Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.01845 * 2 1 4 4 C 1.49473 * 109.00428 * 119.15673 * 2 1 3 5 5 O 1.21288 * 122.61444 * 300.60004 * 4 2 1 6 6 N 1.34046 * 114.76750 * 120.82657 * 4 2 1 7 7 C 1.46501 * 126.24987 * 179.73192 * 6 4 2 8 8 S 1.66456 * 107.49730 * 359.76969 * 6 4 2 9 9 O 1.42100 * 107.15911 * 247.47734 * 8 6 4 10 10 O 1.42093 * 107.16302 * 112.51752 * 8 6 4 11 11 N 1.46872 * 109.11702 * 240.91600 * 2 1 3 12 12 C 1.46503 * 127.91617 * 59.54853 * 11 2 1 13 13 C 1.50693 * 109.47151 * 84.08570 * 12 11 2 14 14 C 1.38302 * 119.93011 * 94.75162 * 13 12 11 15 15 C 1.38103 * 120.06699 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.93332 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.06852 * 179.97438 * 16 15 14 18 18 C 1.34826 * 117.00160 * 5.45868 * 17 16 15 19 19 H 1.08002 * 119.99794 * 354.83518 * 18 17 16 20 20 C 1.38652 * 120.00085 * 174.83099 * 18 17 16 21 21 N 1.31557 * 120.00030 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00243 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.47153 * 270.00190 * 22 20 18 24 24 H 1.48497 * 109.47499 * 150.00123 * 22 20 18 25 25 H 1.48503 * 109.46892 * 29.99901 * 22 20 18 26 26 C 1.38883 * 119.85839 * 0.25985 * 16 15 14 27 27 C 1.38096 * 119.93206 * 359.49174 * 26 16 15 28 28 H 1.09001 * 109.47305 * 183.84455 * 1 2 3 29 29 H 1.09000 * 109.46868 * 303.84501 * 1 2 3 30 30 H 1.08997 * 109.47358 * 63.84042 * 1 2 3 31 31 H 1.09001 * 109.46723 * 270.04422 * 7 6 4 32 32 H 1.09004 * 109.47473 * 30.03954 * 7 6 4 33 33 H 1.08996 * 109.47077 * 150.04350 * 7 6 4 34 34 H 1.09003 * 109.46799 * 324.08412 * 12 11 2 35 35 H 1.08999 * 109.46745 * 204.09040 * 12 11 2 36 36 H 1.07998 * 119.96571 * 359.97438 * 14 13 12 37 37 H 1.08001 * 120.03013 * 179.97438 * 15 14 13 38 38 H 0.97006 * 120.00371 * 179.97438 * 21 20 18 39 39 H 1.08001 * 120.02754 * 179.71966 * 26 16 15 40 40 H 1.08004 * 119.96600 * 180.27964 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8852 1.0305 0.0000 4 6 2.0167 -0.6885 1.2342 5 8 1.7379 -0.3042 2.3503 6 7 2.7893 -1.7610 1.0113 7 6 3.4026 -2.6141 2.0322 8 16 2.9254 -1.9458 -0.6374 9 8 2.2427 -3.1433 -0.9828 10 8 4.2783 -1.6776 -0.9791 11 7 2.0110 -0.6746 -1.2127 12 6 1.7523 -0.3106 -2.6081 13 6 2.7338 0.7476 -3.0414 14 6 3.8986 0.3835 -3.6920 15 6 4.7998 1.3510 -4.0908 16 6 4.5352 2.6908 -3.8383 17 8 5.4194 3.6440 -4.2287 18 6 6.4788 3.2354 -4.9556 19 1 6.6392 2.1819 -5.1312 20 6 7.3624 4.1676 -5.4777 21 7 8.3959 3.7689 -6.1874 22 14 7.0855 5.9897 -5.1734 23 1 6.2411 6.5501 -6.2590 24 1 8.3935 6.6923 -5.1510 25 1 6.4015 6.1752 -3.8685 26 6 3.3669 3.0528 -3.1804 27 6 2.4673 2.0810 -2.7887 28 1 -0.3634 -1.0253 0.0689 29 1 -0.3633 0.5724 0.8535 30 1 -0.3634 0.4530 -0.9224 31 1 4.3883 -2.2247 2.2868 32 1 2.7745 -2.6236 2.9231 33 1 3.5013 -3.6287 1.6464 34 1 0.7372 0.0756 -2.7006 35 1 1.8650 -1.1914 -3.2401 36 1 4.1037 -0.6585 -3.8884 37 1 5.7095 1.0660 -4.5985 38 1 9.0139 4.4211 -6.5531 39 1 3.1606 4.0935 -2.9786 40 1 1.5564 2.3623 -2.2810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295130971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -77.084940 kcal Electronic energy + Delta-G solvation = -27701.096047 eV Core-core repulsion = 23610.044722 eV Total energy + Delta-G solvation = -4091.051325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05200 -39.33425 -37.62348 -37.51056 -36.40337 -36.17821 -35.77703 -32.58971 -31.94324 -30.33391 -29.53842 -28.49894 -26.12314 -24.87849 -23.69935 -22.32971 -21.82124 -20.66908 -20.05292 -18.01808 -17.92208 -17.51203 -17.21174 -17.17234 -16.73985 -15.80809 -15.47266 -15.30271 -14.94315 -14.86589 -14.15880 -14.09186 -13.87257 -13.74546 -13.48299 -13.24822 -13.15373 -12.83706 -12.64486 -12.61048 -12.44780 -12.31685 -12.27754 -12.22050 -12.09498 -11.49310 -11.32591 -11.27121 -10.85481 -10.75466 -10.69777 -10.53139 -10.22142 -9.50177 -9.41462 -8.93425 -8.34282 -7.45376 -6.47766 -4.14240 -0.19601 1.52803 1.71877 2.06641 2.18415 2.68961 2.94857 3.18249 3.21672 3.35869 3.63364 4.18262 4.38008 4.41801 4.46816 4.57615 4.76004 4.76834 4.93600 4.95816 5.03832 5.10804 5.18356 5.22338 5.26306 5.37645 5.44742 5.58106 5.65177 5.69087 5.78843 6.05544 6.11177 6.24727 6.47158 6.69769 6.86030 6.92875 7.11766 7.22583 7.52675 7.73917 7.96619 8.86695 9.47402 10.59423 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002989 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.083156 B = 9365.856210 C = 9643.458021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 H 0.136 0.864 4 C 0.514 3.486 5 O -0.468 6.468 6 N -0.943 5.943 7 C 0.098 3.902 8 S 2.747 3.253 9 O -0.957 6.957 10 O -0.937 6.937 11 N -0.981 5.981 12 C 0.220 3.780 13 C -0.217 4.217 14 C -0.047 4.047 15 C -0.220 4.220 16 C 0.167 3.833 17 O -0.213 6.213 18 C -0.391 4.391 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.196 4.196 27 C -0.056 4.056 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.281 0.719 39 H 0.118 0.882 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -10.280 12.670 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 H 0.154 0.846 4 C 0.298 3.702 5 O -0.336 6.336 6 N -0.789 5.789 7 C -0.044 4.044 8 S 2.756 3.244 9 O -0.939 6.939 10 O -0.919 6.919 11 N -0.826 5.826 12 C 0.098 3.902 13 C -0.220 4.220 14 C -0.066 4.066 15 C -0.240 4.240 16 C 0.114 3.886 17 O -0.117 6.117 18 C -0.466 4.466 19 H 0.126 0.874 20 C -0.140 4.140 21 N -0.512 5.512 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.216 4.216 27 C -0.075 4.075 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.155 -10.509 12.687 22.385 hybrid contribution 0.133 0.997 0.264 1.040 sum -15.022 -9.512 12.951 21.997 Atomic orbital electron populations 1.22003 0.90207 1.03860 1.04591 1.21333 0.99387 1.01104 0.81396 0.84626 1.20552 0.77556 0.79879 0.92204 1.90761 1.54869 1.64519 1.23486 1.56718 1.56345 1.35832 1.30005 1.21652 0.99020 0.92616 0.91105 1.03892 0.74710 0.73860 0.71940 1.93671 1.74521 1.45183 1.80522 1.93737 1.34468 1.83813 1.79848 1.57558 1.68784 1.46066 1.10199 1.19869 0.98322 0.96961 0.75001 1.19602 0.98997 0.94238 1.09162 1.20680 0.92509 0.98289 0.95121 1.21268 1.02330 0.92394 1.07980 1.19184 0.88806 0.88302 0.92302 1.83564 1.32127 1.33567 1.62440 1.20806 1.00328 0.96226 1.29256 0.87447 1.24488 0.94424 1.00192 0.94856 1.69646 1.13078 1.35900 1.32605 0.86170 0.77813 0.82784 0.80061 1.19812 1.20707 1.18346 1.20189 0.94489 0.99516 1.07393 1.20429 0.97678 0.91713 0.97659 0.91450 0.89966 0.89591 0.90175 0.88949 0.89635 0.89059 0.89439 0.87280 0.84783 0.90922 0.86444 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.22 37.16 0.34 -0.64 16 2 C 0.08 0.72 3.67 -69.47 -0.26 0.46 16 3 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.51 5.55 7.08 -11.90 -0.08 5.47 16 5 O -0.47 -5.96 17.45 5.55 0.10 -5.87 16 6 N -0.94 -9.97 3.42 -68.75 -0.24 -10.21 16 7 C 0.10 0.75 11.09 59.85 0.66 1.42 16 8 S 2.75 33.76 6.30 -107.50 -0.68 33.08 16 9 O -0.96 -13.11 18.17 -57.04 -1.04 -14.15 16 10 O -0.94 -14.81 18.17 -57.04 -1.04 -15.85 16 11 N -0.98 -10.45 3.11 -110.18 -0.34 -10.79 16 12 C 0.22 2.28 6.45 -5.20 -0.03 2.25 16 13 C -0.22 -3.14 5.47 -104.58 -0.57 -3.71 16 14 C -0.05 -0.82 9.67 -39.61 -0.38 -1.20 16 15 C -0.22 -4.65 9.17 -39.39 -0.36 -5.01 16 16 C 0.17 3.72 6.65 -39.10 -0.26 3.46 16 17 O -0.21 -5.48 8.59 0.07 0.00 -5.48 16 18 C -0.39 -10.84 9.95 30.89 0.31 -10.53 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -24.96 13.96 55.48 0.77 -24.18 16 22 Si 0.91 21.27 28.62 -169.99 -4.86 16.41 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.20 -3.59 9.99 -39.39 -0.39 -3.99 16 27 C -0.06 -0.81 9.71 -39.61 -0.38 -1.20 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.45 7.17 -51.93 -0.37 0.08 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.61 7.95 -51.93 -0.41 0.20 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.68 7.12 -51.93 -0.37 0.31 16 35 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 38 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 40 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -34.43 357.28 -8.12 -42.55 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.67 Total: 0.65 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.51 Total: -11.55 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.20 Total: -45.18 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.98 Total: -41.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.86 Total: 16.41 kcal Atomic # 16 Polarization: 33.76 SS G_CDS: -0.68 Total: 33.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.43 -8.12 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295130971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.539 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds