3 30 30 H 1.07994 * 120.03862 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.89035 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.46817 * 300.00196 * 11 8 7 33 33 H 1.08998 * 109.47046 * 59.99641 * 11 8 7 34 34 H 1.08998 * 109.46926 * 299.99786 * 12 11 8 35 35 H 1.09000 * 109.46698 * 59.99489 * 12 11 8 36 36 H 0.97001 * 119.99801 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.09587 * 179.97438 * 21 6 5 38 38 H 1.09007 * 109.47355 * 90.00437 * 24 23 22 39 39 H 1.09003 * 109.47242 * 210.00057 * 24 23 22 40 40 H 1.09000 * 109.47393 * 330.00078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2817 1.1309 0.0000 4 6 2.0196 2.4924 -0.0043 5 6 3.0646 3.3949 -0.0024 6 6 4.3781 2.9435 0.0044 7 8 5.4024 3.8379 0.0057 8 16 5.8630 4.2495 1.3967 9 8 6.7275 5.3536 1.1671 10 8 4.6579 4.4034 2.1336 11 6 6.8023 2.8212 2.0036 12 6 7.3253 3.1154 3.4111 13 6 8.1050 1.9286 3.9155 14 1 8.2168 1.0524 3.2942 15 6 8.6766 1.9619 5.1698 16 7 9.3576 0.9264 5.6098 17 14 8.4839 3.4779 6.2441 18 1 7.2617 3.3424 7.0766 19 1 9.6708 3.6138 7.1259 20 1 8.3657 4.6825 5.3837 21 6 4.6474 1.5847 0.0087 22 6 3.6012 0.6747 0.0068 23 7 3.5464 -0.7170 0.0105 24 6 4.7000 -1.6199 0.0165 25 6 2.2532 -1.0914 0.0066 26 8 1.8569 -2.2420 0.0087 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 0.9994 2.8466 -0.0084 31 1 2.8600 4.4553 -0.0054 32 1 6.1538 1.9454 2.0322 33 1 7.6429 2.6292 1.3368 34 1 7.9738 3.9910 3.3820 35 1 6.4849 3.3077 4.0780 36 1 9.7594 0.9497 6.4923 37 1 5.6692 1.2350 0.0136 38 1 4.9829 -1.8412 1.0457 39 1 4.4391 -2.5461 -0.4956 40 1 5.5363 -1.1445 -0.4961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289633092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -92.576382 kcal Electronic energy + Delta-G solvation = -27784.992519 eV Core-core repulsion = 23693.269434 eV Total energy + Delta-G solvation = -4091.723084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.74292 -41.85790 -39.08638 -38.31858 -37.23576 -36.85873 -36.66314 -35.90859 -33.52746 -31.74899 -30.99729 -29.25942 -27.97459 -26.92880 -24.53988 -24.03920 -23.14494 -21.98840 -21.52268 -19.90919 -19.28906 -18.82686 -18.70314 -18.40193 -17.94672 -17.54215 -16.86172 -16.41312 -16.30998 -16.13002 -15.97791 -15.39606 -15.21048 -15.12205 -14.81866 -14.52023 -14.24556 -14.07852 -13.94447 -13.80772 -13.54703 -13.43859 -13.35461 -13.31918 -13.22952 -13.08420 -13.00079 -12.39931 -12.24823 -11.93965 -11.86169 -11.70755 -11.61456 -11.53867 -11.19239 -10.82273 -9.61540 -9.04671 -8.34529 -6.40023 -1.05817 -0.11875 0.04251 0.93649 1.10407 1.34016 1.36578 1.45860 1.63165 1.98930 2.29876 2.31522 2.54822 2.93843 3.00182 3.22982 3.47597 3.63458 3.79362 3.83907 3.93561 3.99741 4.15820 4.25333 4.34691 4.39790 4.49272 4.56389 4.60640 4.69789 4.76352 4.83836 5.00814 5.04604 5.07094 5.08936 5.21805 5.37258 5.48536 5.52735 6.03392 6.18224 6.66009 6.90868 7.24424 8.80722 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003889 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.800961 B = 7197.349287 C = 8607.646527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.536 5.536 3 C 0.101 3.899 4 C -0.069 4.069 5 C -0.084 4.084 6 C 0.054 3.946 7 O -0.653 6.653 8 S 2.601 3.399 9 O -0.965 6.965 10 O -0.967 6.967 11 C -0.612 4.612 12 C -0.014 4.014 13 C -0.525 4.525 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.940 5.940 17 Si 0.922 3.078 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.246 1.246 21 C -0.115 4.115 22 C 0.089 3.911 23 N -0.540 5.540 24 C 0.086 3.914 25 C 0.667 3.333 26 O -0.587 6.587 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.189 0.811 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.269 0.731 37 H 0.164 0.836 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 2.229 -15.210 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.256 5.256 3 C -0.002 4.002 4 C -0.090 4.090 5 C -0.106 4.106 6 C 0.011 3.989 7 O -0.612 6.612 8 S 2.700 3.300 9 O -0.963 6.963 10 O -0.966 6.966 11 C -0.742 4.742 12 C -0.053 4.053 13 C -0.564 4.564 14 H 0.070 0.930 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.744 3.256 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.169 1.169 21 C -0.138 4.138 22 C -0.013 4.013 23 N -0.260 5.260 24 C -0.054 4.054 25 C 0.370 3.630 26 O -0.465 6.465 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.206 0.794 31 H 0.187 0.813 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.182 0.818 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.763 1.970 -15.288 24.283 hybrid contribution 1.107 -0.494 0.941 1.534 sum -17.656 1.476 -14.347 22.798 Atomic orbital electron populations 1.22166 0.72115 1.05892 1.04895 1.45308 1.08689 1.03499 1.68137 1.18486 0.87712 0.90190 1.03791 1.20264 1.01787 0.86471 1.00458 1.21340 0.89080 1.02642 0.97499 1.17731 0.85294 0.85746 1.10177 1.85755 1.55189 1.63835 1.56447 1.05253 0.74975 0.76751 0.72981 1.93560 1.69182 1.50356 1.83235 1.93568 1.44235 1.86228 1.72526 1.30560 1.15185 1.19883 1.08523 1.19351 0.97172 0.98082 0.90699 1.21155 1.32718 1.01161 1.01328 0.92997 1.25841 0.94265 0.99031 0.99273 1.70006 1.36140 1.32041 1.19824 0.86071 0.78815 0.80997 0.79673 1.18582 1.20252 1.16921 1.20197 1.00214 0.89719 1.03693 1.17669 0.94089 0.83445 1.06054 1.45180 1.07447 1.04887 1.68531 1.22084 0.85429 0.93543 1.04322 1.16173 0.81102 0.84804 0.80906 1.91008 1.77078 1.18153 1.60304 0.89280 0.89962 0.86483 0.79370 0.81337 0.83926 0.83364 0.94658 0.94594 0.92225 0.81837 0.90760 0.88890 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.01 127.77 1.41 2.34 16 2 N -0.54 -10.34 3.19 -671.68 -2.14 -12.48 16 3 C 0.10 1.90 6.84 38.35 0.26 2.16 16 4 C -0.07 -0.95 10.02 22.33 0.22 -0.73 16 5 C -0.08 -1.52 9.03 22.39 0.20 -1.31 16 6 C 0.05 1.24 4.80 22.50 0.11 1.34 16 7 O -0.65 -17.00 10.05 -62.39 -0.63 -17.63 16 8 S 2.60 82.41 5.17 -56.49 -0.29 82.12 16 9 O -0.97 -36.62 18.09 -118.57 -2.15 -38.77 16 10 O -0.97 -32.41 16.26 -118.57 -1.93 -34.33 16 11 C -0.61 -20.62 5.40 71.98 0.39 -20.23 16 12 C -0.01 -0.64 4.05 29.85 0.12 -0.51 16 13 C -0.52 -28.49 9.66 25.60 0.25 -28.25 16 14 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 15 C 0.01 0.81 5.47 84.65 0.46 1.28 16 16 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 17 Si 0.92 42.58 27.47 68.60 1.88 44.46 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 21 C -0.11 -2.46 8.42 22.44 0.19 -2.27 16 22 C 0.09 1.96 6.83 38.39 0.26 2.22 16 23 N -0.54 -12.55 3.18 -671.92 -2.14 -14.69 16 24 C 0.09 1.60 11.00 127.77 1.41 3.01 16 25 C 0.67 17.33 8.44 179.15 1.51 18.84 16 26 O -0.59 -18.74 17.47 -4.33 -0.08 -18.82 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.01 8.03 -2.39 -0.02 0.99 16 29 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 4.28 6.60 -2.39 -0.02 4.26 16 33 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 34 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 35 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.16 2.95 7.49 -2.91 -0.02 2.93 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -80.00 354.59 0.64 -79.35 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.02 Total: 9.29 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 6.79 Total: -22.12 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -3.98 Total: -83.56 kcal Atomic # 8 Polarization: -104.77 SS G_CDS: -4.78 Total: -109.54 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Atomic # 16 Polarization: 82.41 SS G_CDS: -0.29 Total: 82.12 kcal Total: -80.00 0.64 -79.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289633092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.222 kcal (2) G-P(sol) polarization free energy of solvation -79.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds